🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

J. Alfredo Blakeley‐Ruiz

North Carolina State University

ORCID: 0000-0001-7638-5849

Biochemistry, Genetics and Molecular BiologyChemistryAgricultural and Biological SciencesMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

1.9Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Considerations for constructing a protein sequence database for metaproteomics

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.01.018

Top 11%

1.9DataRank

Top 11%82 citations

Manuel Kleiner, J. Alfredo Blakeley‐Ruiz

Papers

Driven by 12 papers — median percentile 89. Top paper: “Considerations for constructing a protein sequence database for metaproteomics”.

Considerations for constructing a protein sequence database for metaproteomics

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.01.018

Top 11%

1.9DataRank

Top 11%82 citations

Manuel Kleiner, J. Alfredo Blakeley‐Ruiz

The microbiologist's guide to metaproteomics

iMeta(2025)10.1002/imt2.70031

N/A

0.593DataRank · unranked

51 citations

Jean Armengaud, Dirk Benndorf, J. Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng +27 more

Dietary protein source alters gut microbiota composition and function

The ISME Journal(2025)10.1093/ismejo/wraf048

N/A

0.557DataRank · unranked

40 citations

Alexandria Bartlett, Arthur S. McMillan, Ayesha Awan, Molly E. Vanhoy, Alissa K Meyerhoffer +6 more

Data‐Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

PROTEOMICS(2025)10.1002/pmic.202400187

N/A

0.434DataRank · unranked

17 citations

J. Alfredo Blakeley‐Ruiz, Annaliese Meyer, Simina Vintila, Matthew R. McIlvin, Tim Van Den Bossche +6 more

Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies

PROTEOMICS(2025)10.1002/pmic.202400149

N/A

0.257DataRank · unranked

4 citations

J. Alfredo Blakeley‐Ruiz, Tanner Richie, Casey M. Theriot, Manuel Kleiner, Alexandria Bartlett

Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.07.570621

N/A

0.104DataRank · unranked

1 citations

J. Alfredo Blakeley‐Ruiz, Tanner Richie, Casey M. Theriot, Manuel Kleiner, Alexandria Bartlett

Dietary protein from different sources escapes host digestion and is differentially modified by gut microbiota

Food & Function(2025)10.1039/d5fo01132a

N/A

0DataRank · unranked

9 citations

Alexandria Bartlett, J. Alfredo Blakeley‐Ruiz, Tanner Richie, Casey M. Theriot, Manuel Kleiner +1 more

Metaproteomics-based stable isotope fingerprinting links intestinal bacteria to their carbon source and captures diet-induced substrate switching

The ISME Journal(2025)10.1093/ismejo/wraf127

N/A

0DataRank · unranked

1 citations

J. Alfredo Blakeley‐Ruiz, Manuel Kleiner, Angie L. Mordant

Dietary protein from different sources escapes host digestion and is differentially modified by gut microbiota

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.26.600830

N/A

0DataRank · unranked

5 citations

Alexandria Bartlett, J. Alfredo Blakeley‐Ruiz, Tanner Richie, Casey M. Theriot, Manuel Kleiner +1 more

Source of dietary protein alters the abundance of proteases, intestinal epithelial and immune proteins both directly and via interactions with the gut microbiota

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.09.632171

N/A

0DataRank · unranked

2 citations

Alexandria Bartlett, J. Alfredo Blakeley‐Ruiz, Tanner Richie, Amanda L. Ziegler, Manuel Kleiner +1 more

Stable isotope fingerprinting can directly link intestinal microorganisms with their carbon source and captures diet-induced substrate switching in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627769

N/A

0DataRank · unranked

1 citations

J. Alfredo Blakeley‐Ruiz, Manuel Kleiner, Angie L. Mordant

Data-Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.18.613707

N/A

0DataRank · unranked

6 citations

J. Alfredo Blakeley‐Ruiz, Annaliese Meyer, Simina Vintila, Matthew R. McIlvin, Tim Van Den Bossche +6 more