🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Bryce E. Nickels

Rutgers, The State University of New Jersey

ORCID: 0000-0001-7449-8831

Also affiliated with Environmental and Occupational Health Sciences Institute

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing”.

XACT-Seq Comprehensively Defines the Promoter-Position and Promoter-Sequence Determinants for Initial-Transcription Pausing

Molecular Cell(2020)10.1016/j.molcel.2020.07.006
N/A
0.483DataRank · unranked
24 citations

Chirangini Pukhrambam, Irina O. Vvedenskaya, Yuanchao Zhang, Deanne Taylor, Premal Shah +3 more

XACT-seq: A photocrosslinking-based technique for detection of the RNA polymerase active-center position relative to DNA in Escherichia coli

STAR Protocols(2021)10.1016/j.xpro.2021.100858
N/A
0.104DataRank · unranked
1 citations

Irina O. Vvedenskaya, Bryce E. Nickels, Chirangini Pukhrambam

Quantitative analysis of transcription start site selection in Saccharomyces cerevisiae reveals control by DNA sequence, RNA Polymerase II activity, and NTP levels

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.09.467992
N/A
0.104DataRank · unranked
1 citations

Irina O. Vvedenskaya, Sing‐Hoi Sze, Bryce E. Nickels, Craig D. Kaplan, Yunye Zhu

A Spatiotemporal Molecular Switch Governs Plant Asymmetric Cell Division

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.05.284380
N/A
0DataRank · unranked
3 citations

Chan Ho Park, Zhiyong Wang, Bryce E. Nickels, Juan Dong, Xiaoyu Guo

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2106388118
N/A
0DataRank · unranked
13 citations

Lingting Li, Yuanchao Zhang, Irina O. Vvedenskaya, Jared T. Winkelman, Alexander L. Cope +7 more

Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.06.438613
N/A
0DataRank · unranked
0 citations

Lingting Li, Yuanchao Zhang, Irina O. Vvedenskaya, Jared T. Winkelman, Alexander L. Cope +7 more

Structural and mechanistic basis of σ-dependent transcriptional pausing

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2201301119
N/A
0DataRank · unranked
15 citations

Vadim Molodtsov, Mahdi Kooshkbaghi, Ammar Tareen, Hoa Vu, Kyle S. Skalenko +7 more

Structural and mechanistic basis of σ-dependent transcriptional pausing

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.24.477500
N/A
0DataRank · unranked
4 citations

Vadim Molodtsov, Mahdi Kooshbaghi, Ammar Tareen, Hoa Vu, Kyle S. Skalenko +7 more

Structural basis of transcription antitermination by Qλ: NusA induces refolding of Qλ to form nozzle for RNA polymerase exit channel

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.25.485794
N/A
0DataRank · unranked
2 citations

Jeremy G. Bird, Jason T. Kaelber, Bryce E. Nickels, Richard H. Ebright, Yin Zhou

Structural and mechanistic basis of reiterative transcription initiation

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2115746119
N/A
0DataRank · unranked
0 citations

Libing Yu, Chirangini Pukhrambam, Jared T. Winkelman, Emre Firlar, Jason T. Kaelber +4 more

Quantitative analysis of transcription start site selection reveals control by DNA sequence, RNA polymerase II activity and NTP levels

Nature Structural & Molecular Biology(2024)10.1038/s41594-023-01171-9
N/A
0DataRank · unranked
10 citations

Irina O. Vvedenskaya, Sing‐Hoi Sze, Bryce E. Nickels, Craig D. Kaplan, Yunye Zhu

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

Genome biology(2020)10.1186/s13059-020-02040-0
N/A
0DataRank · unranked
48 citations

Huiyan Jin, Irina O. Vvedenskaya, Jordi Abante Llenas, Tingting Zhao, Indranil Malik +13 more

RNA polymerase II-TFIIE-TFIIH interface functions in transcription start site selection in Saccharomyces cerevisiae

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.05.686797
N/A
0DataRank · unranked
0 citations

Yunye Zhu, Irina O. Vvendenskaya, Payal Arora, Staci E. Hammer, Brittany R. McVicar +4 more

CapZyme-Seq: A 5′-RNA-Seq Method for Differential Detection and Quantitation of NAD-Capped and Uncapped 5′-Triphosphate RNA

STAR Protocols(2020)10.1016/j.xpro.2019.100002
N/A
0DataRank · unranked
8 citations

Bryce E. Nickels, Irina O. Vvedenskaya

Functional Determinants of a Small Protein Controlling a Broadly Conserved Bacterial Sensor Kinase

Journal of Bacteriology(2020)10.1128/jb.00305-20
N/A
0DataRank · unranked
46 citations

Ted Goh, Jeffrey N. Carey, Gabriele Malengo, Sangeevan Vellappan, Bryce E. Nickels +4 more