🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Ellen M. Quardokus

Indiana University Bloomington

ORCID: 0000-0001-7655-4833

Also affiliated with Indiana University

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.9Author DataRank

Indexed papers

20in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 20 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Anatomical structures, cell types and biomarkers of the Human Reference Atlas

Nature Cell Biology(2021)10.1038/s41556-021-00788-6
Top 8%
2.6DataRank
Top 8%123 citations

Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland +31 more

Papers

Driven by 32 papers — median percentile 41. Top paper: “SenNet recommendations for detecting senescent cells in different tissues”.

SenNet recommendations for detecting senescent cells in different tissues

Nature Reviews Molecular Cell Biology(2024)10.1038/s41580-024-00738-8
N/A
4.6DataRank · unranked
356 citations

Adam D. Hudgins, Adarsh Rajesh, Alberto Pappalardo, Alla Y. Karpova, Amit Dey +74 more

Anatomical structures, cell types and biomarkers of the Human Reference Atlas

Nature Cell Biology(2021)10.1038/s41556-021-00788-6
Top 8%
2.6DataRank
Top 8%123 citations

Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland +31 more

NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health

Nature Aging(2022)10.1038/s43587-022-00326-5
N/A
2.1DataRank · unranked
128 citations

Patty J. Lee, Christopher C. Benz, Philip D. Blood, Katy Börner, Judith Campisi +93 more

Functional tissue units in the Human Reference Atlas

Nature Communications(2025)10.1038/s41467-024-54591-6
Top 36%
0.538DataRank
Top 36%19 citations

Katy Börner, Bruce W. Herr, Ellen M. Quardokus, Marcell Nagy, Katherine S. Gustilo +5 more

Anatomical structures, cell types, and biomarkers of the healthy human blood vasculature

Scientific Data(2023)10.1038/s41597-023-02018-0
Top 36%
0.536DataRank
Top 36%15 citations

Sujin Lee, Rajeev Malhotra, Marc K. Halushka, Katherine S. Gustilo, Ellen M. Quardokus +4 more

Tissue registration and exploration user interfaces in support of a human reference atlas

Communications Biology(2022)10.1038/s42003-022-03644-x
Top 37%
0.516DataRank
Top 37%21 citations

Andreas Bueckle, Bruce W. Herr, Leonard E. Cross, Ellen M. Quardokus, Elizabeth G. Record +10 more

Specimen, biological structure, and spatial ontologies in support of a Human Reference Atlas

Scientific Data(2023)10.1038/s41597-023-01993-8
Top 40%
0.479DataRank
Top 40%17 citations

Josef Hardi, Ellen M. Quardokus, Andreas Bueckle, Lu Chen, Fusheng Wang +5 more

Segmentation of human functional tissue units in support of a Human Reference Atlas

Communications Biology(2023)10.1038/s42003-023-04848-5
Top 41%
0.462DataRank
Top 41%14 citations

Leah L. Godwin, Yingnan Ju, Naveksha Sood, Ellen M. Quardokus, Andreas Bueckle +10 more

Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.31.446440
Top 48%
0.381DataRank
Top 48%8 citations

Sarah A. Teichmann, Ellen M. Quardokus, James C. Gee, Kristen Browne, David Osumi-Sutherland +31 more

Robust and generalizable segmentation of human functional tissue units

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.09.467810
Top 51%
0.346DataRank
Top 51%4 citations

Yingnan Ju, Naveksha Sood, Yashvardhan Jain, Ellen M. Quardokus, Andreas Bueckle +10 more

Specimen, Biological Structure, and Spatial Ontologies in Support of a Human Reference Atlas

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.08.507220
Top 53%
0.320DataRank
Top 53%5 citations

Josef Hardi, Ellen M. Quardokus, Andreas Bueckle, Lu Chen, Fusheng Wang +5 more

Tissue Registration and Exploration User Interfaces in support of a Human Reference Atlas

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.30.474265
Top 56%
0.292DataRank
Top 56%6 citations

Andreas Bueckle, Bruce W. Herr, Leonard E. Cross, Ellen M. Quardokus, Elizabeth G. Record +10 more

A general strategy for generating expert-guided, simplified views of ontologies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.13.628309
N/A
0.269DataRank · unranked
5 citations

Aleix Puig-Barbe, Ellen M. Quardokus, James P. Balhoff, Jasmine Belfiore, Nana-Jane Chipampe +10 more

Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph

Scientific Data(2025)10.1038/s41597-025-05183-6
Top 61%
0.241DataRank
Top 61%4 citations

Bruce W. Herr, Josef Hardi, Ellen M. Quardokus, Mark A. Musen, Katy Börner +1 more

Anatomical structures, cell types, and biomarkers of the healthy human blood vasculature

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.28.482302
Top 70%
0.165DataRank
Top 70%2 citations

Sujin Lee, Rajeev Malhotra, Marc K. Halushka, Ellen M. Quardokus, Bruce W. Herr +3 more

cell type annotations for popular Vote (popV), v1.3

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm773.mxqx.874
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe, Ellen M. Quardokus

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008451
N/A
0DataRank · unranked
75 citations

Josua O. Aponte-Serrano, Juliano F. Gianlupi, Samuel Heaps, Kira Breithaupt, Lutz Brusch +6 more

Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Tables to 2D Functional Tissue Unit (FTU) Reference Object Library Crosswalk, v1.6

Open MIND(2025)10.48539/hbm799.hqjq.466
Top 100%
0DataRank
Top 100%0 citations

Ellen M. Quardokus, Supriya Bidanta

Synthesis of 9-Dechlorochrysophaentin A Enables Studies Revealing Bacterial Cell Wall Biosynthesis Inhibition Phenotype in B. subtilis

Journal of the American Chemical Society(2020)10.1021/jacs.0c04917
N/A
0DataRank · unranked
10 citations

Yen‐Pang Hsu, Ellen M. Quardokus, Gengxiang Zhao, Carole A. Bewley, Michael S. VanNieuwenhze +2 more

A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.27.064139
N/A
0DataRank · unranked
16 citations

Josua O. Aponte-Serrano, Juliano Ferrari Gianlupi, Samuel Heaps, Kira Breithaupt, Lutz Brusch +6 more

Cadherin-11, Sparc-related modular calcium binding protein-2, and Pigment epithelium-derived factor are promising non-invasive biomarkers of kidney fibrosis

Kidney International(2021)10.1016/j.kint.2021.04.037
N/A
0DataRank · unranked
47 citations

Mia R. Colona, Bryan Kestenbaum, Leonidas G. Alexopoulos, Ragnar Pálsson, Anand Srivastava +90 more

A user-friendly tool for cloud-based whole slide image segmentation with examples from renal histopathology

Communications Medicine(2022)10.1038/s43856-022-00138-z
N/A
0DataRank · unranked
49 citations

David Manthey, Jan U. Becker, Brandon Ginley, Katharina Moos, Jonathan E. Zuckerman +93 more

Multi-Scalar Data Integration Links Glomerular Angiopoietin-Tie Signaling Pathway Activation With Progression of Diabetic Kidney Disease

Diabetes(2022)10.2337/db22-0169
N/A
0DataRank · unranked
17 citations

Viji Nair, Yiyang Zhao, Dong‐Yuan Chang, Christine P. Limonte, Nisha Bansal +92 more

Anatomical Structures Object Library of the Human Reference Atlas

The FASEB Journal(2022)10.1096/fasebj.2022.36.s1.r2809
Top 100%
0DataRank
Top 100%0 citations

Ellen M. Quardokus, Kristen Browne, Katy Börner

Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging

Nature Methods(2023)10.1038/s41592-023-01846-7
N/A
0DataRank · unranked
45 citations

Diane C. Saunders, Elizabeth McDonough, John W. Hickey, Christopher Werlein, Christine Surrette +33 more

Mapping the lymphatic system across body scales and expertise domains: A report from the 2021 National Heart, Lung, and Blood Institute workshop at the Boston Lymphatic Symposium

Frontiers in Physiology(2023)10.3389/fphys.2023.1099403
N/A
0DataRank · unranked
19 citations

Katy Börner, Elliot L. Chaikof, Michael Detmar, Maija Hollmén, Jeffrey J. Iliff +12 more

Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.22.630006
Top 100%
0DataRank
Top 100%0 citations

Bruce W. Herr, Josef Hardi, Ellen M. Quardokus, Mark A. Musen, Katy Börner +1 more

Exploring endothelial cell environments across organs in spatially resolved omics data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.23.678129
N/A
0DataRank · unranked
3 citations

Jodie Jepson, Roy Chen, Elizabeth Maier, Bruce W. Herr, Aleix Puig-Barbe +24 more

cell type annotations for Azimuth, v1.3

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm294.fplh.558
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe, Nicole A. Vasilevsky, Ellen M. Quardokus

Anatomical Structures, Cell Types and Biomarkers (ASCT+B) Tables to 3D Reference Object Library Crosswalk, v1.9

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm652.vrpb.452
Top 100%
0DataRank
Top 100%0 citations

Schlehlein, Heidi, Bruce W. Herr, Katy Börner, Ellen M. Quardokus

Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Mouth, v1.1

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm632.gtvr.643
Top 100%
0DataRank
Top 100%0 citations

Ellen M. Quardokus, Kevin M. Byrd

cell type annotations for CellTypist, v1.2

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm358.ctvq.639
Top 100%
0DataRank
Top 100%0 citations

Aleix Puig-Barbe, Ellen M. Quardokus