Chengxin Zhang

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.1Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

BioLiP2: an updated structure database for biologically relevant ligand–protein interactions

Nucleic Acids Research(2023)10.1093/nar/gkad630

Top 7%

3.0DataRank

Top 7%140 citations

Xi Zhang, Lydia Freddolino, Yang Zhang, Chengxin Zhang

Papers

Driven by 33 papers — median percentile 75. Top paper: “BioLiP2: an updated structure database for biologically relevant ligand–protein interactions”.

BioLiP2: an updated structure database for biologically relevant ligand–protein interactions

Nucleic Acids Research(2023)10.1093/nar/gkad630

Top 7%

3.0DataRank

Top 7%140 citations

Xi Zhang, Lydia Freddolino, Yang Zhang, Chengxin Zhang

Detecting distant-homology protein structures by aligning deep neural-network based contact maps

PLOS Computational Biology(2019)10.1371/journal.pcbi.1007411

N/A

2.2DataRank · unranked

57 citations

Qiqige Wuyun, Yang Li, S. M. Mortuza, Chengxin Zhang, Robin Pearce +3 more

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

Journal of Proteome Research(2021)10.1021/acs.jproteome.0c00359

Top 19%

1.0DataRank

Top 19%27 citations

Wei Zheng, Micah Cheng, Gilbert S. Omenn, Peter L. Freddolino, Yang Zhang +1 more

Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018–2019 Additions to neXtProt and the CAFA3 Challenge

Journal of Proteome Research(2019)10.1021/acs.jproteome.9b00537

N/A

0.959DataRank · unranked

24 citations

Lydie Lane, Gilbert S. Omenn, Yang Zhang, Chengxin Zhang

ADDRESS: A Database of Disease-associated Human Variants Incorporating Protein Structure and Folding Stabilities

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.166840

Top 25%

0.814DataRank

Top 25%27 citations

Chengxin Zhang, Yang Zhang, Jaie Woodard

FURNA: A database for functional annotations of RNA structures

PLoS Biology(2024)10.1371/journal.pbio.3002476

Top 70%

0.141DataRank

Top 70%1 citations

Lydia Freddolino, Chengxin Zhang

FURNA: a database for function annotations of RNA structures

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.19.572314

Top 78%

0.104DataRank

Top 78%1 citations

Lydia Freddolino, Chengxin Zhang

RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.21.440788

N/A

0.104DataRank · unranked

1 citations

Amit S. Pithadia, Hanna Trzeciakiewicz, Emily V. Crowley, Regina Pacitto, Nathaniel Safren +7 more

Gut Fungi Possess a Conserved Toxin Immunity Gene of Bacterial Origin

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.15.341461

N/A

0DataRank · unranked

0 citations

Chengxin Zhang, Peter L. Freddolino, Yang Zhang, Syed M. Rizvi

Protein inter‐residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26211

N/A

0DataRank · unranked

23 citations

Chengxin Zhang, Wei Zheng, Xiaogen Zhou, Eric W. Bell, Dong‐Jun Yu +2 more

Integrating Multimeric Threading With High-throughput Experiments for Structural Interactome of Escherichia coli

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.166944

N/A

0DataRank · unranked

16 citations

Aysam Guerler, Chengxin Zhang, Elisa Warner, Chunhua Li, Yang Zhang +1 more

GPU-I-TASSER: a GPU accelerated I-TASSER protein structure prediction tool

Bioinformatics(2021)10.1093/bioinformatics/btab871

N/A

0DataRank · unranked

18 citations

Chengxin Zhang, Yang Zhang, Dukka B. KC, Elijah MacCarthy

Evolution of myoglobin in avian lineages: positive selection for aggregation resistance in penguins and high purifying selection in galliforms

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.26.433090

N/A

0DataRank · unranked

1 citations

Wei Zheng, Chengxin Zhang, Yang Zhang, Syed M. Rizvi

I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction

Nature Protocols(2022)10.1038/s41596-022-00728-0

N/A

0DataRank · unranked

518 citations

Wei Zheng, Yang Li, Robin Pearce, Chengxin Zhang, Eric W. Bell +3 more

Generation of a live attenuated influenza A vaccine by proteolysis targeting

Nature Biotechnology(2022)10.1038/s41587-022-01381-4

N/A

0DataRank · unranked

81 citations

Quan Shen, Jing Li, Li Chen, Jinying Shen, Xue Xiao +22 more

Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010793

N/A

0DataRank · unranked

70 citations

Chengxin Zhang, Dong‐Jun Yu, Yang Zhang, Yiheng Zhu

Progressive assembly of multi-domain protein structures from cryo-EM density maps

Nature Computational Science(2022)10.1038/s43588-022-00232-1

N/A

0DataRank · unranked

69 citations

Yang Li, Chengxin Zhang, Wei Zheng, Guijun Zhang, Yang Zhang +1 more

rMSA: A Sequence Search and Alignment Algorithm to Improve RNA Structure Modeling

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167904

N/A

0DataRank · unranked

56 citations

Yang Zhang, Anna Marie Pyle, Chengxin Zhang

RTL8 promotes nuclear localization of UBQLN2 to subnuclear compartments associated with protein quality control

Cellular and Molecular Life Sciences(2022)10.1007/s00018-022-04170-z

N/A

0DataRank · unranked

21 citations

Hanna Trzeciakiewicz, Amit S. Pithadia, Emily V. Crowley, Regina Pacitto, Nathaniel Safren +8 more

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.03.001

N/A

0DataRank · unranked

11 citations

Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong‐Jun Yu +2 more

Identifying the Zoonotic Origin of SARS-CoV-2 by Modeling the Binding Affinity between the Spike Receptor-Binding Domain and Host ACE2

Journal of Proteome Research(2020)10.1021/acs.jproteome.0c00717

N/A

0DataRank · unranked

35 citations

Chengxin Zhang, Robin Pearce, Gilbert S. Omenn, Yang Zhang, Xiaoqiang Huang

Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure prediction

Nature Communications(2023)10.1038/s41467-023-41303-9

N/A

0DataRank · unranked

106 citations

Chengxin Zhang, Chenjie Feng, Robin Pearce, Lydia Freddolino, Yang Zhang +1 more

Predicting the Structural Impact of Human Alternative Splicing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.21.572928

N/A

0DataRank · unranked

8 citations

Chengxin Zhang, Gilbert S. Omenn, Matthew J. O’Meara, Joshua D. Welch, Yuxuan Song

A large-scale assessment of sequence database search tools for homology-based protein function prediction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.14.567021

N/A

0DataRank · unranked

2 citations

Lydia Freddolino, Chengxin Zhang

Improving deep learning protein monomer and complex structure prediction using DeepMSA2 with huge metagenomics data

Nature Methods(2024)10.1038/s41592-023-02130-4

N/A

0DataRank · unranked

130 citations

Qiqige Wuyun, Yang Li, Chengxin Zhang, Lydia Freddolino, Yang Zhang +1 more

Molecular insights into de novo small-molecule recognition by an intron RNA structure

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2502425122

N/A

0DataRank · unranked

4 citations

Ling Xu, Kevin Chung, Luke J. Sisto, Jimin Hwang, Chengxin Zhang +3 more

Predicting the structural impact of human alternative splicing

Genome biology(2025)10.1186/s13059-025-03744-x

N/A

0DataRank · unranked

3 citations

Chengxin Zhang, Gilbert S. Omenn, Matthew J. O’Meara, Joshua D. Welch, Yuxuan Song

StoPred: Accurate Stoichiometry Prediction for Protein Complexes Using Protein Language Models and Graph Attention

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.20.683515

N/A

0DataRank · unranked

2 citations

Chunxiang Peng, Wei Zheng, Chengxin Zhang, Lydia Freddolino, Quancheng Liu

Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations

Cell Reports Methods(2021)10.1016/j.crmeth.2021.100014

N/A

0DataRank · unranked

590 citations

Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang +1 more

Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons

Bioinformatics(2020)10.1093/bioinformatics/btaa548

N/A

0DataRank · unranked

17 citations

Chengxin Zhang, Lydia Freddolino, Yang Zhang, Xiaoqiong Wei

Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions

Nature Communications(2021)10.1038/s41467-021-25316-w

N/A

0DataRank · unranked

94 citations

Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Yang Zhang +1 more

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008865

N/A

0DataRank · unranked

84 citations

Chengxin Zhang, Eric W. Bell, Wei Zheng, Xiaogen Zhou, Dong‐Jun Yu +2 more

Protein structure prediction using deep learning distance and hydrogen‐bonding restraints in CASP14

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26193

N/A

0DataRank · unranked

63 citations

Yang Li, Chengxin Zhang, Xiaogen Zhou, Robin Pearce, Eric W. Bell +3 more

Chengxin Zhang

Indexed papers

Top data-sharing exemplar

Papers