🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Shuai Zeng

University of Missouri

ORCID: 0000-0001-7632-427X
Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile
0.414Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Large-Scale Integrative Analysis of Soybean Transcriptome Using an Unsupervised Autoencoder Model

Frontiers in Plant Science(2022)10.3389/fpls.2022.831204
Top 45%
0.414DataRank
Top 45%7 citations

Chunhui Xu, Shuai Zeng, Li Su, Trupti Joshi, Gary Stacey +2 more

Papers

Driven by 13 papers — median percentile 55. Top paper: “G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers”.

G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers

Nucleic Acids Research(2021)10.1093/nar/gkab407
N/A
0.561DataRank · unranked
41 citations

Ziting Mao, Yijie Ren, Duolin Wang, Dong Xu, Trupti Joshi +1 more

Parameter-efficient fine-tuning on large protein language models improves signal peptide prediction

Genome Research(2024)10.1101/gr.279132.124
N/A
0.520DataRank · unranked
31 citations

Duolin Wang, Lei Jiang, Dong Xu, Shuai Zeng

Large-Scale Integrative Analysis of Soybean Transcriptome Using an Unsupervised Autoencoder Model

Frontiers in Plant Science(2022)10.3389/fpls.2022.831204
Top 45%
0.414DataRank
Top 45%7 citations

Chunhui Xu, Shuai Zeng, Li Su, Trupti Joshi, Gary Stacey +2 more

Integrating Protein Language Model and Molecular Dynamics Simulations to Discover Antibiofouling Peptides

Langmuir(2024)10.1021/acs.langmuir.4c04140
N/A
0.241DataRank · unranked
4 citations

Sean Bailey, Duolin Wang, Shuai Zeng, Dong Xu, Qing Shao +1 more

PEFT-SP: Parameter-Efficient Fine-Tuning on Large Protein Language Models Improves Signal Peptide Prediction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.04.565642
N/A
0DataRank · unranked
13 citations

Duolin Wang, Dong Xu, Shuai Zeng

S‐PLM: Structure‐Aware Protein Language Model via Contrastive Learning Between Sequence and Structure

Advanced Science(2024)10.1002/advs.202404212
N/A
0DataRank · unranked
30 citations

Mahdi Pourmirzaei, Usman L. Abbas, Shuai Zeng, Negin Manshour, Farzaneh Esmaili +6 more

S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.06.552203
N/A
0DataRank · unranked
16 citations

Mahdi Pourmirzaei, Usman L. Abbas, Shuai Zeng, Negin Manshour, Farzaneh Esmaili +6 more

Epigenetic DNA Modifications Upregulate SPRY2 in Human Colorectal Cancers

Cells(2021)10.3390/cells10102632
N/A
0DataRank · unranked
9 citations

Shuai Zeng, Zhen Lyu, Wei Zhang, Xu Zhang, Urszula Dougherty +7 more

G2PDeep-v2: a web-based deep-learning framework for phenotype prediction and biomarker discovery using multi-omics data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.10.612292
N/A
0DataRank · unranked
2 citations

Trinath Adusumilli, Sania Zafar Awan, Manish Sridhar Immadi, Dong Xu, Trupti Joshi +1 more

CrossMP: Enabling Cross-Modality Translation between Single-Cell RNA-Seq and Single-Cell ATAC-Seq through Web-Based Portal

Genes(2024)10.3390/genes15070882
N/A
0DataRank · unranked
0 citations

Sabin Dahal, Shuai Zeng, Juexin Wang, Dong Xu, Trupti Joshi +1 more

G2PDeep-v2: A Web-Based Deep-Learning Framework for Phenotype Prediction and Biomarker Discovery for All Organisms Using Multi-Omics Data

Biomolecules(2025)10.3390/biom15121673
N/A
0DataRank · unranked
2 citations

Trinath Adusumilli, Sania Zafar Awan, Manish Sridhar Immadi, Dong Xu, Trupti Joshi +1 more

Leveraging Large Language Models for Infectious Disease Surveillance—Using a Web Service for Monitoring COVID-19 Patterns From Self-Reporting Tweets: Content Analysis

Journal of Medical Internet Research(2025)10.2196/63190
N/A
0DataRank · unranked
4 citations

Ziyang Zhang, Shuai Zeng, Joel Hilliard, Guanghui An, Xiaoting Tang +5 more

MULoc-target: Targeting peptide classification and detection using a protein language model

Briefings in Bioinformatics(2025)10.1093/bib/bbaf436
N/A
0DataRank · unranked
1 citations

Duolin Wang, Shuai Zeng, Yichuan Zhang, Lei Jiang, Mahdi Pourmirzaei +6 more