Simone Zuffa

Also affiliated with University of California San Diego, University of Montana

Biochemistry, Genetics and Molecular BiologyMedicineNursingComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

4.7Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The underappreciated diversity of bile acid modifications

Cell(2024)10.1016/j.cell.2024.02.019

Top 7%

3.2DataRank

Top 7%192 citations

Helena Mannochio-Russo, Joshua V. Schweer, Yasin El Abiead, Wout Bittremieux, Shipei Xing +23 more

Papers

Driven by 23 papers — median percentile 54. Top paper: “The underappreciated diversity of bile acid modifications”.

The underappreciated diversity of bile acid modifications

Cell(2024)10.1016/j.cell.2024.02.019

Top 7%

3.2DataRank

Top 7%192 citations

Helena Mannochio-Russo, Joshua V. Schweer, Yasin El Abiead, Wout Bittremieux, Shipei Xing +23 more

Enabling pan-repository reanalysis for big data science of public metabolomics data

Nature Communications(2025)10.1038/s41467-025-60067-y

Top 33%

0.600DataRank

Top 33%33 citations

Michael Strobel, Thomas Payne, Eoin Fahy, Claire O’Donovan, Shankar Subramamiam +17 more

Enabling pan-repository reanalysis for big data science of public metabolomics data

ChemRxiv(2024)10.26434/chemrxiv-2024-jt46s

Top 46%

0.397DataRank

Top 46%10 citations

Michael Strobel, Thomas Payne, Eoin Fahy, Claire O’Donovan, Shankar Subramamiam +12 more

The undiscovered natural product potential of Actinomycetes

The Journal of Antibiotics(2025)10.1038/s41429-025-00876-x

Top 56%

0.292DataRank

Top 56%6 citations

Andrés Cumsille, Sarolt Magyari, María Taboada-Alquerque, Bahar Behsaz, Tiago Leão +13 more

Targeted Microbial Shifts and Metabolite Profiles Were Associated with Clinical Response to an Anti-Inflammatory Diet in Osteoarthritis

Nutrients(2025)10.3390/nu17172729

N/A

0.273DataRank · unranked

5 citations

Kevin Bu, Roxana Coras, Martha Cedeño, Simone Zuffa, Jessica Murillo‐Saich +16 more

A resource to empirically establish drug exposure records directly from untargeted metabolomics data

Nature Communications(2025)10.1038/s41467-025-65993-5

Top 65%

0.208DataRank

Top 65%3 citations

Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron‐Lamoureux, Wout Bittremieux +54 more

microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data

Nature Microbiology(2024)10.1038/s41564-023-01575-9

N/A

0DataRank · unranked

118 citations

Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andrés Mauricio Caraballo‐Rodríguez, Yasin El Abiead +95 more

Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies

mSystems(2024)10.1128/msystems.00985-24

N/A

0DataRank · unranked

17 citations

Pedro Belda‐Ferre, Simone Zuffa, Vincent Charron‐Lamoureux, Ipsita Mohanty, Gail Ackermann +13 more

Dietary iron intake has long-term effects on the fecal metabolome and microbiome

Metallomics(2024)10.1093/mtomcs/mfae033

N/A

0DataRank · unranked

4 citations

Simone Zuffa, Hui Zhi, Kevin Mildau, Manuela Raffatellu, Pieter C. Dorrestein +2 more

Receptor and metabolic insights on the ability of caffeine to prevent alcohol-induced stimulation of mesolimbic dopamine transmission

Translational Psychiatry(2024)10.1038/s41398-024-03112-6

N/A

0DataRank · unranked

4 citations

Riccardo Maccioni, Giuseppe Talani, Simone Zuffa, Yasin El Abiead, Irene Lorrai +13 more

The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns

Cell(2025)10.1016/j.cell.2025.01.039

N/A

0DataRank · unranked

20 citations

Haoqi Nina Zhao, Daniel McDonald, Helena Mannochio-Russo, Simone Zuffa, Renee Oles +20 more

Gut microbiota and derived metabolites mediate obstructive sleep apnea induced atherosclerosis

Gut Microbes(2025)10.1080/19490976.2025.2474142

N/A

0DataRank · unranked

19 citations

Celeste Allaband, Simone Zuffa, Orit Poulsen, Jason D. Meadows, Dan Zhou +4 more

Microbiome-derived bile acid signatures in early life and their association with islet autoimmunity

Nature Communications(2025)10.1038/s41467-025-66619-6

N/A

0DataRank · unranked

12 citations

Alex M. Dickens, Tanja Buchacher, Tianai Lou, Vincent Charron‐Lamoureux, Roosa Kattelus +24 more

Environmental and maternal imprints on infant gut metabolic development

Cell Host & Microbe(2025)10.1016/j.chom.2025.11.002

N/A

0DataRank · unranked

7 citations

Celeste Allaband, Jennifer C. Onuora, Daniela S. Perry, Simone Zuffa, Lucas Patel +29 more

Fecal microbial and metabolic signatures in children with very early onset inflammatory bowel disease

npj Biofilms and Microbiomes(2025)10.1038/s41522-025-00899-0

N/A

0DataRank · unranked

5 citations

Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty, Abubaker Patan, Helena Mannochio-Russo +12 more

Fecal Microbial and Metabolic Signatures in VEO-IBD: Implications for Unique Pathophysiology

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.26.650779

N/A

0DataRank · unranked

0 citations

Simone Zuffa, Vincent Charron‐Lamoureux, Ipsita Mohanty, Abubaker Patan, Helena Mannochio-Russo +12 more

Obesity and ethnicity alter gene expression in skin

Scientific Reports(2020)10.1038/s41598-020-70244-2

N/A

0DataRank · unranked

22 citations

Sandra Garcet, José O. Alemán, Christopher E. Mason, David Danko, Daniel Butler +6 more

Environmental and Maternal Imprints on Infant Gut Metabolic Programming

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.24.666662

N/A

0DataRank · unranked

0 citations

Celeste Allaband, Jennifer C. Onuora, Daniela S. Perry, Simone Zuffa, Lucas Patel +29 more

Obesity and Race Alter Gene Expression in Skin

medRxiv(2020)10.1101/2020.06.02.20120469

N/A

0DataRank · unranked

0 citations

Sandra Garcet, José O. Alemán, Christopher E. Mason, David Danko, Simone Zuffa +5 more

Transfer of antibiotics and their metabolites in human milk: Implications for infant health and microbiota

Pharmacotherapy The Journal of Human Pharmacology and Drug Therapy(2022)10.1002/phar.2732

N/A

0DataRank · unranked

16 citations

Erce Denizer, Simone Zuffa, Brookie M. Best, Lars Bode, Christina Chambers +7 more

The Hitchhiker’s Guide to Statistical Analysis of Feature-based Molecular Networks from Non-Targeted Metabolomics Data

Socio-Environmental Systems Modeling(2023)10.26434/chemrxiv-2023-wwbt0

N/A

0DataRank · unranked

15 citations

Axel Walter, Filip Ottosson, Francesco Russo, Marcelo Navarro-Díaz, Judith Boldt +52 more

A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.20.549584

N/A

0DataRank · unranked

5 citations

Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andrés Mauricio Caraballo‐Rodríguez, Yasin El Abiead +95 more

A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data

Research Square(2023)10.21203/rs.3.rs-3189768/v1

N/A

0DataRank · unranked

4 citations

Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender Portal Gomes, Andrés Mauricio Caraballo‐Rodríguez +95 more

Simone Zuffa

Indexed papers

Top data-sharing exemplar

Papers