John S. Schneekloth

Frederick National Laboratory for Cancer Research

Also affiliated with National Cancer Institute, Center for Cancer Research

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 42 papers. Top paper: “Targeting the RNA Polymerase I Transcription for Cancer Therapy Comes of Age”.

Targeting the RNA Polymerase I Transcription for Cancer Therapy Comes of Age

Cells(2020)10.3390/cells9020266

N/A

0.786DataRank · unranked

188 citations

John S. Schneekloth, Kostya I. Panov, Katherine M. Hannan, Ross D. Hannan, Rita Ferreira

Investigating the NRAS 5′ UTR as a target for small molecules

Cell chemical biology(2023)10.1016/j.chembiol.2023.05.004

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0.561DataRank · unranked

41 citations

Zachary R. Torrey, David Calabrese, Michael T. Banco, Kamyar Yazdani, Liang Xiao +8 more

Small molecule microarray identifies inhibitors of tyrosyl-DNA phosphodiesterase 1 that simultaneously access the catalytic pocket and two substrate binding sites

Chemical Science(2021)10.1039/d0sc05411a

N/A

0.529DataRank · unranked

33 citations

Evgeny Kiselev, G.T. Lountos, Wenjie Wang, Joseph E. Tropea, D. Needle +6 more

Mechanistic analysis of Riboswitch Ligand interactions provides insights into pharmacological control over gene expression

Nature Communications(2024)10.1038/s41467-024-52235-3

N/A

0.439DataRank · unranked

9 citations

Desta Doro Bume, Colleen M. Connelly, Robert E. Boer, Peri R. Prestwood, Zhen Wang +8 more

Genetic regulation of TERT splicing affects cancer risk by altering cellular longevity and replicative potential

Nature Communications(2025)10.1038/s41467-025-56947-y

N/A

0.416DataRank · unranked

15 citations

Michelle Ho, Maxwell H. Hogshead, Brenen W. Papenberg, Chia‐Han Lee, Kaitlin Forsythe +18 more

Three‐Color Imaging Enables Simultaneous Screening of Multiple RNA Targets on Small Molecule Microarrays

Current Protocols in Chemical Biology(2020)10.1002/cpch.87

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0DataRank · unranked

10 citations

Mo Yang, John S. Schneekloth, Deondre Jordan

A Small Molecule Stabilizer of the MYC G4-Quadruplex Induces Endoplasmic Reticulum Stress, Senescence and Pyroptosis in Multiple Myeloma

Cancers(2020)10.3390/cancers12102952

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0DataRank · unranked

39 citations

Zaw Phyo, Anaisa Quintanilla Arteaga, Sayeh Gorjifard, David Calabrese, Daniel Connors +7 more

Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design

Cell chemical biology(2020)10.1016/j.chembiol.2020.07.021

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0DataRank · unranked

33 citations

Patricio Pichling, Logan Tenney, Colleen M. Connelly, Michelle H. Moon, A.R. Ferré-D′Amaré +3 more

Custom G4 Microarrays Reveal Selective G-Quadruplex Recognition of Small Molecule BMVC: A Large-Scale Assessment of Ligand Binding Selectivity

Molecules(2020)10.3390/molecules25153465

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0DataRank · unranked

23 citations

Desiree Tillo, Sreejana Ray, Ta‐Chau Chang, John S. Schneekloth, Charles Vinson +2 more

A chemical probe based on the PreQ1 metabolite enables transcriptome-wide mapping of binding sites

Nature Communications(2021)10.1038/s41467-021-25973-x

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0DataRank · unranked

53 citations

Curran A. Rhodes, Desta Doro Bume, Colleen M. Connelly, Christopher C. Lai, James A. Kelley +6 more

Targeting a noncanonical, hairpin-containing G-quadruplex structure from the MYCN gene

Nucleic Acids Research(2021)10.1093/nar/gkab594

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0DataRank · unranked

29 citations

Sakereh Carter, Shaifaly Parmar, Desta Doro Bume, David Calabrese, Xiao Liang +6 more

Structural insights of the conserved “priming loop” of hepatitis B virus pre-genomic RNA

Journal of Biomolecular Structure and Dynamics(2021)10.1080/07391102.2021.1934544

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0DataRank · unranked

26 citations

Wojciech K. Kasprzak, Andrew P. Longhini, Lukasz T. Olenginski, Fardokht A. Abulwerdi, Stefano Ginocchio +10 more

Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands

Nucleic Acids Research(2021)10.1093/nar/gkab1170

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0DataRank · unranked

18 citations

Abeer A. Ageeli, Wojciech K. Kasprzak, Mi Li, Jennifer T. Miller, Joanna Sztuba-Solińska +10 more

Dysregulation of Hepatitis B Virus Nucleocapsid Assembly with RNA-directed Small Ligands

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.10.455820

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0DataRank · unranked

2 citations

Fardokht A. Abulwerdi, Farzad Fatehi, Iain W. Manfield, Stuart Le Grice, John S. Schneekloth +3 more

Interrogating RNA-small molecule interactions with structure probing and AI augmented-molecular simulations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.28.462207

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0DataRank · unranked

1 citations

Shaifaly Parmar, John S. Schneekloth, Pratyush Tiwary, Yihang Wang

Machine Learning Informs RNA‐Binding Chemical Space**

Angewandte Chemie International Edition(2022)10.1002/anie.202211358

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0DataRank · unranked

72 citations

Deondre Jordan, Mo Yang, Christopher R. Fullenkamp, David Calabrese, Robert E. Boer +5 more

Dysregulation of Hepatitis B Virus Nucleocapsid Assembly in vitro by RNA-binding Small Ligands

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167557

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0DataRank · unranked

9 citations

Fardokht A. Abulwerdi, Farzad Fatehi, Iain W. Manfield, Stuart Le Grice, John S. Schneekloth +3 more

Investigating the NRAS 5’ UTR as a Target for Small Molecules

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.05.475055

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0DataRank · unranked

5 citations

Zachary R. Torrey, David Calabrese, Michael T. Banco, Kamyar Yazdani, Liang Xiao +4 more

Dataset of high-throughput ligand screening against the RNA Packaging Signals regulating Hepatitis B Virus nucleocapsid formation

Data in Brief(2022)10.1016/j.dib.2022.108206

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0DataRank · unranked

3 citations

Farzad Fatehi, Iain W. Manfield, Stuart F.J. Le Grice, John S. Schneekloth, Reidun Twarock +3 more

KDM3B inhibitors disrupt PAX3-FOXO1 oncogenic activity in fusion positive rhabdomyosarcoma.

Research Square(2022)10.21203/rs.3.rs-2298627/v1

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0DataRank · unranked

0 citations

Berkley E. Gryder, Ranuka Sinniah, Megan L. Peach, Jack F. Shern, Abdalla Abdelmaksoud +26 more

Proximity-Induced Nucleic Acid Degrader (PINAD) Approach to Targeted RNA Degradation Using Small Molecules

ACS Central Science(2023)10.1021/acscentsci.3c00015

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0DataRank · unranked

68 citations

Maria Rebelo, Eliza Yankova, Muxin Gu, Cong Tang, Ana R. Coelho +13 more

Decoding complexity in biomolecular recognition of DNA i-motifs with microarrays

Nucleic Acids Research(2023)10.1093/nar/gkad981

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0DataRank · unranked

24 citations

Srinath Seshadri, Desiree Tillo, Mo Yang, Christopher D. Sibley, Charles Vinson +2 more

Crystal Structure of an i‐Motif from the HRAS Oncogene Promoter

Angewandte Chemie International Edition(2023)10.1002/anie.202301666

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0DataRank · unranked

20 citations

Deondre Jordan, Linda Yingqi Lin, Sawyer McCarthy, John S. Schneekloth, Liliya A. Yatsunyk +1 more

Inferring phase transitions and critical exponents from limited observations with Thermodynamic Maps

arXiv (Cornell University)(2023)10.48550/arxiv.2308.14885

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0DataRank · unranked

9 citations

Kinjal Mondal, John S. Schneekloth, Pratyush Tiwary, Lukas Herron

DECODING COMPLEXITY IN BIOMOLECULAR RECOGNITION OF DNA I-MOTIFS

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.19.537548

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0DataRank · unranked

6 citations

Srinath Seshadri, Desiree Tillo, Charles Vinson, John S. Schneekloth, Kamyar Yazdani

Competitive Microarray Screening Reveals Functional Ligands for the DHX15 RNA G-quadruplex

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550542

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0DataRank · unranked

0 citations

Mo Yang, Grace V. Lewis, Sumirtha Balaratnam, Kamyar Yazdani, John S. Schneekloth +1 more

KDM3B inhibitors disrupt the oncogenic activity of PAX3-FOXO1 in fusion-positive rhabdomyosarcoma

Nature Communications(2024)10.1038/s41467-024-45902-y

N/A

0DataRank · unranked

18 citations

Berkley E. Gryder, Ranuka Sinniah, Megan L. Peach, Jack F. Shern, Abdalla Abdelmaksoud +27 more

Targeting RNA-protein interactions with small molecules: promise and therapeutic potential

Medicinal Chemistry Research(2024)10.1007/s00044-024-03342-9

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0DataRank · unranked

11 citations

Sumirtha Balaratnam, Kamyar Yazdani, Srinath Seshadri, John S. Schneekloth, Curran A. Rhodes

Insights into biofilm architecture and maturation enable improved clinical strategies for exopolysaccharide-targeting therapeutics

Cell chemical biology(2024)10.1016/j.chembiol.2024.11.005

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0DataRank · unranked

10 citations

Zibin Tan, Mi Li, Mo Yang, Alexander Wlodawer, Xuefei Huang +3 more

Use of a small molecule microarray screen to identify inhibitors of the catalytic RNA subunit of Methanobrevibacter smithii RNase P

Nucleic Acids Research(2024)10.1093/nar/gkae1190

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0DataRank · unranked

5 citations

Christopher D. Sibley, Kara Dunne-Dombrink, Mo Yang, Walter J. Zahurancik, Sumirtha Balaratnam +4 more

Bioorthogonal Cyclopropenones for Investigating RNA Structure

ACS Chemical Biology(2024)10.1021/acschembio.4c00633

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0DataRank · unranked

1 citations

Christopher D. Sibley, Brandon Latifi, Sumirtha Balaratnam, Robert S. Dorn, Andrej Lupták +3 more

Structure-Informed Design of an Ultra Bright RNA-activated Fluorophore

Research Square(2024)10.21203/rs.3.rs-4750449/v1

N/A

0DataRank · unranked

1 citations

Mo Yang, Peri R. Prestwood, Luiz F. M. Passalacqua, Sumirtha Balaratnam, Christopher R. Fullenkamp +4 more

Bioorthogonal cyclopropenones for investigating RNA structure

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.22.619649

N/A

0DataRank · unranked

0 citations

Christopher D. Sibley, Brandon Latifi, Sumirtha Balaratnam, Robert S. Dorn, Andrej Lupták +3 more

Genetic regulation of TERT splicing contributes to reduced or elevated cancer risk by altering cellular longevity and replicative potential

medRxiv(2024)10.1101/2024.11.04.24316722

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0DataRank · unranked

0 citations

Michelle Ho, Maxwell Hogshead, Chia‐Han Lee, Brenen W. Papenberg, Kaitlin Forsythe +18 more

Structure-informed design of an ultrabright RNA-activated fluorophore

Nature Chemistry(2025)10.1038/s41557-025-01832-w

N/A

0DataRank · unranked

7 citations

Peri R. Prestwood, Luiz F. M. Passalacqua, Sumirtha Balaratnam, Christopher R. Fullenkamp, J. Winston Arney +4 more

Discovery of thiacyanine dyes as a new class of potent coronavirus inhibitors that suppress viral RNA synthesis

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110547

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0DataRank · unranked

0 citations

Valerie Altouma, Joshua A. Sommers, Adaira J Dumm, Debbie R. Kennedy, Hongjie Xia +14 more

Discovery of small molecule probes targeting the 5′ stem-loop in the yeast U4/U6 snRNA

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.10.681657

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0DataRank · unranked

0 citations

Shaifaly Parmar, Sumirtha Balaratnam, Desta Doro Bume, Peri R. Prestwood, Wojciech K. Kasprzak +2 more

Expanding the Crosslinking Mass Spectrometry Toolbox With Vinyl Sulfone Crosslinkers

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.101315

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0DataRank · unranked

0 citations

Haitao Wu, Katerina Atallah-Yunes, Kitaik Lee, Chris Sibley, Jesse A. Spivey +4 more

Targeting the Oncogenic Long Non-coding RNA SLNCR1 by Blocking Its Sequence-Specific Binding to the Androgen Receptor

Cell Reports(2020)10.1016/j.celrep.2019.12.011

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0DataRank · unranked

77 citations

Chase A. Weidmann, Thomas A. Hilimire, Elaine Yee, Breanne M. Hatfield, John S. Schneekloth +3 more

Custom DNA Microarrays Reveal Diverse Binding Preferences of Proteins and Small Molecules to Thousands of G-Quadruplexes

ACS Chemical Biology(2020)10.1021/acschembio.9b00934

N/A

0DataRank · unranked

54 citations

Desiree Tillo, Robert E. Boer, Nima Assad, Mira Barshai, Guanhui Wu +5 more

Chemical Modulation of Pre-mRNA Splicing in Mammalian Systems

ACS Chemical Biology(2020)10.1021/acschembio.0c00001

N/A

0DataRank · unranked

22 citations

Zachary R. Torrey, John S. Schneekloth, Robert E. Boer

Transcriptional regulation of MYC through G-quadruplex structures

Annual reports in medicinal chemistry(2020)10.1016/bs.armc.2020.05.002

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0DataRank · unranked

11 citations

John S. Schneekloth, Sumirtha Balaratnam