W. Jim Zheng

The University of Texas Health Science Center

Also affiliated with The University of Texas Health Science Center at Houston

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.7Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications(2019)10.1038/s41467-019-09799-2

Top 4%

5.0DataRank

Top 4%368 citations

Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan +426 more

Papers

Driven by 38 papers — median percentile 57. Top paper: “Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen”.

Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen

Nature Communications(2019)10.1038/s41467-019-09799-2

Top 4%

5.0DataRank

Top 4%368 citations

Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan +426 more

Benchmarking large language models for biomedical natural language processing applications and recommendations

Nature Communications(2025)10.1038/s41467-025-56989-2

N/A

2.5DataRank · unranked

139 citations

Yan Hu, Xueqing Peng, Qianqian Xie, Qiao Jin, Aidan Gilson +16 more

The IL6/JAK/STAT3 signaling axis is a therapeutic vulnerability in SMARCB1-deficient bladder cancer

Nature Communications(2024)10.1038/s41467-024-45132-2

N/A

0.988DataRank · unranked

35 citations

Karthik Reddy Kami Reddy, Yang Yuntao, Yuen San Chan, Danthasinghe Waduge Badrajee Piyarathna, Lacey E. Dobrolecki +19 more

Virome assembly and annotation in brain tissue based on next‐generation sequencing

Cancer Medicine(2020)10.1002/cam4.3325

N/A

0.539DataRank · unranked

8 citations

Xiaohua Ye, Lisha Zhu, Ningyan Zhang, Zhiqiang An, W. Jim Zheng +1 more

Peripheral blood gene expression profiling shows predictive significance for response to mycophenolate in systemic sclerosis-related interstitial lung disease

Annals of the Rheumatic Diseases(2022)10.1136/annrheumdis-2021-221313

N/A

0.524DataRank · unranked

32 citations

Elizabeth R. Volkmann, W. Jim Zheng, Xuan Wang, Holly Wilhalme, Marka A. Lyons +3 more

Human Endogenous Retroviruses in Glioblastoma Multiforme

Microorganisms(2021)10.3390/microorganisms9040764

N/A

0.442DataRank · unranked

18 citations

Yuntao Yang, Ningyan Zhang, Claudio Soto, Xiaoqian Jiang, Zhiqiang An +2 more

ASpdb: an integrative knowledgebase of human protein isoforms from experimental and AI-predicted structures

Nucleic Acids Research(2024)10.1093/nar/gkae1018

Top 43%

0.434DataRank

Top 43%8 citations

Himansu Kumar, Yuhan Xie, Li Zhao, Rongbin Li, Wenbo Chen +10 more

A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa123

N/A

0.396DataRank · unranked

13 citations

Jay Shi, Yuntao Yang, W. Jim Zheng, Licong Cui, Fengbo Zheng

Wnt-directed CXCL12-expressing apical papilla progenitor cells drive tooth root formation

Nature Communications(2025)10.1038/s41467-025-61048-x

N/A

0.312DataRank · unranked

7 citations

Gaurav Gadhvi, Taishi Komori, Yuki Arai, Hiroaki Manabe, Angel Ka Yan Chu +12 more

An evidence-based lexical pattern approach for quality assurance of Gene Ontology relations

Briefings in Bioinformatics(2022)10.1093/bib/bbac122

N/A

0.312DataRank · unranked

7 citations

Yuntao Yang, Mason Bartels, W. Jim Zheng, Licong Cui, Rashmie Abeysinghe

The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.26.513573

Top 54%

0.312DataRank

Top 54%7 citations

Maryann E. Martone, Patrick R. Hof, Ed S. Lein, Aviv Regev, Giorgio A. Ascoli +94 more

Systematic characterization of protein structural features of alternative splicing isoforms using AlphaFold 2

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.30.578053

N/A

0.262DataRank · unranked

2 citations

Yuhan Xie, Li Zhao, Chiamaka S Diala, Meer A. Ali, Rongbin Li +8 more

CNGPLD: case–control copy-number analysis using Gaussian process latent difference

Bioinformatics(2022)10.1093/bioinformatics/btac096

N/A

0.165DataRank · unranked

2 citations

Ruoxing Li, Peter Müller, W. Jim Zheng, Kim‐Anh Do, Shiaw‐Yih Lin +2 more

SAFER: sub-hypergraph attention-based neural network for predicting effective responses to dose combinations

Research Square(2024)10.21203/rs.3.rs-4308618/v1

N/A

0.104DataRank · unranked

1 citations

Rongbin Li, Jing Tang, W. Jim Zheng, Xiaoqian Jiang, yiching tang

Gene expression dynamic analysis reveals co-activation of Sonic Hedgehog and epidermal growth factor followed by dynamic silencing

Oncotarget(2020)10.18632/oncotarget.27547

N/A

0DataRank · unranked

5 citations

Pankil Shah, Arvand Asghari, Nan Deng, Rosemarie N.U. Le, Juan Camilo Ramírez +5 more

A novel group of genes that cause endocrine resistance in breast cancer identified by dynamic gene expression analysis

Oncotarget(2022)10.18632/oncotarget.28225

N/A

0DataRank · unranked

9 citations

Katherine Wall, Michael Gill, Natascha Del Vecchio, Farnaz Allahbakhsh, Jacky Wu +6 more

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Journal of Medical Internet Research(2020)10.2196/16981

N/A

0DataRank · unranked

57 citations

Hangyu Ji, Yujia Zhou, Fang Li, Jingcheng Du, Laila Rasmy +7 more

Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review

Journal of Biomedical Informatics(2020)10.1016/j.jbi.2020.103671

N/A

0DataRank · unranked

241 citations

Jingcheng Du, Li Zhao, Xiaoqian Jiang, Timothy A. Miller, Fei Wang +3 more

GPU accelerated estimation of a shared random effect joint model for dynamic prediction

Computational Statistics & Data Analysis(2022)10.1016/j.csda.2022.107528

N/A

0DataRank · unranked

0 citations

Li Zhao, Lan Lan, Jieyi Zhao, W. Jim Zheng, Liang Li +1 more

Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.05.519089

N/A

0DataRank · unranked

0 citations

Shounak Bhogale, Lisha Zhu, Derrick Thomas, Jéssica Wildgrube Bertól, W. Jim Zheng +3 more

Prediction of Brain Metastases Development in Patients With Lung Cancer by Explainable Artificial Intelligence From Electronic Health Records

JCO Clinical Cancer Informatics(2023)10.1200/cci.22.00141

N/A

0DataRank · unranked

9 citations

Rongbin Li, Yujia Zhou, Laila Rasmy, Degui Zhi, Ping Zhu +6 more

Representation Learning of Biological Concepts: A Systematic Review

Current Bioinformatics(2023)10.2174/1574893618666230612161210

N/A

0DataRank · unranked

6 citations

Xu Zuo, Avisha Das, Hua Xu, W. Jim Zheng, Yuntao Yang

Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases

Research Square(2023)10.21203/rs.3.rs-3037310/v1

N/A

0DataRank · unranked

0 citations

Shounak Bhogale, Lisha Zhu, Derrick Thomas, Jéssica Wildgrube Bertól, W. Jim Zheng +3 more

Distinct Profiles of Specialized Pro-resolving Lipid Mediators and Corresponding Receptor Gene Expression in Periodontal Inflammation

Frontiers in Immunology(2020)10.3389/fimmu.2020.01307

N/A

0DataRank · unranked

42 citations

Nishantha R. Bokka, Krishna Rao Maddipati, Srinivas Ayilavarapu, Robin Weltman, Lisha Zhu +6 more

Ensemble pretrained language models to extract biomedical knowledge from literature

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae061

N/A

0DataRank · unranked

19 citations

Qiang Wei, Liang‐Chin Huang, Jianfu Li, Yan Hu, Yao-Shun Chuang +11 more

Yeast Sphingolipid Phospholipase Gene ISC1 Regulates the Spindle Checkpoint by a CDC55 -Dependent Mechanism

Molecular and Cellular Biology(2020)10.1128/mcb.00340-19

N/A

0DataRank · unranked

11 citations

Bachar H. Hassan, Jihui Ren, Ashraf A. Shamssedine, Eunmi Jeong, Baasil Shariff +10 more

Transcriptional signature of durable effector T cells elicited by a replication defective HCMV vaccine

npj Vaccines(2024)10.1038/s41541-024-00860-w

N/A

0DataRank · unranked

7 citations

David Shih, Zhiqiang Ku, Junping Hong, Diane F. Barrett, Richard Rupp +5 more

Aging- and alcohol-associated spatial transcriptomic signature in mouse acute pancreatitis reveals heterogeneity of inflammation and potential pathogenic factors

Journal of Molecular Medicine(2024)10.1007/s00109-024-02460-6

N/A

0DataRank · unranked

5 citations

Yuntao Yang, Isabella E Hernandez, Amy Qin, Jiajing Li, Yinjie Zhang +11 more

SAFER: sub-hypergraph attention-based neural network for predicting effective responses to dose combinations

BMC Bioinformatics(2024)10.1186/s12859-024-05873-9

N/A

0DataRank · unranked

4 citations

Rongbin Li, Jing Tang, W. Jim Zheng, Xiaoqian Jiang, Yi-Ching Tang

Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases

Human Molecular Genetics(2024)10.1093/hmg/ddae109

N/A

0DataRank · unranked

1 citations

Shounak Bhogale, Lisha Zhu, Derrick Thomas, Jéssica Wildgrube Bertól, W. Jim Zheng +3 more

GPTON: Generative Pre-trained Transformers enhanced with Ontology Narration for accurate annotation of biological data

PubMed(2024)10.48550/arxiv.2410.10899

N/A

0DataRank · unranked

1 citations

Wenbo Chen, Jinbo Li, Hanwen Xing, Hua Xu, Li Zhao +2 more

Extracting Drug-Protein Relation from Literature Using Ensembles of Biomedical Transformers

Studies in health technology and informatics(2024)10.3233/shti231043

N/A

0DataRank · unranked

0 citations

Li Zhao, Wei Qiang, Jianfu Li, Liang‐Chin Huang, Yan Hu +4 more

Deletion of adipocyte Sine Oculis Homeobox Homolog 1 prevents lipolysis and attenuates skin fibrosis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.22.595271

N/A

0DataRank · unranked

0 citations

Tingting Mills, Scott D. Collum, Minghua Wu, Lucy Revercomb, Rene Girard +12 more

Presence of complete murine viral genome sequences in patient-derived xenografts

Nature Communications(2021)10.1038/s41467-021-22200-5

N/A

0DataRank · unranked

18 citations

Xuejun Fan, Jay‐Jiguang Zhu, Tong‐Ming Fu, Jiaqian Wu, Hua Xu +4 more

HSC-independent definitive hematopoietic cells persist into adult life

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.02.468909

N/A

0DataRank · unranked

2 citations

Haichao Wei, Takashi Yamanashi, David Shih, Nathália Azevedo Portilho, Samuel Cornelius +8 more

Transcriptomic and Epigenetic Profiling of Fibroblasts in Idiopathic Pulmonary Fibrosis

American Journal of Respiratory Cell and Molecular Biology(2021)10.1165/rcmb.2020-0437oc

N/A

0DataRank · unranked

35 citations

Lisha Zhu, Tinne C. J. Mertens, Scott Collum, Weizhen Bi, Feng Xiong +9 more

Segmenting thoracic cavities with neoplastic lesions

PubMed(2021)10.1145/3459930.3469564

N/A

0DataRank · unranked

0 citations

Rongbin Li, Kendall Kiser, Luca Giancardo, W. Jim Zheng, Li Zhao

Reshaping the tumor microenvironment with oncolytic viruses, positive regulation of the immune synapse, and blockade of the immunosuppressive oncometabolic circuitry

Journal for ImmunoTherapy of Cancer(2022)10.1136/jitc-2022-004935

N/A

0DataRank · unranked

56 citations

Dong Ho Shin, Sagar Sohoni, Sanjay K. Singh, Yisel Rivera-Molina, Hong Jiang +15 more

W. Jim Zheng

Indexed papers

Top data-sharing exemplar

Papers