Xibing He

Also affiliated with Genomics (United Kingdom)

Computer ScienceBiochemistry, Genetics and Molecular BiologyPhysics and AstronomyMaterials ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “Recent progress in general force fields of small molecules”.

Recent progress in general force fields of small molecules

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.11.011

N/A

0.606DataRank · unranked

56 citations

Brandon Walker, Viet Hoang Man, Pengyu Ren, Junmei Wang, Xibing He

Development and test of highly accurate endpoint free energy methods. 2: Prediction of logarithm of n‐octanol–water partition coefficient (logP) for druglike molecules using MM‐PBSA method

Journal of Computational Chemistry(2023)10.1002/jcc.27086

N/A

0.515DataRank · unranked

30 citations

Tingjun Hou, Xibing He, Viet Hoang Man, Junmei Wang, Yuchen Sun

Development and test of highly accurate endpoint free energy methods. 1: Evaluation of ABCG2 charge model on solvation free energy prediction and optimization of atom radii suitable for more accurate solvation free energy prediction by the PBSA method

Journal of Computational Chemistry(2023)10.1002/jcc.27089

N/A

0.464DataRank · unranked

21 citations

Xibing He, Tingjun Hou, Lianjin Cai, Viet Hoag Man, Junmei Wang +1 more

Investigation of the Structure of Full-Length Tau Proteins with Coarse-Grained and All-Atom Molecular Dynamics Simulations

ACS Chemical Neuroscience(2022)10.1021/acschemneuro.2c00381

N/A

0.416DataRank · unranked

15 citations

Viet Hoang Man, Jie Gao, Junmei Wang, Xibing He

Joint Computational/Cell-Based Approach for Screening Inhibitors of Tau Oligomerization: A Proof-of-Concept Study

Journal of Alzheimer s Disease(2022)10.3233/jad-220450

N/A

0.241DataRank · unranked

4 citations

Da Lin, Xibing He, Jie Gao, Junmei Wang, Viet Hoang Man

Development and test of highly accurate endpoint free energy methods. 3: partition coefficient prediction using a Poisson–Boltzmann method combined with a solvent accessible surface area model for SAMPL challenges

Physical Chemistry Chemical Physics(2023)10.1039/d3cp04174c

N/A

0.241DataRank · unranked

4 citations

Xibing He, Fengyang Han, Luxuan Wang, Junmei Wang, Taoyu Niu

Effects of All-Atom and Coarse-Grained Molecular Mechanics Force Fields on Amyloid Peptide Assembly: The Case of a Tau K18 Monomer

Journal of Chemical Information and Modeling(2024)10.1021/acs.jcim.4c01448

N/A

0.198DataRank · unranked

2 citations

Viet Hoang Man, Jie Gao, Junmei Wang, Xibing He

Binding Profile Assessment of N501Y: a More Infectious Mutation on the Receptor Binding Domain of SARS-CoV-2 Spike Protein

ChemRxiv(2021)10.26434/chemrxiv.13710961

N/A

0.104DataRank · unranked

1 citations

Xibing He, Viet Hoang Man, Jingchen Zhai, Beihong Ji, Junmei Wang +1 more

Machine learning on ligand-residue interaction profiles to significantly improve binding affinity prediction

Briefings in Bioinformatics(2021)10.1093/bib/bbab054

N/A

0DataRank · unranked

35 citations

Xibing He, Jingchen Zhai, Yuzhao Zhang, Viet Hoang Man, Junmei Wang +1 more

In Silico Screening of Natural Flavonoids against 3-Chymotrypsin-like Protease of SARS-CoV-2 Using Machine Learning and Molecular Modeling

Molecules(2023)10.3390/molecules28248034

N/A

0DataRank · unranked

6 citations

Fengyang Han, Beihong Ji, Xibing He, Luxuan Wang, Taoyu Niu +3 more

Unpolarized laser method for infrared spectrum calculation of amide I C O bonds in proteins using molecular dynamics simulation

Computers in Biology and Medicine(2023)10.1016/j.compbiomed.2023.106902

N/A

0DataRank · unranked

5 citations

Xibing He, Phuong H. Nguyen, Celeste Sagui, Christopher Roland, Xiang‐Qun Xie +2 more

Predicting anti-SARS-CoV-2 activities of chemical compounds using machine learning models

Artificial Intelligence Chemistry(2023)10.1016/j.aichem.2023.100029

N/A

0DataRank · unranked

2 citations

Yuhui Wu, Elena N. Thomas, Jocelyn N. Edwards, Xibing He, Junmei Wang +1 more

Toward Predicting Solubility of Arbitrary Solutes in Arbitrary Solvents. 1: Prediction of Density and Refractive Index Using Machine Learning Algorithms with correlation-group parallel feature analysis

ChemRxiv(2023)10.26434/chemrxiv-2023-5dgm9

N/A

0DataRank · unranked

1 citations

Jingchen Zhai, Xiguang Qi, Xibing He, Junmei Wang, Brian Hu

Geometry Optimization Algorithms in Conjunction with the Machine Learning Potential ANI-2x Facilitate the Structure-Based Virtual Screening and Binding Mode Prediction

Biomolecules(2024)10.3390/biom14060648

N/A

0DataRank · unranked

5 citations

Xibing He, Beihong Ji, Fengyang Han, Taoyu Niu, Lianjin Cai +4 more

A Full-Spectrum Generative Lead Discovery (FSGLD) Pipeline via DRUG-GAN: A Multiscale Method for Drug-like/Target-specific Compound Library Generation

Research Square(2025)10.21203/rs.3.rs-6516504/v1

N/A

0DataRank · unranked

0 citations

Beihong Ji, Matthew Brock, Yuhui Wu, Yuemin Bian, Xibing He +1 more

In silico binding profile characterization of SARS-CoV-2 spike protein and its mutants bound to human ACE2 receptor

Briefings in Bioinformatics(2021)10.1093/bib/bbab188

N/A

0DataRank · unranked

26 citations

Xibing He, Jingchen Zhai, Beihong Ji, Viet Hoang Man, Junmei Wang +1 more

Aberrant S293 Phosphorylation Drives Oligomerization of Tau Repeat R2: Insights from Molecular Dynamics Simulations

ACS Chemical Neuroscience(2025)10.1021/acschemneuro.5c00734

N/A

0DataRank · unranked

0 citations

Xibing He, Phuong H. Nguyen, Jie Gao, Junmei Wang, Viet Hoang Man

Incorporating structural similarity into a scoring function to enhance the prediction of binding affinities

Journal of Cheminformatics(2021)10.1186/s13321-021-00493-4

N/A

0DataRank · unranked

6 citations

Xibing He, Yuzhao Zhang, Jingchen Zhai, Viet Hoang Man, Shuhan Liu +2 more

Binding Profile Assessment of N501Y: a More Infectious Mutation on the Receptor Binding Domain of SARS-CoV-2 Spike Protein

ChemRxiv(2021)10.26434/chemrxiv.13710961.v1

N/A

0DataRank · unranked

1 citations

Xibing He, Viet Hoang Man, Jingchen Zhai, Beihong Ji, Junmei Wang +1 more

Binding Profile Assessment of N501Y: a More Infectious Mutation on the Receptor Binding Domain of SARS-CoV-2 Spike Protein

ChemRxiv(2021)10.26434/chemrxiv.13710961.v2

N/A

0DataRank · unranked

1 citations

Xibing He, Viet Hoang Man, Jingchen Zhai, Beihong Ji, Junmei Wang +1 more

Stable Cavitation Interferes with Aβ16–22 Oligomerization

Journal of Chemical Information and Modeling(2022)10.1021/acs.jcim.2c00764

N/A

0DataRank · unranked

7 citations

Xibing He, Junmei Wang, Viet Hoang Man

Development of Machine Learning Models to Predict a Chemical’s Anti-SARS-CoV-2 Activities

ChemRxiv(2022)10.26434/chemrxiv-2022-bckn8

N/A

0DataRank · unranked

0 citations

Yuhui Wu, Elena N. Thomas, Jocelyn N. Edwards, Xibing He, Junmei Wang +1 more