Charles Lee

Also affiliated with The Jackson Laboratory for Genomic Medicine

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

57.6Author DataRank

Indexed papers

13in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 13 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Papers

Driven by 57 papers — median percentile 97. Top paper: “A global reference for human genetic variation”.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

An integrated map of structural variation in 2,504 human genomes

Nature(2015)10.1038/nature15394

Top 2%

9.1DataRank

Top 2%2686 citations

Tobias Rausch, Marianne K. DeGorter, Robert E. Handsaker, Alexej Abyzov, Joanna M. M. Howson +75 more

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

Nature Communications(2014)10.1038/ncomms4934

Top 2%

8.3DataRank

Top 2%460 citations

Jonathan Marchini, Peter Donnelly, Gerton Lunter, Jonathan L. Marchini, Simon Myers +364 more

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Cell(2018)10.1016/j.cell.2018.02.052

Top 2%

8.1DataRank

Top 2%3980 citations

Katherine A. Hoadley, Laila M. Poisson, Alexander J. Lazar, Andrew D. Cherniack, Albert J. Kovatich +866 more

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Cell(2018)10.1016/j.cell.2018.03.033

Top 3%

6.4DataRank

Top 3%447 citations

Matthew H. Bailey, Hoifung Poon, Vesteinn Thorsson, Antonio Colaprico, Andreas Bender +883 more

High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios

Cell(2022)10.1016/j.cell.2022.08.004

Top 3%

6.3DataRank

Top 3%1056 citations

Uday S. Evani, Xuefang Zhao, Anna O. Basile, Haley Abel, Allison A. Regier +37 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

Cell Reports(2018)10.1016/j.celrep.2018.03.046

N/A

5.5DataRank · unranked

186 citations

Francisco Sanchez-Vega, Konnor C. La, Joshua Armenia, Walid K. Chatila, Augustin Luna +869 more

One reference genome is not enough

Genome Biology(2019)10.1186/s13059-019-1717-0

N/A

3.3DataRank · unranked

120 citations

Wan-Ping Lee, Kai Ye, Charles Lee, Xiaofei Yang

Oncogenic Signaling Pathways in The Cancer Genome Atlas

Cell(2018)10.1016/j.cell.2018.03.035

N/A

1.2DataRank · unranked

3322 citations

Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor C. La +891 more

Complex genetic variation in nearly complete human genomes

Nature(2025)10.1038/s41586-025-09140-6

Top 19%

1.1DataRank

Top 19%83 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs

Nature Genetics(2008)10.1038/ng.237

N/A

1.0DataRank · unranked

809 citations

Finny G. Kuruvilla, Steven A. McCarroll, Alec Wysoker, Taras K. Oleksyk, Simon Cawley +12 more

A murine lung cancer co-clinical trial identifies genetic modifiers of therapeutic response

UNC Libraries(2021)10.17615/d9z4-0943

N/A

0.881DataRank · unranked

26 citations

Chun-Xiao Xu, Michael D. Cameron, D. Neil Hayes, Lucian R. Chirieac, Jing Ouyang +38 more

Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads

Nature Biotechnology(2020)10.1038/s41587-020-0719-5

N/A

0.815DataRank · unranked

228 citations

Peter Ebert, Peter A. Audano, Mitchell R. Vollger, William T. Harvey, Pierre Marijon +16 more

Conservation of copy number profiles during engraftment and passaging of patient-derived cancer xenografts

Nature Genetics(2021)10.1038/s41588-020-00750-6

N/A

0.790DataRank · unranked

193 citations

Jessica Giordano, Anuj Srivastava, Min Jin Ha, Michael W. Lloyd, Roebi de Bruijn +57 more

Complex genetic variation in nearly complete human genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614721

Top 27%

0.741DataRank

Top 27%27 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Expectations and blind spots for structural variation detection from long-read assemblies and short-read genome sequencing technologies

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.03.014

N/A

0.739DataRank · unranked

137 citations

Ryan L. Collins, Wan‐Ping Lee, Alexandra M. Weber, Yukyung Jun, Qihui Zhu +18 more

Assembly of 43 human Y chromosomes reveals extensive complexity and variation

Nature(2023)10.1038/s41586-023-06425-6

N/A

0.721DataRank · unranked

121 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

Reconstruction of the human amylase locus reveals ancient duplications seeding modern-day variation

Science(2024)10.1126/science.adn0609

N/A

0.590DataRank · unranked

50 citations

Charikleia Karageorgiou, Kwondo Kim, Petar Pajic, Kendra Scheer, Christine R. Beck +18 more

SvAnna: efficient and accurate pathogenicity prediction of coding and regulatory structural variants in long-read genome sequencing

Genome Medicine(2022)10.1186/s13073-022-01046-6

N/A

0.564DataRank · unranked

42 citations

Julius O.B. Jacobsen, Parithi Balachandran, Qihui Zhu, Feyza Yilmaz, Justin T Reese +9 more

Structural polymorphism and diversity of human segmental duplications

Nature Genetics(2025)10.1038/s41588-024-02051-8

N/A

0.538DataRank · unranked

35 citations

Philip C. Dishuck, DongAhn Yoo, William T. Harvey, Katherine M. Munson, Alexandra P. Lewis +8 more

Assembly of 43 diverse human Y chromosomes reveals extensive complexity and variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518658

Top 37%

0.528DataRank

Top 37%9 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

Employees’ Views and Ethical, Legal, and Social Implications Assessment of Voluntary Workplace Genomic Testing

Frontiers in Genetics(2021)10.3389/fgene.2021.643304

N/A

0.425DataRank · unranked

16 citations

W Feero, Debra Mathews, Anya E. R. Prince, Lori Lyn Price, Edison T. Liu +4 more

Impact and characterization of serial structural variations across humans and great apes

Nature Communications(2024)10.1038/s41467-024-52027-9

N/A

0.385DataRank · unranked

12 citations

Tobias Rausch, Michael Jendrusch, Hufsah Ashraf, Peter A. Audano, Ola Austine +49 more

Haplotype-resolved inversion landscape reveals hotspots of mutational recurrence associated with genomic disorders

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.20.472354

N/A

0.373DataRank · unranked

11 citations

Wolfram Höps, Hufsah Ashraf, PingHsun Hsieh, Bernardo Rodríguez–Martín, Feyza Yilmaz +20 more

High level of complexity and global diversity of the 3q29 locus revealed by optical mapping and long-read sequencing

Genome Medicine(2023)10.1186/s13073-023-01184-5

N/A

0.373DataRank · unranked

11 citations

Gurusamy Umamaheswaran, Trenell J. Mosley, Pille Hallast, Kwondo Kim, Yulia Mostovoy +7 more

muCNV: genotyping structural variants for population-level sequencing

Bioinformatics(2021)10.1093/bioinformatics/btab199

N/A

0.373DataRank · unranked

11 citations

Fritz J. Sedlazeck, Qihui Zhu, Adam C. English, Ginger Metcalf, Hyun Min Kang +4 more

A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structure

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.15.540856

Top 49%

0.360DataRank

Top 49%5 citations

Marc Jan Bonder, Sabriya A. Syed, HGSVC Functional Analysis Working Group, Michael C. Zody, Mark J. P. Chaisson +7 more

JAX-CNV: A Whole-Genome Sequencing-Based Algorithm for Copy Number Detection at Clinical Grade Level

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2021.06.003

N/A

0.345DataRank · unranked

9 citations

Qihui Zhu, Xiaofei Yang, Silvia Liu, Eliza Cerveira, Mallory Ryan +6 more

Health care utilization and behavior changes after workplace genetic testing at a large US health care system

Genetics in Medicine(2024)10.1016/j.gim.2024.101160

N/A

0.330DataRank · unranked

8 citations

Subhamoy Pal, Jonathan M. Reader, Wendy R. Uhlmann, Sarah McCain, Kunal Sanghavi +30 more

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

Structural polymorphism and diversity of human segmental duplications

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.04.597452

N/A

0.312DataRank · unranked

7 citations

Philip C. Dishuck, DongAhn Yoo, William T. Harvey, Katherine M. Munson, Alexandra P. Lewis +8 more

Expectations and blind spots for structural variation detection from short-read alignment and long-read assembly

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.168831

N/A

0.292DataRank · unranked

6 citations

Ryan L. Collins, Wan-Ping Lee, Alexandra M. Weber, Yukyung Jun, Qihui Zhu +18 more

OSR1 disruption contributes to uterine factor infertility via impaired Müllerian duct development and endometrial receptivity

Journal of Clinical Investigation(2023)10.1172/jci161701

N/A

0.269DataRank · unranked

5 citations

Sidney Alcântara Pereira, Andrew Dauber, Jordana C. Bloom, Audrey N. Fontes, Naomi G. Asimow +13 more

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

Genome Research(2024)10.1101/gr.279419.124

N/A

0.165DataRank · unranked

2 citations

Marc Jan Bonder, Sabriya A. Syed, Matthew Jensen, HGSVC Functional Analysis Working Group, Mark Gerstein +9 more

SvAnna: efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.14.452267

N/A

0.165DataRank · unranked

2 citations

Julius O.B. Jacobsen, Parithi Balachandran, Qihui Zhu, Feyza Yilmaz, Justin T Reese +9 more

Multi-modal investigation of the schizophrenia-associated 3q29 genomic interval reveals global genetic diversity with unique haplotypes and segments that increase the risk for non-allelic homologous recombination

medRxiv(2021)10.1101/2021.11.10.21266197

N/A

0.165DataRank · unranked

2 citations

Gurusamy Umamaheswaran, Trenell J. Mosley, Yulia Mostovoy, Tamim H. Shaikh, Michael E. Zwick +4 more

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0.104DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

Contributors

Genomic and Personalized Medicine(2013)10.1016/b978-0-12-382227-7.00124-5

N/A

0DataRank · unranked

0 citations

Minhaz Uddin Ahmed, Sun Hee Ahn, R. Rand Allingham, Jude Alsarraj, Matthew L. Anderson +228 more

Development of a new diabetes medication self-efficacy scale and its association with both reported problems in using diabetes medications and self-reported adherence

UNC Libraries(2020)10.17615/9emh-nw06

N/A

0DataRank · unranked

0 citations

Doyle M. Cummings, Charles Lee, Ryan P. Hickson, Jennifer Scott, Stefanie P. Ferreri +5 more

Association of CNVs with methylation variation

npj Genomic Medicine(2020)10.1038/s41525-020-00145-w

N/A

0DataRank · unranked

36 citations

Saranya Radhakrishnan, Jia Wen, Jin Yun Chen, Junjie Chen, Brianna A. Lam +5 more

cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regions

Nature Methods(2025)10.1038/s41592-025-02919-5

N/A

0DataRank · unranked

0 citations

Yi Zhang, Xihao Li, Margaret Sunitha Selvaraj, Zilin Li, Hufeng Zhou +544 more

Contributors

Genomic and Personalized Medicine(2009)10.1016/b978-0-12-369420-1.00122-0

N/A

0DataRank · unranked

0 citations

Matthew L. Anderson, Felicita Andreotti, Brian H. Annex, Anthony Antonellis, Dmitri Artemov +272 more

Contributors

Essentials of Genomic and Personalized Medicine(2010)10.1016/b978-0-12-374934-5.00076-3

N/A

0DataRank · unranked

0 citations

Peter J. Barnes, Ivor J. Benjamin, Mark Boguski, Brigitta Bondy, Roger E. Breitbart +64 more

Encapsulated Allografts Preclude Host Sensitization and Promote Ovarian Endocrine Function in Ovariectomized Young Rhesus Monkeys and Sensitized Mice

Bioengineering(2023)10.3390/bioengineering10050550

N/A

0DataRank · unranked

7 citations

Colleen L. Flanagan, Anu David, Dennis J. Hartigan-O’Connor, Mayara Garcia de Mattos Barbosa, Michele L. Martinez +8 more

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569198

N/A

0DataRank · unranked

24 citations

Brandon D. Pickett, Robert S. Harris, Gabrielle A. Hartley, Monika Čechová, Karol Pal +78 more

Paleolithic Gene Duplications Primed Adaptive Evolution of Human Amylase Locus Upon Agriculture

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.27.568916

N/A

0DataRank · unranked

6 citations

Charikleia Karageorgiou, Kwondo Kim, Petar Pajic, Kendra Scheer, Christine R. Beck +4 more

Data from TMPRSS2:ERG Fusion-Associated Deletions Provide Insight into the Heterogeneity of Prostate Cancer

(2023)10.1158/0008-5472.c.6494447

N/A

0DataRank · unranked

0 citations

Francesca Demichelis, Rameen Beroukhim, Folke Schmidt, Juan‐Miguel Mosquera, Sunita R. Setlur +13 more

Data from TMPRSS2:ERG Fusion-Associated Deletions Provide Insight into the Heterogeneity of Prostate Cancer

(2023)10.1158/0008-5472.c.6494447.v1

N/A

0DataRank · unranked

0 citations

Francesca Demichelis, Rameen Beroukhim, Folke Schmidt, Juan‐Miguel Mosquera, Sunita R. Setlur +13 more

Lipid nanoparticle-mediated mRNA delivery to CD34+ cells in rhesus monkeys

Nature Biotechnology(2024)10.1038/s41587-024-02470-2

N/A

0DataRank · unranked

37 citations

Ryan Zenhausern, Kara Gentry, Liming Lian, Sebastian G. Huayamares, Afsane Radmand +16 more

Botulinum Neurotoxin Induces Neurotoxic Microglia Mediated by Exogenous Inflammatory Responses

Advanced Science(2024)10.1002/advs.202305326

N/A

0DataRank · unranked

10 citations

You Jung Kang, Khanh Do, Charles Lee, Bal Ram Singh, Hansang Cho +1 more

Unlocking the regulatory code of RNA: launching the Human RNome Project

Genome biology(2025)10.1186/s13059-025-03824-y

N/A

0DataRank · unranked

7 citations

Etienne Boileau, Janusz M. Bujnicki, Vivian G. Cheung, Silvestro G. Conticello, Peter C. Dedon +14 more

Workplace perk or pitfall? A qualitative study of genetic counselors' perspectives and experiences with workplace genetic testing

Journal of Genetic Counseling(2025)10.1002/jgc4.70016

N/A

0DataRank · unranked

4 citations

Katherine Hendy, Kerry A. Ryan, Anya E. R. Prince, W Feero, Alyx Vogle +7 more

Perceived understanding and psychosocial outcomes: employees’ responses to learning results of workplace genetic testing

Personalized Medicine(2025)10.1080/17410541.2025.2515003

N/A

0DataRank · unranked

1 citations

Sarah McCain, Alexandra Truhlar, Subhamoy Pal, Jonathan M. Reader, Kunal Sanghavi +11 more

Satellite DNA fragility accompanies complex genome rearrangements and ecDNA oncogene amplification in canine osteosarcomas

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.31.697157

N/A

0DataRank · unranked

1 citations

Wonyoung Kong, Sabriya A. Syed, Francis H. O’Neill, Jody T Lombardi, Patrick Kwok Shing Ng +3 more

Multidisciplinary stakeholder-informed identification of key characteristics for implementation of workplace genetic testing

Human Genetics and Genomics Advances(2025)10.1016/j.xhgg.2025.100458

N/A

0DataRank · unranked

0 citations

Kunal Sanghavi, Kerry A. Ryan, Alyx Vogle, Alexandra Truhlar, Subhamoy Pal +6 more

Genetic counselors’ perspectives and experiences with workplace genetic testing: Results of a national survey

Genetics in Medicine Open(2025)10.1016/j.gimo.2025.103483

N/A

0DataRank · unranked

0 citations

Elizabeth Charnysh, Subhamoy Pal, Jonathan M. Reader, Katherine Hendy, W. Gregory Feero +32 more

Charles Lee

Indexed papers

Top data-sharing exemplar

Papers