F. Marty Ytreberg

Also affiliated with Campbell Collaboration

Biochemistry, Genetics and Molecular BiologyMaterials ScienceEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “Paired Simulations and Experimental Investigations into the Calcium-Dependent Conformation of Albumin”.

Paired Simulations and Experimental Investigations into the Calcium-Dependent Conformation of Albumin

Journal of Chemical Information and Modeling(2022)10.1021/acs.jcim.1c01104

N/A

0.434DataRank · unranked

17 citations

Stephanie L. Haag, Jagdish Suresh Patel, F. Marty Ytreberg, Matthew T. Bernards, Dharmeshkumar Patel

Defining the HIV Capsid Binding Site of Nucleoporin 153

mSphere(2022)10.1128/msphere.00310-22

N/A

0.410DataRank · unranked

7 citations

Jagdish Suresh Patel, Jordan Yang, Angela Crabtree, Brenda M. Rubenstein, Peik K. Lund-Andersen +3 more

EfgA is a conserved formaldehyde sensor that halts bacterial translation in response to elevated formaldehyde

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.16.343392

N/A

0.292DataRank · unranked

6 citations

Dipti D. Nayak, Tomislav Ticak, M.G. Davlieva, Jessica A. Lee, Leah B. Lambert +8 more

Searching for a mechanistic description of pairwise epistasis in protein systems

(2021)10.22541/au.162290894.41749480/v1

N/A

0.104DataRank · unranked

1 citations

Craig R. Miller, F. Marty Ytreberg, Jonathan E. Barnes

Exploring the ability of the MD+FoldX method to predict SARS-CoV-2 antibody escape mutations using large-scale data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.22.595230

N/A

0.104DataRank · unranked

1 citations

Jonathan E. Barnes, Jagdish Suresh Patel, F. Marty Ytreberg, L. América

The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6

Scientific Reports(2022)10.1038/s41598-022-23482-5

N/A

0DataRank · unranked

14 citations

Peik K. Lund-Andersen, Jagdish Suresh Patel, F. Marty Ytreberg, Jonathan E. Barnes

Searching for a mechanistic description of pairwise epistasis in protein systems

Proteins Structure Function and Bioinformatics(2022)10.1002/prot.26328

N/A

0DataRank · unranked

5 citations

Craig R. Miller, F. Marty Ytreberg, Jonathan E. Barnes

Defining the HIV Capsid Binding Site of Nucleoporin 153

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.06.490988

N/A

0DataRank · unranked

0 citations

Jagdish Suresh Patel, Jordan Yang, Angela Crabtree, Brenda M. Rubenstein, Peik K. Lund-Andersen +3 more

The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6

Research Square(2022)10.21203/rs.3.rs-1836170/v1

N/A

0DataRank · unranked

0 citations

Peik K. Lund, Jagdish Suresh Patel, F. Marty Ytreberg, Jonathan E. Barnes

Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability

BMC Bioinformatics(2023)10.1186/s12859-023-05537-0

N/A

0DataRank · unranked

29 citations

Jagdish Suresh Patel, F. Marty Ytreberg, Craig R. Miller, Yesol Sapozhnikov

Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae

PLoS Pathogens(2023)10.1371/journal.ppat.1011418

N/A

0DataRank · unranked

13 citations

Angela Crabtree, Jack W. Creagh, Rodolfo Bizarria, Shunji Li, Ignacio de la Higuera +7 more

Exploring the ability of the MD+FoldX method to predict SARS-CoV-2 antibody escape mutations using large-scale data

Scientific Reports(2024)10.1038/s41598-024-72491-z

N/A

0DataRank · unranked

9 citations

Jonathan E. Barnes, Jagdish Suresh Patel, F. Marty Ytreberg, L. América

The Prevalence of Killer Yeasts in the Gardens of Fungus-Growing Ants and the Discovery of a Novel Killer Toxin named Ksino

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.14.618321

N/A

0DataRank · unranked

0 citations

Jack W. Creagh, Renato Santos, Lily LGivens, Sarah A. Coss, Tanner J. Badigian +8 more

The Saccharomyces killer toxin K62 is a protein of the aerolysin family

mBio(2025)10.1128/mbio.01425-25

N/A

0DataRank · unranked

1 citations

Michael Rolfsmeier, Kasen J. Evans, Rodolfo Bizarria, David C. Reetz, Tanner J. Badigian +11 more

Assessment of software methods for estimating protein-protein relative binding affinities

PLoS ONE(2020)10.1371/journal.pone.0240573

N/A

0DataRank · unranked

20 citations

Kyle Martin, Jonathan E. Barnes, Jagdish Suresh Patel, F. Marty Ytreberg, Tawny R. Gonzalez

The identification of a novel interaction site for the human immunodeficiency virus capsid on nucleoporin 153

Journal of General Virology(2025)10.1099/jgv.0.002104

N/A

0DataRank · unranked

0 citations

Peik K. Lund-Andersen, Szu‐Huan Wang, F. Marty Ytreberg, Mandar T. Naik, Jagdish Suresh Patel +2 more

Predicting the viability of beta-lactamase: How folding and binding free energies correlate with beta-lactamase fitness

PLoS ONE(2020)10.1371/journal.pone.0233509

N/A

0DataRank · unranked

31 citations

Nandita Naik, Jagdish Suresh Patel, C. Scott Wylie, Wenze Gu, Jessie Huang +5 more

EfgA is a conserved formaldehyde sensor that leads to bacterial growth arrest in response to elevated formaldehyde

PLoS Biology(2021)10.1371/journal.pbio.3001208

N/A

0DataRank · unranked

35 citations

Dipti D. Nayak, Tomislav Ticak, M.G. Davlieva, Jessica A. Lee, Chandler N. Hellenbrand +9 more

Searching for a mechanistic description of pairwise epistasis in protein systems

(2021)10.22541/au.162290894.41749480/v2

N/A

0DataRank · unranked

0 citations

Craig R. Miller, F. Marty Ytreberg, Jonathan E. Barnes

Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein

Journal of Virology(2022)10.1128/jvi.00353-22

N/A

0DataRank · unranked

17 citations

McKenna A. Hull, F. Marty Ytreberg, Jagdish Suresh Patel, Tanya A. Miura, Sierra S. Beach