Abeed Sarker

MedicineComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.3Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An aspect-level sentiment analysis dataset for therapies on Twitter

Data in Brief(2023)10.1016/j.dib.2023.109618

Top 20%

1.0DataRank

Top 20%12 citations

Sudeshna Das, Sahithi Lakamana, Abeed Sarker, Yuting Guo

Papers

Driven by 43 papers — median percentile 79. Top paper: “An aspect-level sentiment analysis dataset for therapies on Twitter”.

An aspect-level sentiment analysis dataset for therapies on Twitter

Data in Brief(2023)10.1016/j.dib.2023.109618

Top 20%

1.0DataRank

Top 20%12 citations

Sudeshna Das, Sahithi Lakamana, Abeed Sarker, Yuting Guo

Overview of the 8th Social Media Mining for Health Applications (#SMM4H) shared tasks at the AMIA 2023 Annual Symposium

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae010

Top 21%

0.943DataRank

Top 21%16 citations

Juan M. Banda, Yuting Guo, Ana Lucía Schmidt, Dongfang Xu, Ivan Amaro +4 more

Reddit discussions about buprenorphine associated precipitated withdrawal in the era of fentanyl

medRxiv(2021)10.1101/2021.09.24.21264090

N/A

0.839DataRank · unranked

9 citations

Abeed Sarker, Whitney Hogg-Bremer, Jennifer S Love, Nicole H. O’Donnell, Lewis S. Nelson +2 more

Reddit discussions about buprenorphine associated precipitated withdrawal in the era of fentanyl

Clinical Toxicology(2022)10.1080/15563650.2022.2032730

N/A

0.631DataRank · unranked

66 citations

Abeed Sarker, Whitney Hogg-Bremer, Jennifer S. Love, Nicole H. O’Donnell, Lewis S. Nelson +2 more

Self-reported Xylazine Experiences: A Mixed-methods Study of Reddit Subscribers

Journal of Addiction Medicine(2023)10.1097/adm.0000000000001216

N/A

0.593DataRank · unranked

51 citations

Karen O’Connor, Sahithi Lakamana, Abeed Sarker, Rachel Wightman, Jennifer S. Love +2 more

A large language model–based generative natural language processing framework fine‐tuned on clinical notes accurately extracts headache frequency from electronic health records

Headache The Journal of Head and Face Pain(2024)10.1111/head.14702

N/A

0.568DataRank · unranked

43 citations

Man Luo, Gina Dumkrieger, Shubham Trivedi, Yi‐Chieh Chen, Chieh‐Ju Chao +4 more

LexExp: a system for automatically expanding concept lexicons for noisy biomedical texts

Bioinformatics(2020)10.1093/bioinformatics/btaa995

N/A

0.477DataRank · unranked

23 citations

Abeed Sarker

Two-Layer Retrieval-Augmented Generation Framework for Low-Resource Medical Question Answering Using Reddit Data: Proof-of-Concept Study

Journal of Medical Internet Research(2024)10.2196/66220

N/A

0.457DataRank · unranked

20 citations

Yao Ge, Yuting Guo, Swati Rajwal, JaMor Hairston, Jeanne M. Powell +17 more

Utilizing a multi-class classification approach to detect therapeutic and recreational misuse of opioids on Twitter

Computers in Biology and Medicine(2020)10.1016/j.compbiomed.2020.104132

N/A

0.457DataRank · unranked

20 citations

Mohammed Ali Al-Garadi, Osama Elsankary, Jeanmarie Perrone, William C. Becker, Abeed Sarker +1 more

Large-Scale Social Media Analysis Reveals Emotions Associated with Nonmedical Prescription Drug Use

Health Data Science(2022)10.34133/2022/9851989

N/A

0.442DataRank · unranked

18 citations

Yuan‐Chi Yang, Yuting Guo, Sangmi Kim, Jennifer S. Love, Jeanmarie Perrone +2 more

Overview of the 8 th Social Media Mining for Health Applications (#SMM4H) Shared Tasks at the AMIA 2023 Annual Symposium

medRxiv(2023)10.1101/2023.11.06.23298168

N/A

0.330DataRank · unranked

8 citations

Juan M. Banda, Yuting Guo, Ana Lucía Schmidt, Dongfang Xu, Jesus Ivan Flores Amaro +4 more

An analysis of cannabinoid hyperemesis syndrome Reddit posts and themes

Clinical Toxicology(2023)10.1080/15563650.2023.2183790

Top 56%

0.286DataRank

Top 56%4 citations

Jeanmarie Perrone, Alexandra B. Collins, Sahithi Lakamana, Abeed Sarker, Rachel Wightman

Applications of Natural Language Processing and Large Language Models for Social Determinants of Health: Protocol for a Systematic Review

JMIR Research Protocols(2024)10.2196/66094

N/A

0.269DataRank · unranked

5 citations

Ziyuan Zhang, Yankai Chen, Hannah Rogers, Abeed Sarker, Yunyu Xiao +1 more

Advances in Text Mining and Visualization for Precision Medicine

Biocomputing 2018(2017)10.1142/9789813235533_0051

N/A

0.165DataRank · unranked

2 citations

Abeed Sarker, Karen O’Connor, Hongfang Liu, Graciela Gonzalez‐Hernandez, Casey S. Greene +1 more

Automating inductive thematic analyses of health content using large language models: a proof-of-concept study using social media data

JAMIA Open(2025)10.1093/jamiaopen/ooaf102

N/A

0.165DataRank · unranked

2 citations

Ritvik Ranjan, Sahithi Lakamana, Anthony Spadaro, Selen Bozkurt, Jeanmarie Perrone +2 more

Retrieval augmented generation based dynamic prompting for few-shot biomedical named entity recognition using large language models

Research Square(2025)10.21203/rs.3.rs-7216581/v1

N/A

0.104DataRank · unranked

1 citations

Sudeshna Das, Yuting Guo, Abeed Sarker, Yao Ge

Machine Learning and Natural Language Processing to Improve Classification of Atrial Septal Defects in Electronic Health Records

Birth Defects Research(2025)10.1002/bdr2.2451

N/A

0.104DataRank · unranked

1 citations

Haoming Shi, Wendy Book, Lindsey C. Ivey, Fred H. Rodriguez, Reza Sameni +5 more

Barriers to opioid use disorder treatment: A comparison of self-reported information from social media with barriers found in literature

Frontiers in Public Health(2023)10.3389/fpubh.2023.1141093

N/A

0DataRank · unranked

29 citations

Karma Plaisance, Andrew Walker, Matthew Bonn, Jennifer S. Love, Jeanmarie Perrone +2 more

Characteristics of Intimate Partner Violence and Survivor’s Needs During the COVID-19 Pandemic: Insights From Subreddits Related to Intimate Partner Violence

Journal of Interpersonal Violence(2023)10.1177/08862605231168816

N/A

0DataRank · unranked

18 citations

Elise Warren, Tasfia Jahangir, Mohammed Ali Al-Garadi, Yuting Guo, Yuan‐Chi Yang +3 more

A framework for multi-faceted content analysis of social media chatter regarding non-medical use of prescription medications

BMC Digital Health(2023)10.1186/s44247-023-00029-w

N/A

0DataRank · unranked

16 citations

Brian Schwartz, Sahithi Lakamana, Yao Ge, Abeed Sarker, Shaina Raza

Can accurate demographic information about people who use prescription medications nonmedically be derived from Twitter?

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2207391120

N/A

0DataRank · unranked

9 citations

Mohammed Ali Al-Garadi, Jennifer S. Love, Hannah L. F. Cooper, Jeanmarie Perrone, Abeed Sarker +1 more

Comparison of Pretraining Models and Strategies for Health-Related Social Media Text Classification

Healthcare(2022)10.3390/healthcare10081478

N/A

0DataRank · unranked

16 citations

Yao Ge, Yuan‐Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker, Yuting Guo

Self-reported Xylazine Experiences: A Mixed Methods Study of Reddit Subscribers

medRxiv(2023)10.1101/2023.03.13.23287215

N/A

0DataRank · unranked

12 citations

Karen O’Connor, Sahithi Lakamana, Abeed Sarker, Rachel Wightman, Jennifer S Love +2 more

Large-scale social media language analysis reveals emotions and behaviours associated with nonmedical prescription drug use

medRxiv(2021)10.1101/2021.09.20.21263856

N/A

0DataRank · unranked

0 citations

Yuan‐Chi Yang, Yuting Guo, Sangmi Kim, Jennifer S. Love, Jeanmarie Perrone +2 more

Text Classification Models for the Automatic Detection of Nonmedical Prescription Medication Use from Social Media

Research Square(2021)10.21203/rs.3.rs-58679/v2

N/A

0DataRank · unranked

1 citations

Yuan‐Chi Yang, Haitao Cai, Yucheng Ruan, Karen O’Connor, Graciela Gonzalez‐Hernandez +3 more

Evaluating large language models for health-related text classification tasks with public social media data

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae210

N/A

0DataRank · unranked

51 citations

Anthony Ovadje, Mohammed Ali Al-Garadi, Abeed Sarker, Yuting Guo

Comparison of pretraining models and strategies for health-related social media text classification

medRxiv(2021)10.1101/2021.09.28.21264253

N/A

0DataRank · unranked

5 citations

Yao Ge, Yuan‐Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker, Yuting Guo

Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021

(2021)10.18653/v1/2021.smm4h-1.4

N/A

0DataRank · unranked

76 citations

Ari Z Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov +11 more

CARE-SD: classifier-based analysis for recognizing provider stigmatizing and doubt marker labels in electronic health records: model development and validation

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae310

N/A

0DataRank · unranked

11 citations

Annie Thorne, Sudeshna Das, Jennifer S. Love, Hannah L. F. Cooper, Melvin D. Livingston +2 more

Methadone and Suboxone ® mentions on Twitter: Thematic and Sentiment Analysis

medRxiv(2020)10.1101/2020.06.19.20135962

N/A

0DataRank · unranked

2 citations

Jeanmarie Perrone, J.S. Love, Rachel Graves, Whitney Hogg-Bremer, Abeed Sarker +1 more

Text Classification Models for the Automatic Detection of Nonmedical Prescription Medication Use from Social Media

medRxiv(2020)10.1101/2020.04.13.20064089

N/A

0DataRank · unranked

13 citations

Yuan‐Chi Yang, Haitao Cai, Yucheng Ruan, Karen O’Connor, Graciela Gonzalez‐Hernandez +3 more

Detection of Medication Mentions and Medication Change Events in Clinical Notes Using Transformer-Based Models

Studies in health technology and informatics(2024)10.3233/shti231052

N/A

0DataRank · unranked

3 citations

Yao Ge, Abeed Sarker, Yuting Guo

Can adverse childhood experiences predict chronic health conditions? Development of trauma-informed, explainable machine learning models

Frontiers in Public Health(2024)10.3389/fpubh.2023.1309490

N/A

0DataRank · unranked

2 citations

Tasfia Jahangir, Yiyang Mei, Annabelle Madden, Abeed Sarker, Sangmi Kim +1 more

Geolocation-Centric Monitoring and Characterization of Social Media Chatter for Public Health

The MIT Press eBooks(2024)10.7551/mitpress/15532.003.0016

N/A

0DataRank · unranked

0 citations

Abeed Sarker

Overview of the 9th Social Media Mining for Health Applications (#SMM4H) Shared Tasks at ACL 2024 – Large Language Models and Generalizability for Social Media NLP

HAL (Le Centre pour la Communication Scientifique Directe)(2024)10.18653/v1/2024.smm4h-1.40

N/A

0DataRank · unranked

0 citations

Guillermo López-García, Lisa Raithel, Philippe Thomas, Roland Roller, Eiji Aramaki +19 more

“I Been Taking Adderall Mixing it With Lean, Hope I Don’t Wake Up Out My Sleep”: Harnessing Twitter to Understand Nonmedical Prescription Stimulant Use among Black Women and Men Subscribers

medRxiv(2024)10.1101/2024.12.03.24318408

N/A

0DataRank · unranked

0 citations

Sahithi Lakamana, Yao Ge, Abeed Sarker, Joni-Leigh Webster

Building community through data: the value of a researcher driven open science ecosystem

Pain Medicine(2025)10.1093/pm/pnaf003

N/A

0DataRank · unranked

7 citations

Carla Bann, Emine O. Bayman, Maria T. Chao, Georgene W. Hergenroeder, Charles Knott +13 more

Inference Gap in Domain Expertise and Machine Intelligence in Named Entity Recognition: Creation of and Insights from a Substance Use-related Dataset

PubMed(2025)10.1142/9789819824755_0002

N/A

0DataRank · unranked

0 citations

Jeanne M. Powell, Azra Ismail, Jeanmarie Perrone, Abeed Sarker, Sumon Kanti Dey

Elucidating Delays in Illness Recognition, Healthcare Seeking, and Healthcare Provision for Stillbirths and Neonatal Deaths in Seven Low- and Middle-Income Countries

medRxiv(2025)10.1101/2025.10.07.25337535

N/A

0DataRank · unranked

1 citations

Namrata Ramakrishna, Zachary J. Madewell, Victor Akelo, Hellen Muttai, Christopher Mugah +37 more

Characterization of Reddit Posts on Nitazenes

Drug and Alcohol Dependence(2025)10.1016/j.drugalcdep.2024.111433

N/A

0DataRank · unranked

0 citations

Jennifer S. Love, JaMor Hairston, Sahithi Lakamana, Abeed Sarker, Jeanmarie Perrone

Few-shot learning for medical text: A review of advances, trends, and opportunities

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104458

N/A

0DataRank · unranked

100 citations

Yuting Guo, Sudeshna Das, Mohammed Ali Al-Garadi, Abeed Sarker, Yao Ge

Can accurate demographic information about people who use prescription medications non-medically be derived from Twitter?

medRxiv(2022)10.1101/2022.04.27.22274390

N/A

0DataRank · unranked

1 citations

Mohammed Ali Al-Garadi, Jennifer S. Love, Hannah L. F. Cooper, Jeanmarie Perrone, Abeed Sarker +1 more

A comparison of few-shot and traditional named entity recognition models for medical text

2022 IEEE 10th International Conference on Healthcare Informatics (ICHI)(2022)10.1109/ichi54592.2022.00024

N/A

0DataRank · unranked

9 citations

Yuting Guo, Yuan‐Chi Yang, Mohammed Ali Al-Garadi, Abeed Sarker, Yao Ge

Abeed Sarker

Indexed papers

Top data-sharing exemplar

Papers