Andrew C. Adey

Also affiliated with Pacific Northwest National Laboratory, Oregon Health & Science University, Environmental Molecular Sciences Laboratory, University of Portland

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.1Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive single-cell transcriptional profiling of a multicellular organism

Science(2017)10.1126/science.aam8940

Top 2%

8.4DataRank

Top 2%1581 citations

Jonathan S. Packer, Vijay Ramani, Darren A. Cusanovich, Chau Huynh, Xiaojie Qiu +9 more

Papers

Driven by 39 papers — median percentile 48. Top paper: “Comprehensive single-cell transcriptional profiling of a multicellular organism”.

Comprehensive single-cell transcriptional profiling of a multicellular organism

Science(2017)10.1126/science.aam8940

Top 2%

8.4DataRank

Top 2%1581 citations

Jonathan S. Packer, Vijay Ramani, Darren A. Cusanovich, Chau Huynh, Xiaojie Qiu +9 more

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

MITI minimum information guidelines for highly multiplexed tissue images

Nature Methods(2022)10.1038/s41592-022-01415-4

N/A

1.7DataRank · unranked

88 citations

Clarence Yapp, Artem Sokolov, Sheila M. Reynolds, Yu-An Chen, Damir Sudar +95 more

Systematic benchmarking of single-cell ATAC-sequencing protocols

Nature Biotechnology(2023)10.1038/s41587-023-01881-x

N/A

1.1DataRank · unranked

52 citations

Gert Hulselmans, Christopher Flerin, Paula Soler-Vila, Albert Rafels, Valerie Christiaens +42 more

Ongoing replication stress tolerance and clonal T cell responses distinguish liver and lung recurrence and outcomes in pancreatic cancer

Nature Cancer(2025)10.1038/s43018-024-00881-3

N/A

0.986DataRank · unranked

34 citations

Jennifer Eng, Carl Pelz, Kevin Hawthorne, Patrick J. Worth, Shamilene Sivagnanam +33 more

Population screening shows risk of inherited cancer and familial hypercholesterolemia in Oregon

The American Journal of Human Genetics(2023)10.1016/j.ajhg.2023.06.014

N/A

0.592DataRank · unranked

14 citations

Amiee Potter, Catherine C. Driscoll, Gregory Goh, John Letaw, Sarah McCabe +29 more

Epigenetic loss of heterogeneity from low to high grade localized prostate tumours

Nature Communications(2021)10.1038/s41467-021-27615-8

N/A

0.533DataRank · unranked

34 citations

Alex Chitsazan, Zeynep Sayar, George Thomas, Andrew J. Fields, Ryan Kopp +3 more

sciMET-cap: high-throughput single-cell methylation analysis with a reduced sequencing burden

Genome biology(2024)10.1186/s13059-024-03306-7

N/A

0.434DataRank · unranked

13 citations

Ruth V. Nichols, Lauren Rylaarsdam, Brendan L. O’Connell, Theodore P. Braun, Andrew C. Adey +1 more

Atlas-scale single-cell DNA methylation profiling with sciMETv3

Cell Genomics(2024)10.1016/j.xgen.2024.100726

N/A

0.434DataRank · unranked

17 citations

Lauren Rylaarsdam, Brendan L. O’Connell, Zohar Shipony, Nika Iremadze, Sonia N. Acharya +2 more

Multiplex imaging of localized prostate tumors reveals altered spatial organization of AR-positive cells in the microenvironment

iScience(2024)10.1016/j.isci.2024.110668

N/A

0.426DataRank · unranked

11 citations

Zeynep Sayar, Guillaume Thibault, Erik A. Burlingame, Marigold Kuykendall, Jennifer Eng +12 more

High-content single-cell combinatorial indexing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.11.425995

N/A

0.373DataRank · unranked

11 citations

Dmitry Pokholok, Brendan L. O’Connell, Casey Thornton, Fan Zhang, Brian J. O’Roak +6 more

Supervised learning of high-confidence phenotypic subpopulations from single-cell data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.23.533712

N/A

0.324DataRank · unranked

6 citations

Canping Chen, Alexey V. Danilov, Susan Liu, Xiangnan Guan, Shunyi Du +9 more

Novel recruitment approaches and operational results for a statewide population Cohort for cancer research: The Healthy Oregon Project

Journal of Clinical and Translational Science(2024)10.1017/cts.2024.9

N/A

0.241DataRank · unranked

4 citations

Autumn Shafer, Katie Johnson-Camacho, Andrew C. Adey, Pavana Anur, Kim A. Brown +12 more

Epigenetic and transcriptomic alterations precede amyloidosis in the Alzheimer’s disease AppNL-G-F knock-in mouse model

Scientific Reports(2025)10.1038/s41598-025-28244-7

N/A

0.218DataRank · unranked

3 citations

Cora E. Layman, Brett A. Davis, Alexandra Pederson, Abigail O’Niel, Sarah Holden +11 more

sciMET-cap: High-throughput single-cell methylation analysis with a reduced sequencing burden

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.12.548718

N/A

0.165DataRank · unranked

2 citations

Ruth V. Nichols, Lauren Rylaarsdam, Brendan L. O’Connell, Theodore P. Braun, Andrew C. Adey +1 more

Ten(10)X-compatible Combinatorial Indexing ATAC sequencing (txci-ATAC-seq) v1

(2023)10.17504/protocols.io.dm6gp3o68vzp/v1

N/A

0.104DataRank · unranked

1 citations

Ryan M. Mulqueen, Andrew C. Adey, Darren A. Cusanovich, Hao Zhang

Phenotype-guided subpopulation identification from single-cell sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.05.137240

N/A

0.104DataRank · unranked

1 citations

Xiangnan Guan, Amy E. Moran, David Z. Qian, Pepper Schedin, Andrew C. Adey +3 more

Differential cell signaling testing for cell-cell communication inference from single-cell data by dominoSignal

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.02.651747

N/A

0.104DataRank · unranked

1 citations

Orian Stapleton, Kavita Krishnan, Sushma Nagaraj, Dmitrijs Lvovs, Christopher Cherry +13 more

Longitudinal and multimodal auditing of tumor adaptation to CDK4/6 inhibitors in HR+ metastatic breast cancers

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.27.557464

N/A

0.104DataRank · unranked

1 citations

Julian Egger, Cameron Watson, Shamilene Sivagnanam, Koei Chin, Kevin Hawthorne +18 more

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850232

Top 100%

0DataRank

Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more

Single-cell DNA methylation analysis tool Amethyst resolves distinct non-CG methylation patterns in human astrocytes and oligodendrocytes

Communications Biology(2025)10.1038/s42003-025-08859-2

N/A

0DataRank · unranked

0 citations

Benjamin W. Skubi, Ruth V. Nichols, Brendan L. O’Connell, Jack Henry Kotnik, Stephen Coleman +3 more

Processed data supplementary to "Systematic benchmarking of single-cell ATAC sequencing protocols"

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.5850231

Top 100%

0DataRank

Top 100%0 citations

Christopher Flerin, Paula Soler, Albert Rafels, Gert Hulselmans, Valerie Christiaens +25 more

Cas12a-Capture: a novel, low-cost, and scalable method for targeted sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.18.388876

N/A

0DataRank · unranked

0 citations

Andrew Nishida, Brendan L. O’Connell, Caitlin V. Miller, Sally Grindstaff, Casey Thornton +4 more

Neutralization of SARS-CoV-2 variants by convalescent and BNT162b2 vaccinated serum

Nature Communications(2021)10.1038/s41467-021-25479-6

N/A

0DataRank · unranked

134 citations

Hans C. Leier, Zoë L. Lyski, Savannah K. McBride, Felicity J. Coulter, Jules B. Weinstein +14 more

Spatially mapped single-cell chromatin accessibility

Nature Communications(2021)10.1038/s41467-021-21515-7

N/A

0DataRank · unranked

89 citations

Ryan M. Mulqueen, Kristof Törkenczy, Andrew Nishida, Eve G. Lowenstein, Andrew J. Fields +8 more

Tagmentation-based single-cell genomics

Genome Research(2021)10.1101/gr.275223.121

N/A

0DataRank · unranked

36 citations

Andrew C. Adey

Phenotype-guided subpopulation identification from single-cell sequencing data

Research Square(2021)10.21203/rs.3.rs-493014/v1

N/A

0DataRank · unranked

2 citations

Xiangnan Guan, Amy E. Moran, David Z. Qian, Pepper Schedin, Mu‐Shui Dai +6 more

Single-cell analysis of localized low- and high-grade prostate cancers

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.16.440238

N/A

0DataRank · unranked

1 citations

Alex Chitsazan, Zeynep Sayar, George Thomas, Andrew T. Fields, Ryan Kopp +3 more

High-throughput robust single-cell DNA methylation profiling with sciMETv2

Nature Communications(2022)10.1038/s41467-022-35374-3

N/A

0DataRank · unranked

66 citations

Brendan L. O’Connell, Ryan M. Mulqueen, Jerushah Thomas, Ashley R. Woodfin, Sonia N. Acharya +5 more

Shared and Distinct Functional Effects of Patient-Specific Tbr1 Mutations on Cortical Development

Journal of Neuroscience(2022)10.1523/jneurosci.0409-22.2022

N/A

0DataRank · unranked

12 citations

Rebecca Barnard, Jennifer N. Jahncke, Sally Grindstaff, Lev M. Fedorov, Andrew C. Adey +3 more

Shared and distinct functional effects of patient-specific Tbr1 mutations on cortical development

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.27.478064

N/A

0DataRank · unranked

1 citations

Rebecca Barnard, Jennifer N. Jahncke, Sally Grindstaff, Lev M. Fedorov, Andrew C. Adey +3 more

Accessible high-throughput single-cell whole-genome sequencing with paired chromatin accessibility

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100625

N/A

0DataRank · unranked

9 citations

Travis W. Moore, Brendan L. O’Connell, Ruth V. Nichols, John Muschler, Dove Keith +6 more

Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing

Genome Research(2023)10.1101/gr.276655.122

N/A

0DataRank · unranked

9 citations

Ruth V. Nichols, Dmitry Pokholok, Jerushah Thomas, Sonia N. Acharya, Andrew Nishida +6 more

txci-ATAC-seq, a massive-scale single-cell technique to profile chromatin accessibility

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.11.540245

N/A

0DataRank · unranked

3 citations

Ryan M. Mulqueen, Natalie Iannuzo, Dominique O Farrera, Francesca Polverino, James J. Galligan +4 more

Identification of Cellular Interactions in the Tumor Immune Microenvironment Underlying CD8 T Cell Exhaustion

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.566384

N/A

0DataRank · unranked

2 citations

Amy E. Moran, Andrew C. Adey, Shannon K. McWeeney, Guanming Wu, Christopher Klocke

Multiplex imaging of localized prostate tumors reveals changes in mast cell type composition and spatial organization of AR-positive cells in the tumor microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.18.553854

N/A

0DataRank · unranked

0 citations

Zeynep Sayar, Guillaume Thibault, Erik A. Burlingame, Jennifer Eng, Alex Chitsazan +10 more

The TLK-ASF1 histone chaperone pathway plays a critical role in IL-1β–mediated AML progression

Blood(2024)10.1182/blood.2023022079

N/A

0DataRank · unranked

8 citations

Mona Mohammadhosseini, John McClatchy, Marina Villamor-Payà, Sophia Jeng, Daniel Bottomly +10 more

Dual states of murine Bmi1-expressing intestinal stem cells drive epithelial development utilizing non-canonical Wnt signaling

Developmental Cell(2025)10.1016/j.devcel.2025.03.014

N/A

0DataRank · unranked

12 citations

Nicole R. Giske, Sidharth K. Sengupta, Patrick Conley, John Swain, Ashvin Nair +11 more

Epigenetic and Transcriptomic Alterations Precede Amyloidosis in the Hippocampus of the Alzheimer’s Disease App NL-G-F Knock in Mouse Model

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.20.639336

N/A

0DataRank · unranked

0 citations

Cora E. Layman, Brett A. Davis, Alexandra Pederson, Abigail O’Niel, Sarah Holden +11 more

Andrew C. Adey

Indexed papers

Top data-sharing exemplar

Papers