Rhiju Das

Howard Hughes Medical Institute

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.3Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

De novo3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures

Nucleic Acids Research(2021)10.1093/nar/gkab119

Top 8%

2.8DataRank

Top 8%85 citations

Andrew M. Watkins, Jose Chacon, Rachael C. Kretsch, Wipapat Kladwang, Ivan N. Zheludev +5 more

Papers

Driven by 63 papers — median percentile 83. Top paper: “Programmable antivirals targeting critical conserved viral RNA secondary structures from influenza A virus and SARS-CoV-2”.

Programmable antivirals targeting critical conserved viral RNA secondary structures from influenza A virus and SARS-CoV-2

Nature Medicine(2022)10.1038/s41591-022-01908-x

N/A

2.9DataRank · unranked

56 citations

Menashe Elazar, Edward A. Pham, Siqi Tian, Lily Ben‐Avi, Claire Bernardin-Souibgui +27 more

De novo3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures

Nucleic Acids Research(2021)10.1093/nar/gkab119

Top 8%

2.8DataRank

Top 8%85 citations

Andrew M. Watkins, Jose Chacon, Rachael C. Kretsch, Wipapat Kladwang, Ivan N. Zheludev +5 more

Ribonanza: deep learning of RNA structure through dual crowdsourcing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.24.581671

Top 16%

1.3DataRank

Top 16%35 citations

Rui Huang, Jill Townley, Rachael C. Kretsch, Thomas G. Karagianes, David B.T. Cox +31 more

De novo 3D models of SARS-CoV-2 RNA elements and small-molecule-binding RNAs to aid drug discovery

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.14.041962

Top 19%

1.1DataRank

Top 19%21 citations

Andrew M. Watkins, Jose Chacon, Wipapat Kladwang, Ivan N. Zheludev, Jill Townley +4 more

Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics

Nature Communications(2022)10.1038/s41467-022-28776-w

N/A

0.896DataRank · unranked

391 citations

Gun Woo Byeon, Wipapat Kladwang, Hannah K. Wayment-Steele, Craig H. Kerr, Adele Xu +24 more

Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome

Nature Structural & Molecular Biology(2021)10.1038/s41594-021-00653-y

N/A

0.775DataRank · unranked

174 citations

Ivan N. Zheludev, Rachel J. Hagey, Raphael Haslecker, Yixuan J. Hou, Rachael C. Kretsch +14 more

Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules

UNC Libraries(2020)10.17615/8ga2-9t05

N/A

0.752DataRank · unranked

149 citations

Monica Berrondo, Andrew Leaver-Fay, James Thompson, S. I. Cooper, Daniel J. Mandell +27 more

Deep learning models for predicting RNA degradation via dual crowdsourcing

Nature Machine Intelligence(2022)10.1038/s42256-022-00571-8

N/A

0.606DataRank · unranked

56 citations

Wipapat Kladwang, Andrew M. Watkins, Do Soon Kim, Bojan Tunguz, Walter Reade +24 more

Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.29.437587

N/A

0.561DataRank · unranked

41 citations

Gun Woo Byeon, Wipapat Kladwang, Hannah K. Wayment-Steele, Craig H. Kerr, Adele Xu +16 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

Nature Communications(2021)10.1038/s41467-021-27222-7

N/A

0.500DataRank · unranked

27 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +45 more

Assessment of Nucleic Acid Structure Prediction in CASP16

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70072

N/A

0.470DataRank · unranked

22 citations

Alissa M. Hummer, Shujun He, Rongqing Yuan, Jing Zhang, Thomas G. Karagianes +4 more

Folding heterogeneity in the essential human telomerase RNA three-way junction

RNA(2020)10.1261/rna.077255.120

N/A

0.449DataRank · unranked

19 citations

Nicholas M. Forino, Jendrik Hentschel, Rhiju Das, Michael D. Stone, Christina Palka

RNA structure: a renaissance begins?

Nature Methods(2021)10.1038/s41592-021-01132-4

N/A

0.442DataRank · unranked

18 citations

Rhiju Das

CASP15 cryo‐EM protein and RNA targets: Refinement and analysis using experimental maps

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26644

N/A

0.416DataRank · unranked

15 citations

Rachael C. Kretsch, Luc Elliott, Joseph G. Beton, Andriy Kryshtafovych, Daniel J. Rigden +3 more

Computationally-guided design and selection of high performing ribosomal active site mutants

Nucleic Acids Research(2022)10.1093/nar/gkac1036

N/A

0.385DataRank · unranked

12 citations

Andrew M. Watkins, Do Soon Kim, Jessica Willi, Alexandra C Wooldredge, Ashty S. Karim +3 more

RNA structure landscape of S. cerevisiae introns

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.22.501175

N/A

0.351DataRank · unranked

7 citations

Rui Huang, Oarteze Hunter, Phillip Pham, Manuel Ares, Rhiju Das +1 more

RNA 3D modeling with FARFAR2, online

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.26.399451

N/A

0.319DataRank · unranked

4 citations

Rhiju Das, Andrew M. Watkins

RNA target highlights in CASP15: Evaluation of predicted models by structure providers

(2023)10.22541/au.168487314.47726735/v1

N/A

0.165DataRank · unranked

2 citations

Ebbe Sloth Andersen, Janusz M. Bujnicki, Wah Chiu, Rhiju Das, Bingnan Luo +11 more

Tertiary folds of the SL5 RNA from the 5′ proximal region of SARS-CoV-2 and related coronaviruses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.22.567964

N/A

0.165DataRank · unranked

2 citations

Lily Xu, Ivan N. Zheludev, Xueting Zhou, Rui Huang, Nye G +5 more

Anomalous reverse transcription through chemical modifications in polyadenosine stretches

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.07.897843

N/A

0.165DataRank · unranked

2 citations

Ved V. Topkar, Bei Liu, Tracy L. Hodges, Sarah C. Keane, Hashim M. Al‐Hashimi +2 more

Sharing and archiving nucleic acid structure mapping data

UNC Libraries(2020)10.17615/ph18-8h94

Top 78%

0.104DataRank

Top 78%1 citations

S. Bellaousov, C. D. S. Duncan, Rhiju Das, P. Cordero, P. Rocca-Serra +12 more

Visualization of human telomerase holoenzyme by cryo‐EM

The FASEB Journal(2022)10.1096/fasebj.2022.36.s1.0i130

N/A

0DataRank · unranked

0 citations

George E. Ghanim, Anne‐Marie M. van Roon, Zala Sekne, Adam J. Fountain, Ramya Rangan +3 more

Cryo-EM and antisense targeting of the 28-kDa frameshift stimulation element from the SARS-CoV-2 RNA genome

UNC Libraries(2022)10.17615/q6mz-jr12

N/A

0DataRank · unranked

0 citations

Ivan N. Zheludev, Grigore Pintilie, Timothy P. Sheahan, Raphael Haslecker, Ralph S. Baric +14 more

Assessment of three‐dimensional RNA structure prediction in CASP15

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26602

N/A

0DataRank · unranked

154 citations

Rachael C. Kretsch, Adam J. Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan +7 more

New prediction categories in CASP15

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26515

N/A

0DataRank · unranked

61 citations

Maciej Antczak, Marta Szachniuk, Tomasz Żok, Rachael C. Kretsch, Ramya Rangan +12 more

RNA target highlights in CASP15: Evaluation of predicted models by structure providers

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26550

N/A

0DataRank · unranked

53 citations

Ebbe Sloth Andersen, Janusz M. Bujnicki, Wah Chiu, Rhiju Das, Bingnan Luo +11 more

Community science designed ribosomes with beneficial phenotypes

Nature Communications(2023)10.1038/s41467-023-35827-3

N/A

0DataRank · unranked

16 citations

Andrew M. Watkins, Roger Wellington-Oguri, Jonathan Romano, Camila Kofman, Alysse DeFoe +9 more

Assessment of three-dimensional RNA structure prediction in CASP15

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.25.538330

N/A

0DataRank · unranked

30 citations

Rachael C. Kretsch, Adam J. Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan +7 more

New prediction categories in CASP15

Desy publication database (The Deutsches Elektronen-Synchrotron)(2023)10.22541/au.168371643.39402261/v1

N/A

0DataRank · unranked

4 citations

Maciej Antczak, Marta Szachniuk, Rachael C. Kretsch, Ramya Rangan, Phillip Pham +11 more

RNA-Puzzles Round V: blind predictions of 23 RNA structures

Nature Methods(2024)10.1038/s41592-024-02543-9

N/A

0DataRank · unranked

65 citations

Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa R. H. de Aquino, Nagendar Goud Badepally +94 more

Compact RNA sensors for increasingly complex functions of multiple inputs

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.04.572289

N/A

0DataRank · unranked

0 citations

Johan O. L. Andreasson, Feriel Mélaïne, Wipapat Kladwang, Michelle J. Wu, Fernando Portela +9 more

OpenASO: RNA Rescue — designing splice-modulating antisense oligonucleotides through community science

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.15.618608

N/A

0DataRank · unranked

0 citations

Martin Guiterrez, Jill Townley, Jonathan Romano, Jennifer Pearl, Guillermo Chacaltana +5 more

Functional Relevance of CASP16 Nucleic Acid Predictions as Evaluated by Structure Providers

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70043

N/A

0DataRank · unranked

12 citations

Reinhard Albrecht, Ebbe Sloth Andersen, Hsuan‐Ai Chen, Wah Chiu, Rhiju Das +28 more

Assessment of Protein Complex Predictions in CASP16 : Are We Making Progress?

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70068

N/A

0DataRank · unranked

8 citations

Rongqing Yuan, Andriy Kryshtafovych, Jimin Pei, Rachael C. Kretsch, R. Dustin Schaeffer +5 more

Comprehensive analysis of Saccharomyces cerevisiae intron structures in vivo

Nature Structural & Molecular Biology(2025)10.1038/s41594-025-01565-x

N/A

0DataRank · unranked

8 citations

Rui Huang, Oarteze Hunter, Phillip Pham, Manuel Ares, Rhiju Das +1 more

Compact RNA sensors for increasingly complex functions of multiple inputs

Nature Chemistry(2025)10.1038/s41557-025-01907-8

N/A

0DataRank · unranked

3 citations

Johan O. L. Andreasson, Feriel Mélaïne, Wipapat Kladwang, Michelle J. Wu, Fernando Portela +9 more

Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16

Proteins Structure Function and Bioinformatics(2025)10.1002/prot.70079

N/A

0DataRank · unranked

1 citations

Elisa Posani, Eugene F. Baulin, Janusz M. Bujnicki, Giovanni Bussi, Thomas E. Cheatham +46 more

Functional relevance of CASP16 nucleic acid predictions as evaluated by structure providers

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.15.649049

N/A

0DataRank · unranked

10 citations

Reinhard Albrecht, Ebbe Sloth Andersen, Hsuan‐Ai Chen, Wah Chiu, Rhiju Das +28 more

RNA switch model for localization and translation of the myelin basic protein mRNA

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.19.689361

N/A

0DataRank · unranked

3 citations

Vivian Wu, Low Tone Ho, Nicholas Ambiel, Alex Valenzuela, Kailee Yoshimura +4 more

Template-based RNA structure prediction advanced through a blind code competition

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.30.696949

N/A

0DataRank · unranked

2 citations

Shujun He, Toshiyuki Oda, G Gangadhareswar Rao, Yehyun Kim, Raehyun Kim +54 more

Complex Water Networks Visualized through 2.2-2.3 Å Cryogenic Electron Microscopy of RNA

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.23.634578

N/A

0DataRank · unranked

1 citations

Shanshan Li, Grigore Pintilie, Michael Z. Palo, David A. Case, Rhiju Das +3 more

Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures

Nature Methods(2020)10.1038/s41592-020-0878-9

N/A

0DataRank · unranked

191 citations

Kaiming Zhang, Zhaoming Su, Andrew M. Watkins, Wipapat Kladwang, Shanshan Li +8 more

Blind prediction of complex water and ion ensembles around RNA in CASP16

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.03.685595

N/A

0DataRank · unranked

0 citations

Elisa Posani, Eugene F. Baulin, Janusz M. Bujnicki, Giovanni Bussi, Thomas E. Cheatham +46 more

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

RNA(2020)10.1261/rna.075341.120

N/A

0DataRank · unranked

173 citations

Ryszard W. Adamiak, Maciej Antczak, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen +45 more

RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look

RNA(2020)10.1261/rna.076141.120

N/A

0DataRank · unranked

293 citations

Ivan N. Zheludev, Rachel J. Hagey, Edward A. Pham, Hannah K. Wayment-Steele, Jeffrey S. Glenn +2 more

FARFAR2: Improved De Novo Rosetta Prediction of Complex Global RNA Folds

Structure(2020)10.1016/j.str.2020.05.011

N/A

0DataRank · unranked

288 citations

Ramya Rangan, Rhiju Das, Andrew M. Watkins

RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction

UNC Libraries(2020)10.17615/4xwy-qb25

N/A

0DataRank · unranked

19 citations

I. Tuszynska, J. Santalucia, Rhiju Das, F. Ding, P. Sripakdeevong +27 more

Transcription polymerase–catalyzed emergence of novel RNA replicons

Science(2020)10.1126/science.aay0688

N/A

0DataRank · unranked

38 citations

Lucas R. Blauch, Michał R. Szymański, Rhiju Das, Sindy K. Y. Tang, Y. Whitney Yin +2 more

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

UNC Libraries(2020)10.17615/rh9e-gx23

N/A

0DataRank · unranked

5 citations

Janusz M. Bujnicki, Feng Ding, Greggory M. Rice, Wipapat Kladwang, J.J. Trausch +41 more

PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design

Preprints.org(2020)10.20944/preprints202002.0097.v1

N/A

0DataRank · unranked

4 citations

Jared Adolf‐Bryfogle, Jason C. Klima, Sergey Lyskov, Jason W. Labonte, Steven J. Bertolani +16 more

Functional and structural basis of extreme non-coding conservation in vertebrate 5’UTRs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.29.165878

N/A

0DataRank · unranked

0 citations

Elif Sarinay Cenik, Lihua Jiang, Hua Tang, Rhiju Das, Maria Barna +1 more

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

UNC Libraries(2020)10.17615/7c93-y342

N/A

0DataRank · unranked

0 citations

Tanja Kortemme, Benjamin Borgo, James J. Havranek, Fang‐Chieh Chou, Bryan S. Der +12 more

The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design

UNC Libraries(2020)10.17615/6sk2-v510

N/A

0DataRank · unranked

0 citations

Matthew J. O’Meara, Philip Bradley, Maxim V. Shapovalov, Rhiju Das, Hahnbeom Park +15 more

Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design

UNC Libraries(2020)10.17615/xrww-m716

N/A

0DataRank · unranked

0 citations

Brooke N. Bullock, Richard Bonneau, Paramjit S. Arora, Kent Kirshenbaum, Timothy W. Craven +14 more

Geometric deep learning of RNA structure

Science(2021)10.1126/science.abe5650

N/A

0DataRank · unranked

451 citations

Stephan Eismann, Andrew M. Watkins, Ramya Rangan, Masha Karelina, Rhiju Das +2 more

Theoretical basis for stabilizing messenger RNA through secondary structure design

Nucleic Acids Research(2021)10.1093/nar/gkab764

N/A

0DataRank · unranked

187 citations

Do Soon Kim, Christian A. Choe, John J. Nicol, Roger Wellington-Oguri, Andrew M. Watkins +5 more

Cryo-EM structures of full-length Tetrahymena ribozyme at 3.1 Å resolution

Nature(2021)10.1038/s41586-021-03803-w

N/A

0DataRank · unranked

110 citations

Kaiming Zhang, Kalli Kappel, Shanshan Li, Michael Z. Palo, Grigore Pintilie +6 more

Functional and structural basis of extreme conservation in vertebrate 5′ untranslated regions

Nature Genetics(2021)10.1038/s41588-021-00830-1

N/A

0DataRank · unranked

29 citations

Elif Sarinay Cenik, Lihua Jiang, Hua Tang, Rhiju Das, Maria Barna +1 more

Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis

Nature Communications(2021)10.1038/s41467-021-22489-2

N/A

0DataRank · unranked

26 citations

Tao Sun, Anna Shcherbina, Qin Li, Inga Jarmoskaite, Kalli Kappel +5 more

RiboDraw: semiautomated two-dimensional drawing of RNA tertiary structure diagrams

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab091

N/A

0DataRank · unranked

20 citations

Andrew M. Watkins, Rhiju Das

Community science designed ribosomes with beneficial phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.05.458952

N/A

0DataRank · unranked

7 citations

Andrew M. Watkins, Roger Wellington-Oguri, Jonathan Romano, Camila Kofman, Alysse DeFoe +9 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438423

N/A

0DataRank · unranked

4 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +43 more

Three-dimensional structure-guided evolution of a ribosome with tethered subunits

Nature Chemical Biology(2022)10.1038/s41589-022-01064-w

N/A

0DataRank · unranked

21 citations

Andrew M. Watkins, Erik J. Bidstrup, Joongoo Lee, Ved V. Topkar, Camila Kofman +7 more

Rhiju Das

Indexed papers

Top data-sharing exemplar

Papers