🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Yushu Shi

Cornell University

ORCID: 0000-0001-7575-9706
Biochemistry, Genetics and Molecular BiologyComputer ScienceMathematicsAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “Nodal immune flare mimics nodal disease progression following neoadjuvant immune checkpoint inhibitors in non-small cell lung cancer”.

Nodal immune flare mimics nodal disease progression following neoadjuvant immune checkpoint inhibitors in non-small cell lung cancer

Nature Communications(2021)10.1038/s41467-021-25188-0
N/A
3.1DataRank · unranked
110 citations

Annikka Weissferdt, Myrna C. B. Godoy, William N. William, Cheuk Hong Leung, Heather Lin +23 more

Combined Beta Metric for Unsupervised Clustering of Microbiome Data

(2020)10.21203/rs.3.rs-17968/v1
N/A
0DataRank · unranked
0 citations

Liangliang Zhang, Christine B. Peterson, Kim‐Anh Do, Robert R. Jenq, Yushu Shi

ProgPerm: Progressive permutation for a dynamic representation of the robustness of microbiome discoveries

BMC Bioinformatics(2021)10.1186/s12859-021-04061-3
N/A
0DataRank · unranked
4 citations

Yushu Shi, Kim‐Anh Do, Christine B. Peterson, Robert R. Jenq, Liangliang Zhang

Diet-derived metabolites and mucus link the gut microbiome to fever after cytotoxic cancer treatment

Science Translational Medicine(2022)10.1126/scitranslmed.abo3445
N/A
0DataRank · unranked
63 citations

Diana H. Wiesnoski, Chia‐Chi Chang, Wen-Bin Tsai, Dung Pham, Saira Ahmed +54 more

Performance determinants of unsupervised clustering methods for microbiome data

Microbiome(2022)10.1186/s40168-021-01199-3
N/A
0DataRank · unranked
51 citations

Liangliang Zhang, Christine B. Peterson, Kim‐Anh Do, Robert R. Jenq, Yushu Shi

Reduced housing density improves statistical power of murine gut microbiota studies

Cell Reports(2022)10.1016/j.celrep.2022.110783
N/A
0DataRank · unranked
42 citations

Joanna N. Copio, Yushu Shi, Su-Min Kang, Craig L. Franklin, Aaron C. Ericsson +1 more

Transfer efficiency and impact on disease phenotype of differing methods of gut microbiota transfer

Scientific Reports(2022)10.1038/s41598-022-24014-x
N/A
0DataRank · unranked
8 citations

Yushu Shi, Matthew Burch, Benjamin Olthoff, Aaron C. Ericsson, Craig L. Franklin +1 more

Development and testing of a polygenic risk score for breast cancer aggressiveness

medRxiv(2022)10.1101/2022.08.26.22278957
N/A
0DataRank · unranked
2 citations

Jacquelyn Roger, Christina Yau, Denise M. Wolf, Gillian L. Hirst, Lamorna Brown Swigart +18 more

Development and testing of a polygenic risk score for breast cancer aggressiveness

npj Precision Oncology(2023)10.1038/s41698-023-00382-z
N/A
0DataRank · unranked
11 citations

Jacquelyn Roger, Christina Yau, Denise M. Wolf, Gillian L. Hirst, Lamorna Brown Swigart +18 more

Sparse tree-based clustering of microbiome data to characterize microbiome heterogeneity in pancreatic cancer

Journal of the Royal Statistical Society Series C (Applied Statistics)(2023)10.1093/jrsssc/qlac002
N/A
0DataRank · unranked
6 citations

Liangliang Zhang, Kim‐Anh Do, Robert R. Jenq, Christine B. Peterson, Yushu Shi

survivalContour: Visualizing predicted survival via colored contour plots

arXiv (Cornell University)(2023)10.48550/arxiv.2308.13737
N/A
0DataRank · unranked
0 citations

Liangliang Zhang, Kim‐Anh Do, Robert R. Jenq, Christine B. Peterson, Yushu Shi

Constructing phylogenetic trees for microbiome data analysis: A mini-review

Computational and Structural Biotechnology Journal(2024)10.1016/j.csbj.2024.10.032
N/A
0DataRank · unranked
11 citations

Xi Qiao, Yushu Shi, Christine B. Peterson, William S. Bush, Fabio Cominelli +3 more

survivalContour: visualizing predicted survival via colored contour plots

Bioinformatics Advances(2024)10.1093/bioadv/vbae105
N/A
0DataRank · unranked
0 citations

Liangliang Zhang, Kim‐Anh Do, Robert R. Jenq, Christine B. Peterson, Yushu Shi

aPCoA: covariate adjusted principal coordinates analysis

Bioinformatics(2020)10.1093/bioinformatics/btaa276
N/A
0DataRank · unranked
67 citations

Liangliang Zhang, Kim‐Anh Do, Christine B. Peterson, Robert R. Jenq, Yushu Shi

CAT: a conditional association test for microbiome data using a permutation approach

Briefings in Bioinformatics(2025)10.1093/bib/bbaf326
N/A
0DataRank · unranked
0 citations

Liangliang Zhang, Kim‐Anh Do, Robert R. Jenq, Christine B. Peterson, Yushu Shi