José D. Faraldo‐Gómez

Also affiliated with National Heart Lung and Blood Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “Structure of Human ATG9A, the Only Transmembrane Protein of the Core Autophagy Machinery”.

Structure of Human ATG9A, the Only Transmembrane Protein of the Core Autophagy Machinery

Cell Reports(2020)10.1016/j.celrep.2020.107837

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0.777DataRank · unranked

177 citations

Xiao-Feng Tan, Tengfei Lian, Mitra S. Rana, Wenchang Zhou, Eric T. Christenson +6 more

Asymmetric drug binding in an ATP-loaded inward-facing state of an ABC transporter

Nature Chemical Biology(2021)10.1038/s41589-021-00936-x

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0.515DataRank · unranked

30 citations

Smriti Mishra, Wenchang Zhou, Michael J. Mohan, Qingyu Tang, José D. Faraldo‐Gómez +3 more

Membrane transporter dimerization driven by differential lipid solvation energetics of dissociated and associated states

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.05.327239

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0.104DataRank · unranked

1 citations

Nathan Bernhardt, Elizabeth G. Kelley, Susana C. M. Teixeira, Kacie Griffith, Alejandro Gil-Ley +7 more

Bedaquiline inhibits the yeast and human mitochondrial ATP synthases

Communications Biology(2020)10.1038/s42003-020-01173-z

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0DataRank · unranked

59 citations

Wenchang Zhou, Hiral Patel, Anurag P. Srivastava, J. Symerský, Michał M. Bonar +4 more

New Molecular-Mechanics Model for Simulations of Hydrogen Fluoride in Chemistry and Biology

Journal of Chemical Theory and Computation(2020)10.1021/acs.jctc.0c00247

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0DataRank · unranked

35 citations

José D. Faraldo‐Gómez, Esam A. Orabi

The structure of human ATG9A and its interplay with the lipid bilayer

Autophagy(2020)10.1080/15548627.2020.1830522

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0DataRank · unranked

11 citations

Eric T. Christenson, Wenchang Zhou, Xiao-Feng Tan, Tengfei Lian, José D. Faraldo‐Gómez +4 more

Conserved binding site in the N-lobe of prokaryotic MATE transporters suggests a role for Na+ in ion-coupled drug efflux

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100262

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0DataRank · unranked

11 citations

Derek P. Claxton, Emel Ficici, Tsukasa Kusakizako, Robyn Stix, Wenchang Zhou +4 more

On the Role of a Conserved Methionine in the Na+-Coupling Mechanism of a Neurotransmitter Transporter Homolog

Neurochemical Research(2021)10.1007/s11064-021-03253-w

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0DataRank · unranked

7 citations

Gianluca Trinco, Dirk Jan Slotboom, Lucy R. Forrest, José D. Faraldo‐Gómez, Wenchang Zhou

Structure of the Shaker Kv channel and mechanism of slow C-type inactivation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.21.461258

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0DataRank · unranked

12 citations

Chanhyung Bae, Robyn Stix, Ana I. Fernández-Mariño, Kate Huffer, Tsg-Hui Chang +4 more

Cryo-EM structure of an elusive pre-transport intermediate of the multidrug ABC transporter BmrCD reveals modes of asymmetric drug binding

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.13.435271

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0DataRank · unranked

3 citations

Smriti Mishra, Wenchang Zhou, José D. Faraldo‐Gómez, Hassane S. Mchaourab, Thomas Tomasiak +1 more

Force-Correction Analysis Method for Derivation of Multidimensional Free Energy Landscapes from Adaptively Biased Replica Simulations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.17.431654

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0DataRank · unranked

0 citations

José D. Faraldo‐Gómez, Fabrizio Marinelli

Differential ion dehydration energetics explains selectivity in the non-canonical lysosomal K + channel TMEM175

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.05.467414

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0DataRank · unranked

0 citations

Fabrizio Marinelli, Wenchang Zhou, Jooyeon Lee, Ho Jeong Choi, Min Kim +3 more

Structure of the Shaker Kv channel and mechanism of slow C-type inactivation

Science Advances(2022)10.1126/sciadv.abm7814

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0DataRank · unranked

107 citations

Chanhyung Bae, Robyn Stix, Ana I. Fernández-Mariño, Kate Huffer, Tsg-Hui Chang +4 more

Bivalent recognition of fatty acyl-CoA by a human integral membrane palmitoyltransferase

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2022050119

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0DataRank · unranked

32 citations

Robyn Stix, Mitra S. Rana, Flowreen Shikwana, R. Elliot Murphy, Rodolfo Ghirlando +3 more

MOSAICS: A software suite for analysis of membrane structure and dynamics in simulated trajectories

Biophysical Journal(2022)10.1016/j.bpj.2022.11.005

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0DataRank · unranked

19 citations

José D. Faraldo‐Gómez, Nathan Bernhardt

Interpreting Hydrogen-Deuterium Exchange Experiments with Molecular Simulations: Tutorials and Applications of the HDXer Ensemble Reweighting Software [Article v1.0]

Living Journal of Computational Molecular Science(2022)10.33011/livecoms.3.1.1521

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0DataRank · unranked

16 citations

Richard T. Bradshaw, Fabrizio Marinelli, Kyle C. Kihn, Ally K. Smith, Patrick L. Wintrode +4 more

State-specific morphological deformations of the lipid bilayer explain mechanosensitive gating of MscS ion channels

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.01.498513

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0DataRank · unranked

0 citations

Bharat Reddy, Navid Bavi, Eduardo Perozo, José D. Faraldo‐Gómez, Yein Christina Park

State-specific morphological deformations of the lipid bilayer explain mechanosensitive gating of MscS ion channels

eLife(2023)10.7554/elife.81445

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0DataRank · unranked

24 citations

Bharat Reddy, Navid Bavi, Eduardo Perozo, José D. Faraldo‐Gómez, Yein Christina Park

Eukaryotic Kv channel Shaker inactivates through selectivity filter dilation rather than collapse

Science Advances(2023)10.1126/sciadv.adj5539

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0DataRank · unranked

17 citations

Xiao-Feng Tan, Chanhyung Bae, Ana I. Fernández-Mariño, Kenton J. Swartz, José D. Faraldo‐Gómez +1 more

Dimerization mechanism of an inverted-topology ion channel in membranes

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2308454120

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0DataRank · unranked

11 citations

Esam A. Orabi, Randy B Stockbridge, José D. Faraldo‐Gómez, Janice Robertson, Melanie Ernst

Membrane free-energy landscapes derived from atomistic dynamics explain nonuniversal cholesterol-induced stiffening

PNAS Nexus(2023)10.1093/pnasnexus/pgad269

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0DataRank · unranked

10 citations

Lucy R. Forrest, José D. Faraldo‐Gómez, Giacomo Fiorin

Ca2+ efflux facilitated by co-transport of inorganic phosphate anion in the H+/Ca2+ antiporter YfkE

Communications Biology(2023)10.1038/s42003-023-04944-6

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0DataRank · unranked

6 citations

Wenchang Zhou, Shuo Lu, Trung Vu, Vasanthi Jayaraman, José D. Faraldo‐Gómez +2 more

Conformational free-energy landscapes of a Na + /Ca 2+ exchanger explain its alternating-access mechanism and functional specificity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.20.524959

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0DataRank · unranked

7 citations

José D. Faraldo‐Gómez, Fabrizio Marinelli

Membrane free-energy landscapes derived from atomistic dynamics explain nonuniversal cholesterol-induced stiffening

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.02.525347

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0DataRank · unranked

1 citations

Lucy R. Forrest, José D. Faraldo‐Gómez, Giacomo Fiorin

Conformational free-energy landscapes of a Na + /Ca 2+ exchanger explain its alternating-access mechanism and functional specificity

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2318009121

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0DataRank · unranked

16 citations

José D. Faraldo‐Gómez, Fabrizio Marinelli

Distinct mechanisms of inhibition of Kv2 potassium channels by tetraethylammonium and RY785

eLife(2024)10.7554/elife.101855

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0DataRank · unranked

0 citations

Robyn Stix, Esam A. Orabi, Nathan Bernhardt, José D. Faraldo‐Gómez, Shan Zhang

Structure and Mechanism of DHHC Protein Acyltransferases

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.05.023

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0DataRank · unranked

81 citations

Chul‐Jin Lee, José D. Faraldo‐Gómez, Anirban Banerjee, Robyn Stix

An embedded lipid in the multidrug transporter LmrP suggests a mechanism for polyspecificity

Nature Structural & Molecular Biology(2020)10.1038/s41594-020-0464-y

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0DataRank · unranked

80 citations

Andrew Hutchin, Matthieu Masureel, Emel Ficici, Chloé Martens, Pierre Legrand +6 more