Malte D. Luecken

Also affiliated with Institute of Bioinformatics and Systems Biology, Helmholtz Institute Mainz, German Center for Lung Research

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

24.3Author DataRank

Indexed papers

18in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 18 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Benchmarking atlas-level data integration in single-cell genomics

Nature Methods(2021)10.1038/s41592-021-01336-8

Top 3%

6.5DataRank

Top 3%1462 citations

Maren Büttner, Kridsadakorn Chaichoompu, M. F. Mueller, Fabian Joachim Theis, Anna Danese +7 more

Papers

Driven by 48 papers — median percentile 28. Top paper: “Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics”.

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

Nature Medicine(2021)10.1038/s41591-020-01227-z

N/A

8.2DataRank · unranked

378 citations

Malte D. Luecken, Gökcen Eraslan, Lisa Sikkema, Avinash Waghray, Graham Heimberg +95 more

Benchmarking atlas-level data integration in single-cell genomics

Nature Methods(2021)10.1038/s41592-021-01336-8

Top 3%

6.5DataRank

Top 3%1462 citations

Maren Büttner, Kridsadakorn Chaichoompu, M. F. Mueller, Fabian Joachim Theis, Anna Danese +7 more

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8

Top 4%

5.4DataRank

Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Benchmarking atlas-level data integration in single-cell genomics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.111161

N/A

5.3DataRank · unranked

122 citations

Maren Büttner, Kridsadakorn Chaichoompu, Marta Interlandi, Michaela Müller, Daniel Strobl +6 more

An integrated cell atlas of the lung in health and disease

Nature Medicine(2023)10.1038/s41591-023-02327-2

Top 4%

5.0DataRank

Top 4%781 citations

Ciro Ramírez-Suástegui, Tessa E. Gillett, Luke Zappia, Elo Madissoon, Nikolay S. Markov +87 more

An integrated cell atlas of the human lung in health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.10.483747

Top 8%

2.8DataRank

Top 8%97 citations

Daniel Strobl, Luke Zappia, Nikolay S. Markov, Laure-Emmanuelle Zaragosi, Marie-Jeanne Arguel +77 more

Multimodal single cell data integration challenge: results and lessons learned

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.11.487796

N/A

2.5DataRank · unranked

79 citations

Malte D. Luecken, Daniel B. Burkhardt, Robrecht Cannoodt, Pia Rautenstrauch, Anna Laddach +13 more

Optimizing Xenium In Situ data utility by quality assessment and best-practice analysis workflows

Nature Methods(2025)10.1038/s41592-025-02617-2

Top 13%

1.7DataRank

Top 13%97 citations

Louis Benedikt Kuemmerle, Christoffer Mattsson-Langseth, Sebastian Tismeyer, Christophe Avenel, Kuan-lin Huang +16 more

Primary cilia and SHH signaling impairments in human and mouse models of Parkinson’s disease

Nature Communications(2022)10.1038/s41467-022-32229-9

N/A

1.7DataRank · unranked

69 citations

Malte D. Luecken, Dietrich Trümbach, Sina Hembach, Kristina M. Niedermeier, Nicole Wenck +19 more

Synthetic enforcement of STING signaling in cancer cells appropriates the immune microenvironment for checkpoint inhibitor therapy

Science Advances(2023)10.1126/sciadv.add8564

N/A

1.6DataRank · unranked

48 citations

Sophie E. Isay, Zsuzsanna Kurgyis, Patricia Loll, Mohammed H. Mosa, Malte D. Luecken +9 more

Ly6D+Siglec-H+ precursors contribute to conventional dendritic cells via a Zbtb46+Ly6D+ intermediary stage

Nature Communications(2022)10.1038/s41467-022-31054-4

N/A

1.1DataRank · unranked

30 citations

Andrea Musumeci, Christopher Sie, Ezgi Dursun, Elena Winheim, Johannes Bagnoli +11 more

Alveolar macrophages in early stage COPD show functional deviations with properties of impaired immune activation

Frontiers in Immunology(2022)10.3389/fimmu.2022.917232

N/A

1.1DataRank · unranked

50 citations

Wataru Fujii, Theodore S. Kapellos, Erika Dudkin, Nico Reusch, Ari Horne +44 more

A Roadmap for a Consensus Human Skin Cell Atlas and Single-Cell Data Standardization

Journal of Investigative Dermatology(2023)10.1016/j.jid.2023.03.1679

Top 19%

1.1DataRank

Top 19%30 citations

Hao Yuan, Karl Annusver, Raúl Ramos, Yingzi Liu, Julie Wiedemann +14 more

Considerations for building and using integrated single-cell atlases

Nature Methods(2024)10.1038/s41592-024-02532-y

N/A

1.0DataRank · unranked

52 citations

Avi Srivastava, Vladimir A. Shitov, Graham Heimberg, Maiia Schulman, Amanda J. Oliver +10 more

Best practices for single-cell analysis across modalities

Nature Reviews Genetics(2023)10.1038/s41576-023-00586-w

N/A

1.0DataRank · unranked

1013 citations

Anna Christina Schaar, Christopher Lance, Anastasia Litinetskaya, Felix Drost, Luke Zappia +34 more

Mapping single-cell data to reference atlases by transfer learning

Nature Biotechnology(2021)10.1038/s41587-021-01001-7

N/A

0.962DataRank · unranked

610 citations

Mohsen Naghipourfar, Malte D. Luecken, Matin Khajavi, Maren Büttner, Marco Wagenstetter +9 more

SARS-CoV-2 infection triggers profibrotic macrophage responses and lung fibrosis

Cell(2021)10.1016/j.cell.2021.11.033

N/A

0.943DataRank · unranked

538 citations

Oliver Dietrich, Tommaso Mari, Saskia von Stillfried, Ignacio Ibarra Del Río, Mirja Mittermaier +61 more

Defining and benchmarking open problems in single-cell analysis

Nature Biotechnology(2025)10.1038/s41587-025-02694-w

N/A

0.937DataRank · unranked

29 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Nikolay S. Markov, Luke Zappia +48 more

Probe set selection for targeted spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.16.504115

N/A

0.890DataRank · unranked

24 citations

Malte D. Luecken, Alexandra B. Firsova, Lisa Barros de Andrade e Sousa, Lena Straßer, Lukas Heumos +14 more

Early life adversity shapes social subordination and cell type–specific transcriptomic patterning in the ventral hippocampus

Science Advances(2023)10.1126/sciadv.adj3793

N/A

0.863DataRank · unranked

38 citations

Juan Pablo López, Joeri Bordes, Carlo De Donno, Julien Dine, Elena Brivio +14 more

Heterogeneity-driven phenotypic plasticity and treatment response in branched-organoid models of pancreatic ductal adenocarcinoma

Nature Biomedical Engineering(2024)10.1038/s41551-024-01273-9

N/A

0.807DataRank · unranked

35 citations

Mulham Najajreh, David P. Cook, Carlo H. Maurer, Stefanie Bärthel, Hendrik A. Messal +44 more

The discovAIR project: a roadmap towards the Human Lung Cell Atlas

European Respiratory Journal(2022)10.1183/13993003.02057-2021

Top 25%

0.797DataRank

Top 25%26 citations

Laure-Emmanuelle Zaragosi, Elo Madissoon, Avi Srivastava, Alexandra B. Firsova, Elena De Domenico +36 more

A reversible state of hypometabolism in a human cellular model of sporadic Parkinson’s disease

Nature Communications(2023)10.1038/s41467-023-42862-7

N/A

0.662DataRank · unranked

22 citations

Constantin Stautner, Duc Tung Vu, Alexander Heinz, Martin Regensburger, Ozge Karayel +20 more

Ketamine exerts its sustained antidepressant effects via cell-type-specific regulation of Kcnq2

Neuron(2022)10.1016/j.neuron.2022.05.001

N/A

0.659DataRank · unranked

80 citations

Malte D. Luecken, Elena Brivio, Stoyo Karamihalev, Aron Kos, Carlo De Donno +29 more

Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multilineage cell circuit dynamics in human lung fibrogenesis

Science Translational Medicine(2023)10.1126/scitranslmed.adh0908

N/A

0.624DataRank · unranked

63 citations

Janine Gote-Schniering, Diana Porras-Gonzalez, Lin Yang, Laurens J. De Sadeleer, R. Christoph Jentzsch +27 more

Integrated multi-omics single cell atlas of the human retina

Research Square(2023)10.21203/rs.3.rs-3471275/v1

Top 32%

0.619DataRank

Top 32%19 citations

Jin Li, Jun Wang, Ignacio Ibarra, Xuesen Cheng, Malte D. Luecken +19 more

Defining and benchmarking open problems in single-cell analysis

Research Square(2024)10.21203/rs.3.rs-4181617/v1

N/A

0.603DataRank · unranked

17 citations

Scott Gigante, Daniel B. Burkhardt, Robrecht Cannoodt, Daniel Strobl, Nikolay S. Markov +45 more

Feature selection methods affect the performance of scRNA-seq data integration and querying

Nature Methods(2025)10.1038/s41592-025-02624-3

N/A

0.560DataRank · unranked

18 citations

Sabrina Richter, Ciro Ramírez-Suástegui, Raphael Kfuri-Rubens, Larsen Vornholz, Weixu Wang +5 more

Biases in machine-learning models of human single-cell data

Nature Cell Biology(2025)10.1038/s41556-025-01619-8

N/A

0.448DataRank · unranked

7 citations

Vladimir A. Shitov, Malte D. Luecken, Niki Kilbertus, Stefan Bauer, Marie Piraud +3 more

Uncertainty Quantification for Atlas-Level Cell Type Transfer

arXiv (Cornell University)(2022)10.48550/arxiv.2211.03793

N/A

0.417DataRank · unranked

5 citations

Leon Hetzel, Giovanni Palla, Avi Srivastava, Malte D. Luecken, Fabian Joachim Theis +1 more

Ex vivo tissue perturbations coupled to single-cell RNA-seq reveal multi-lineage cell circuit dynamics in human lung fibrogenesis

Mechanisms of lung injury and repair(2023)10.1183/13993003.congress-2023.oa1569

N/A

0.373DataRank · unranked

6 citations

Janine Gote-Schniering, Diana Porras-Gonzalez, Lin Yang, Laurens J. De Sadeleer, R. Christoph Jentzsch +25 more

Spatial single-cell atlas reveals regional variations in healthy and diseased human lung

Nature Communications(2025)10.1038/s41467-025-65704-0

N/A

0.345DataRank · unranked

9 citations

Sergio Marco Salas, Louis Benedikt Kuemmerle, Xesús M. Abalo, Alexandros Sountoulidis, Ludvig Larsson +24 more

Ex vivo tissue perturbations coupled to single cell RNA-seq reveal multi-lineage cell circuit dynamics in human lung fibrogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.16.524219

N/A

0.326DataRank · unranked

4 citations

Janine Gote-Schniering, Diana Porras-Gonzalez, Lin Yang, Laurens J. De Sadeleer, R. Christoph Jentzsch +24 more

RAAS blockade, kidney disease, and expression of ACE2 , the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.23.167098

N/A

0.312DataRank · unranked

7 citations

Katherine A. Vernon, Michal Slyper, Julia Waldman, Malte D. Luecken, Kirk Gosik +13 more

A benchmark for prediction of transcriptomic responses to chemical perturbations across cell types

Advances in Neural Information Processing Systems 37(2024)10.52202/079017-0650

N/A

0.171DataRank · unranked

2 citations

Andrew Benz, Daniel Burkhardt, Robrecht Cannoodt, Mauricio Cortes, Jason Fong +18 more

Beyond Visual Inspection: Principled Benchmarking of Single-Cell Trajectory Representations with scTRAM

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.23.661141

N/A

0.165DataRank · unranked

2 citations

Antony Rose, Muzlifah Haniffa, Malte D. Luecken, Fabian Joachim Theis, Kemal Inecik

An integrated cell atlas of the human lung in health and disease

Research Square(2022)10.21203/rs.3.rs-1438584/v1

Top 71%

0.127DataRank

Top 71%1 citations

Avi Srivastava, Daniel Strobl, Luke Zappia, Elo Madissoon, Nikolay S. Markov +80 more

A spatially resolved extracellular matrix proteome atlas of the distal human lung

Mechanisms of lung injury and repair(2023)10.1183/13993003.congress-2023.oa2626

Top 72%

0.111DataRank

Top 72%1 citations

Janine Gote-Schniering, Michaela Müller, Pascal Albanese, Andris Jankevics, R. Christoph Jentzsch +22 more

ArchMap: A web-based platform for reference-based analysis of single-cell datasets

Research Square(2024)10.21203/rs.3.rs-5110946/v1

N/A

0.104DataRank · unranked

1 citations

Mohammad Lotfollahi, Fabian Joachim Theis, Ronald Skorobogat, Xavier George, Simon Richter +4 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets

Figshare(2020)10.6084/m9.figshare.12420968.v7

Top 78%

0.104DataRank

Top 78%1 citations

Maren Büttner, Anna Danese, Marta Interlandi, Michaela Müller, Daniel Strobl +6 more

Source Data files for: Primary cilia and SHH signaling impairments in human and mouse models of Parkinson's disease

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6677636

Top 78%

0.104DataRank

Top 78%1 citations

Malte D. Luecken, Dietrich Trümbach, Sina Hembach, Kristina M. Niedermeier, Nicole Wenck +19 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets (Immune and pancreas)

Figshare(2020)10.6084/m9.figshare.12420968.v2

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Kridsadakorn Chaichoompu, Anna Danese, Marta Interlandi, Michaela Müller +6 more

Source Data files for: Primary cilia and SHH signaling impairments in human and mouse models of Parkinson's disease

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.6677637

Top 100%

0DataRank

Top 100%0 citations

Malte D. Luecken, Dietrich Trümbach, Sina Hembach, Kristina M. Niedermeier, Nicole Wenck +19 more

Molecular mechanisms underlying the onset of metabolic deficits in sporadic Parkinson’s disease

Neuroscience Applied(2024)10.1016/j.nsa.2024.104036

N/A

0DataRank · unranked

0 citations

Malte Luecken, Sebastian Schmidt, Malte D. Luecken, Fabian Joachim Theis, Daniela M. Vogt Weisenhorn +1 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets

Figshare(2020)10.6084/m9.figshare.12420968.v4

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Anna Danese, Marta Interlandi, Michaela Müller, Daniel Strobl +6 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets (Immune, lung, and pancreas)

Figshare(2020)10.6084/m9.figshare.12420968.v3

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Kridsadakorn Chaichoompu, Anna Danese, Marta Interlandi, Michaela Müller +6 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets (Immune and pancreas)

Figshare(2020)10.6084/m9.figshare.12420968.v1

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Kridsadakorn Chaichoompu, Anna Danese, Marta Interlandi, Michaela Müller +6 more

Benchmarking atlas-level data integration in single-cell genomics - integration task datasets

Figshare(2020)10.6084/m9.figshare.12420968.v5

Top 100%

0DataRank

Top 100%0 citations

Maren Büttner, Anna Danese, Marta Interlandi, Michaela Müller, Daniel Strobl +6 more

Malte D. Luecken

Indexed papers

Top data-sharing exemplar

Papers