Tomiko Oskotsky

Also affiliated with University of California, San Francisco, Bavarian Research Institute for Digital Transformation

MedicineNeuroscienceImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.553Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

VMAP: Vaginal Microbiome Atlas during Pregnancy

JAMIA Open(2024)10.1093/jamiaopen/ooae099

Top 56%

0.290DataRank

Top 56%5 citations

Tomiko Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang +19 more

Papers

Driven by 45 papers — median percentile 0. Top paper: “Leveraging electronic health records and knowledge networks for Alzheimer’s disease prediction and sex-specific biological insights”.

Leveraging electronic health records and knowledge networks for Alzheimer’s disease prediction and sex-specific biological insights

Nature Aging(2024)10.1038/s43587-024-00573-8

N/A

2.1DataRank · unranked

76 citations

Katherine P. Rankin, Gabriel Cerono, Silvia Miramontes, Hunter Mills, Jacquelyn Roger +16 more

Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants

JAMA Network Open(2021)10.1001/jamanetworkopen.2021.33090

N/A

0.741DataRank · unranked

139 citations

Ivana Marić, Alice Tang, Boris Oskotsky, Ronald J. Wong, Nima Aghaeepour +3 more

Discovery of sparse, reliable omic biomarkers with Stabl

Nature Biotechnology(2024)10.1038/s41587-023-02033-x

N/A

0.655DataRank · unranked

78 citations

Ivana Marić, Grégoire Bellan, Jakob Einhaus, Dyani Gaudillière, François-Xavier Ladant +23 more

Harnessing EHR data for health research

Nature Medicine(2024)10.1038/s41591-024-03074-8

N/A

0.639DataRank · unranked

70 citations

Sarah Woldemariam, Silvia Miramontes, Beau Norgeot, Tomiko Oskotsky, Marina Sirota +1 more

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

Scientific Reports(2021)10.1038/s41598-021-91625-1

N/A

0.601DataRank · unranked

54 citations

Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu +10 more

Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women With Alzheimer’s Disease

Frontiers in Aging Neuroscience(2021)10.3389/fnagi.2021.735611

N/A

0.598DataRank · unranked

53 citations

Stella Belonwu, Jason K. Wang, Tomiko Oskotsky, Aarzu Gupta, Alice Taubes +6 more

Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis

Frontiers in Immunology(2021)10.3389/fimmu.2021.638066

N/A

0.578DataRank · unranked

46 citations

Jessica Neely, Tomiko Oskotsky, Steven Yu, Noah Perlmutter, Joanne Nititham +7 more

Real world perspectives on endometriosis disease phenotyping through surgery, omics, health data, and artificial intelligence

npj Women s Health(2025)10.1038/s44294-024-00052-w

N/A

0.569DataRank · unranked

17 citations

Tomiko Oskotsky, Joshua F. Robinson, Susan J. Fisher, Angie Tsuei, Binya Liu +6 more

Data-driven longitudinal characterization of neonatal health and morbidity

Science Translational Medicine(2023)10.1126/scitranslmed.adc9854

N/A

0.557DataRank · unranked

40 citations

Jonathan D. Reiss, Jacquelyn Roger, Alice Tang, Alan L. Chang, Martin Becker +28 more

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101350

N/A

0.546DataRank · unranked

37 citations

Tomiko Oskotsky, Alice Tang, Alennie Roldan, Verena Chung, Connie Ha +56 more

Identifying therapeutic candidates for endometriosis through a transcriptomics-based drug repositioning approach

iScience(2024)10.1016/j.isci.2024.109388

N/A

0.498DataRank · unranked

14 citations

Arohee Bhoja, Daniel Bunis, Brian L. Le, Alice Tang, Idit Kosti +16 more

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.23.352666

N/A

0.426DataRank · unranked

7 citations

Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu +10 more

Mondo: integrating disease terminology across communities

Genetics(2025)10.1093/genetics/iyaf215

N/A

0.425DataRank · unranked

16 citations

Sabrina Toro, Nicolas A Matentzoglu, Joseph E Flack, Kathleen R. Mullen, Harshad Hegde +95 more

Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011050

N/A

0.403DataRank · unranked

11 citations

Tomiko Oskotsky, Ivana Marić, Shruti Kaushal, Takako Takeda, Viktor Horváth +18 more

Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women with Alzheimer’s Disease

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.24.060558

N/A

0.330DataRank · unranked

8 citations

Stella Belonwu, Jason K. Wang, Tomiko Oskotsky, Aarzu Gupta, Alice Taubes +7 more

Exposure to autoimmune disorders is associated with increased Alzheimer’s disease risk in a multi-site electronic health record analysis

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.101980

N/A

0.312DataRank · unranked

7 citations

Alice Tang, Thanaphong Phongpreecha, Monica Yang, Sarah Woldemariam, Tomiko Oskotsky +7 more

Leveraging Electronic Medical Records and Knowledge Networks to Predict Disease Onset and Gain Biological Insight Into Alzheimer’s Disease

medRxiv(2023)10.1101/2023.03.14.23287224

N/A

0.306DataRank · unranked

5 citations

Katherine P. Rankin, Gabriel Cerono, Silvia Miramontes, Hunter Mills, Jacquelyn Roger +15 more

Data-driven insights can transform women’s reproductive health

npj Women s Health(2024)10.1038/s44294-024-00019-x

N/A

0.292DataRank · unranked

6 citations

Ophelia Yin, Umair Khan, Leen Arnaout, Marina Sirota, Tomiko Oskotsky

Pre-conception clinical risk factors differ between spontaneous and indicated preterm birth in a densely phenotyped EHR cohort

BMC Pregnancy and Childbirth(2025)10.1186/s12884-025-07166-2

N/A

0.292DataRank · unranked

6 citations

Hannah Takasuka, Jacquelyn Roger, Ophelia Yin, Alice Tang, Tomiko Oskotsky +3 more

VMAP: Vaginal Microbiome Atlas during Pregnancy

JAMIA Open(2024)10.1093/jamiaopen/ooae099

Top 56%

0.290DataRank

Top 56%5 citations

Tomiko Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang +19 more

VMAP: Vaginal Microbiome Atlas During Pregnancy

medRxiv(2023)10.1101/2023.03.21.23286947

Top 59%

0.263DataRank

Top 59%3 citations

Tomiko Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang +19 more

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

Research Square(2021)10.21203/rs.3.rs-333578/v1

N/A

0.241DataRank · unranked

4 citations

Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu +10 more

Sex-stratified single-cell RNA-Seq analysis identifies sex-specific and cell type-specific transcriptional responses in Alzheimer’s disease across two brain regions.

Research Square(2021)10.21203/rs.3.rs-418653/v1

N/A

0.241DataRank · unranked

4 citations

Yaqiao Li, Daniel Bunis, Arjun A. Rao, Caroline Warly Solsberg, Alice Tang +5 more

Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women with Alzheimer's Disease

Research Square(2020)10.21203/rs.3.rs-29773/v1

N/A

0.232DataRank · unranked

3 citations

Stella Belonwu, Jason K. Wang, Tomiko Oskotsky, Aarzu Gupta, Alice Taubes +6 more

Leveraging electronic health records to identify risk factors for recurrent pregnancy loss across two medical centers: a case-control study

Research Square(2023)10.21203/rs.3.rs-2631220/v2

N/A

0.208DataRank · unranked

3 citations

Feng Xie, J Costello, Alice Tang, Jay Liu, Tomiko Oskotsky +15 more

Comorbidity analysis and clustering of endometriosis patients using electronic health records

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102245

N/A

0.208DataRank · unranked

3 citations

Tomiko Oskotsky, Bahar D. Yilmaz, Jacquelyn Roger, Ketrin Gjoni, Juan C. Irwin +5 more

Leveraging electronic health records to identify risk factors for recurrent pregnancy loss across two medical centers: a case-control study

Research Square(2023)10.21203/rs.3.rs-2631220/v1

N/A

0.208DataRank · unranked

2 citations

Feng Xie, J Costello, Alice Tang, Jay Liu, Tomiko Oskotsky +14 more

Applying a computational transcriptomics-based drug repositioning pipeline to identify therapeutic candidates for endometriosis

medRxiv(2022)10.1101/2022.12.20.22283736

N/A

0.165DataRank · unranked

2 citations

Arohee Bhoja, Daniel Bunis, Brian L. Le, Idit Kosti, Christine Li +14 more

Cross-Tissue Transcriptomic Analysis Leveraging Machine Learning Approaches Identifies New Biomarkers for Rheumatoid Arthritis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.24.220483

N/A

0.165DataRank · unranked

2 citations

Jessica Neely, Tomiko Oskotsky, Steven Yu, Noah Perlmutter, Joanne Nititham +7 more

AI-Driven Longitudinal Characterization of Neonatal Health and Morbidity

medRxiv(2022)10.1101/2022.03.31.22273233

N/A

0.104DataRank · unranked

1 citations

Jonathan D. Reiss, Jacquelyn Roger, Alice Tang, Alan L. Chang, Martin Becker +28 more

A Transcriptomics-Based Computational Drug Repurposing Pipeline Identifies Simvastatin And Primaquine As Therapeutics For Endometriosis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.28.656743

N/A

0.104DataRank · unranked

1 citations

Xinyu Tang, Erin Arthurs, Arpita Govil, Ferheen Abbasi, Arohee Bhoja +11 more

Delirium in hospitalized COVID-19 patients is associated with dynamic changes in peripheral immune gene expression

GeroScience(2025)10.1007/s11357-025-01898-x

N/A

0DataRank · unranked

0 citations

Naoki Takegami, Rubinee Simmasalam, Abiya Baqai, Elena Munoz, Anya Sikri +18 more

Mapping Chemical-Gene Interactions for Developmental Lethality and Pregnancy Loss

medRxiv(2025)10.1101/2025.10.03.25337209

Top 100%

0DataRank

Top 100%0 citations

Amrita Nagasuri, Boris Oskotsky, Leen Arnaout, Polina Minkovski, Gonçalo dos Santos Correia +9 more

The Human Intolerome: a curated database to prioritize genomic variants in stillbirth, pregnancy loss, and neonatal death

medRxiv(2025)10.1101/2025.10.08.25336895

Top 100%

0DataRank

Top 100%0 citations

Amrita Nagasuri, Vishal Soman, Aryo Garakani, Mona Amin‐Beidokhti, Uma Chandran +17 more

Sex-stratified phenotyping of comorbidities associated with an inpatient delirium diagnosis using real world data

medRxiv(2023)10.1101/2023.11.02.23297925

Top 100%

0DataRank

Top 100%0 citations

Sarah Woldemariam, Alice Tang, Yaqiao Li, Tomiko Oskotsky, Eva Raphael +2 more

REWRITING THE ENDOMETRIAL CODE: META-ANALYSIS OF EUTOPIC ENDOMETRIUM REVEALS REPURPOSABLE THERAPEUTICS FOR ADENOMYOSIS

Fertility and Sterility(2025)10.1016/j.fertnstert.2025.07.320

N/A

0DataRank · unranked

0 citations

Romina Appierdo, Tomiko Oskotsky, Linda C. Giudice, Marina Sirota, Bahar D. Yilmaz

A scalable platform for acquisition of high-fidelity human intracranial EEG with minimal clinical burden

PLoS ONE(2024)10.1371/journal.pone.0305009

N/A

0DataRank · unranked

2 citations

Tomiko Oskotsky, Paul Nuyujukian, Lisa Yamada

Sex-stratified analyses of comorbidities associated with an inpatient delirium diagnosis using real world data

Research Square(2024)10.21203/rs.3.rs-4765249/v1

N/A

0DataRank · unranked

0 citations

Lay Kodama, Sarah Woldemariam, Alice Tang, Yaqiao Li, John Kornak +4 more

Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women with Alzheimer's Disease

Research Square(2020)10.21203/rs.3.rs-88940/v1

N/A

0DataRank · unranked

0 citations

Stella Belonwu, Jason K. Wang, Tomiko Oskotsky, Aarzu Gupta, Alice Taubes +6 more

Compression-Enabled Joint Entropy Estimation for Seizure Detection on Human Intracortical Electroencephalography

IEEE Transactions on Biomedical Engineering(2025)10.1109/tbme.2025.3563789

N/A

0DataRank · unranked

3 citations

Tomiko Oskotsky, Paul Nuyujukian, Lisa Yamada

Peripheral blood mononuclear cell transcriptomic trajectories reveal dynamic regulation of inflammatory actors in delirium

medRxiv(2025)10.1101/2025.02.14.25322163

N/A

0DataRank · unranked

0 citations

Naoki Takegami, Rubinee Simmasalam, Abiya Baqai, Elena Munoz, Anya Sikri +18 more

Transcriptomic comparison of early onset preeclampsia and placenta accreta identifies inverse trophoblast and decidua functions at the maternal-fetal interface

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.09.653201

N/A

0DataRank · unranked

0 citations

Ana Almonte-Loya, Romina Appierdo, Monica Yang, Bahar D. Yilmaz, Tomiko Oskotsky +5 more

Comorbidities associated with a clinically-recognized delirium diagnosis in the hospital using real world data

Communications Medicine(2025)10.1038/s43856-025-00986-5

N/A

0DataRank · unranked

0 citations

Sarah Woldemariam, Alice Tang, Yaqiao Li, John Kornak, Isabel Elaine Allen +4 more

Anticlustering for sample allocation to minimize batch effects

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101137

N/A

0DataRank · unranked

0 citations

Cheng Wang, Maïgane Diop, Syed Bukhari, Boris Oskotsky, Brittany Davidson +12 more

Leveraging electronic health records from two hospital systems identifies male infertility-associated comorbidities across time

Communications Medicine(2025)10.1038/s43856-025-01071-7

N/A

0DataRank · unranked

0 citations

Feng Xie, Alennie Roldan, Jacquelyn Roger, Alice Tang, Tomiko Oskotsky +8 more

Tomiko Oskotsky

Indexed papers

Top data-sharing exemplar

Papers