Daniel Zuckerman

ORCID: 0000-0001-7662-2031

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

ITC Datasets and Bayesian Posteriors: IC3 with LC8 and TcTex

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.15884002

Top 100%

0DataRank

Top 100%0 citations

Lisa Otten, Daniel Zuckerman, Elisar Barbar, Douglas R. Walker

Papers

Driven by 43 papers — median percentile 0. Top paper: “Vascular K ATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides”.

Vascular K ATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2109441118

N/A

1.4DataRank · unranked

52 citations

Zhongying Yang, Camden Driggers, Bruce L. Patton, Barmak Mostofian, John D. Russo +3 more

#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol

The International Journal of High Performance Computing Applications(2022)10.1177/10943420221128233

N/A

0.689DataRank · unranked

98 citations

Lorenzo Casalino, Fiona L. Kearns, Mia A. Rosenfeld, Nicholas Wauer, Surl-Hee Ahn +47 more

A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]

Living Journal of Computational Molecular Science(2023)10.33011/livecoms.5.1.1655

N/A

0.664DataRank · unranked

15 citations

Jeremy M. G. Leung, John D. Russo, She Zhang, Jeffrey P. Thompson, Ali Sinan Saglam +17 more

#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.12.468428

N/A

0.505DataRank · unranked

28 citations

Lorenzo Casalino, Fiona L. Kearns, Mia A. Rosenfeld, Nicholas Wauer, Surl-Hee Ahn +47 more

Quantifying cooperative multisite binding in the hub protein LC8 through Bayesian inference

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011059

N/A

0.425DataRank · unranked

16 citations

August George, Elisar Barbar, Daniel Zuckerman, Aidan Estelle

Weighted Ensemble Simulation: Advances in Methods, Software, and Applications

Wiley Interdisciplinary Reviews Computational Molecular Science(2025)10.1002/wcms.70055

N/A

0.292DataRank · unranked

6 citations

Daniel Zuckerman, Lillian T. Chong

Quantifying cooperative multisite binding in the hub protein LC8 through Bayesian inference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.29.498022

N/A

0.269DataRank · unranked

5 citations

August George, Elisar Barbar, Daniel Zuckerman, Aidan Estelle

Combining datasets for Bayesian inference

OSF Preprints (OSF Preprints)(2025)10.31219/osf.io/hv7yd_v2

N/A

0.165DataRank · unranked

2 citations

Lisa Otten, Daniel Zuckerman

WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.05.471280

N/A

0.104DataRank · unranked

1 citations

She Zhang, Jeremy M. G. Leung, Anthony T. Bogetti, Jeffrey P. Thompson, Alex J. DeGrave +11 more

What Markov State Models Can and Cannot Do: Correlation versus Path-Based Observables in Protein-Folding Models

Journal of Chemical Theory and Computation(2021)10.1021/acs.jctc.0c01154

N/A

0DataRank · unranked

69 citations

Rafal Wiewiora, Chris Wehmeyer, Frank Noé, John D. Chodera, Daniel Zuckerman +1 more

Connexin 46 and connexin 50 gap junction channel properties are shaped by structural and dynamic features of their N‐terminal domains

The Journal of Physiology(2021)10.1113/jp281339

N/A

0DataRank · unranked

41 citations

Bassam G. Haddad, Umair Khan, Honghong Chen, Mena Atalla, Ze Zhang +4 more

Morphodynamical cell state description via live-cell imaging trajectory embedding

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.07.463498

N/A

0DataRank · unranked

3 citations

Sean M. Gross, Young Hwan Chang, Laura M. Heiser, Daniel Zuckerman, Jeremy Copperman

Vascular K ATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.15.444267

N/A

0DataRank · unranked

1 citations

Zhongying Yang, Bruce L. Patton, Barmak Mostofian, John D. Russo, Daniel Zuckerman +2 more

Weighted ensemble: Recent mathematical developments

The Journal of Chemical Physics(2022)10.1063/5.0110873

N/A

0DataRank · unranked

22 citations

Jeremy Copperman, Gideon Simpson, Robert J. Webber, Daniel Zuckerman, David Aristoff

Ligand-mediated Structural Dynamics of a Mammalian Pancreatic KATP Channel

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167789

N/A

0DataRank · unranked

30 citations

Camden Driggers, Barmak Mostofian, John D. Russo, Bruce L. Patton, Daniel Zuckerman +2 more

A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v0.1]

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.04.510803

N/A

0DataRank · unranked

4 citations

Jeremy M. G. Leung, John D. Russo, She Zhang, Jeffrey P. Thompson, Ali Sinan Saglam +10 more

Maximum Likelihood vs. Bayesian estimation of uncertainty

RePEc: Research Papers in Economics(2022)10.31219/osf.io/ajuvf

N/A

0DataRank · unranked

4 citations

Daniel Zuckerman

Continuum dynamics and statistical correction of compositional heterogeneity in multivalent IDP oligomers resolved by single-particle EM

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167520

N/A

0DataRank · unranked

0 citations

Russell McFarland, Aidan Estelle, Jesse Howe, Elisar Barbar, Steve Reichow +2 more

Ligand-mediated structural dynamics of a mammalian pancreatic K ATP channel

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.02.482692

N/A

0DataRank · unranked

0 citations

Camden Driggers, Barmak Mostofian, John D. Russo, Bruce L. Patton, Daniel Zuckerman +2 more

Morphodynamical cell-state description via live-cell imaging trajectory embedding

Research Square(2022)10.21203/rs.3.rs-2347203/v1

N/A

0DataRank · unranked

0 citations

Sean M. Gross, Young Hwan Chang, Laura M. Heiser, Daniel Zuckerman, Jeremy Copperman

Investigating LC8 Cooperativity via Molecular Dynamics

RePEc: Research Papers in Economics(2022)10.31219/osf.io/fkpe5

N/A

0DataRank · unranked

0 citations

Elisar Barbar, Daniel Zuckerman, Shelby Santos

Morphodynamical cell state description via live-cell imaging trajectory embedding

Communications Biology(2023)10.1038/s42003-023-04837-8

N/A

0DataRank · unranked

24 citations

Sean M. Gross, Young Hwan Chang, Laura M. Heiser, Daniel Zuckerman, Jeremy Copperman

Combining datasets for Bayesian inference

RePEc: Research Papers in Economics(2023)10.31219/osf.io/hv7yd

N/A

0DataRank · unranked

3 citations

Daniel Zuckerman

Bayesian Mechanistic Inference, Statistical Mechanics, and a New Era for Monte Carlo

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00014

N/A

0DataRank · unranked

10 citations

August George, Daniel Zuckerman

Single-cell morphodynamical trajectories enable prediction of gene expression accompanying cell state change

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.18.576248

N/A

0DataRank · unranked

4 citations

Ian C. McLean, Sean M. Gross, Jalim Singh, Vaibhav Murthy, Young Hwan Chang +4 more

Bayesian mechanistic inference, statistical mechanics, and a new era for Monte Carlo

ChemRxiv(2024)10.26434/chemrxiv-2024-50274

N/A

0DataRank · unranked

0 citations

August George, Daniel Zuckerman

Design of facilitated dissociation enables timing of cytokine signalling

Nature(2025)10.1038/s41586-025-09549-z

N/A

0DataRank · unranked

12 citations

Christoph Pollmann, Yang Zhao, Mauriz A. Lichtenstein, Mark D. Jackson, Maxx H. Tessmer +17 more

Weighted Ensemble Simulation: Advances in methods, software, and applications

ChemRxiv(2025)10.26434/chemrxiv-2025-jtppp

N/A

0DataRank · unranked

1 citations

Daniel Zuckerman, Lillian T. Chong

Improving parameter inference by resolving Bayesian prior ambiguity via multi-dataset analysis: Application to isothermal titration calorimetry

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.09.663792

N/A

0DataRank · unranked

1 citations

Douglas R. Walker, Elisar Barbar, Daniel Zuckerman, Lisa Otten

Walking the Tightrope: Balancing Opposing Cooperativities as an Operating Principle in Dynein Assembly

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.14.664506

N/A

0DataRank · unranked

0 citations

Lisa Otten, Daniel Zuckerman, Elisar Barbar, Douglas R. Walker

Molecular dynamics (Chapter 3)

(2025)10.31219/osf.io/7nse6_v2

N/A

0DataRank · unranked

0 citations

Daniel Zuckerman

Reducing Weighted Ensemble Variance With Optimal Trajectory Management

arXiv (Cornell University)(2025)10.48550/arxiv.2504.21663

N/A

0DataRank · unranked

0 citations

John D. Russo, Mats Johnson, Jeremy Copperman, Jeffrey P. Thompson, David N. LeBard +5 more

ITC Datasets and Bayesian Posteriors: IC3 with LC8 and TcTex

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.15884002

Top 100%

0DataRank

Top 100%0 citations

Lisa Otten, Daniel Zuckerman, Elisar Barbar, Douglas R. Walker

A very simple introduction to Bayesian statistics: From coin flips to insight

RePEc: Research Papers in Economics10.31219/osf.io/nzwk4

N/A

0DataRank · unranked

0 citations

Daniel Zuckerman

ITC Datasets and Bayesian Posteriors: IC3 with LC8 and TcTex

Zenodo (CERN European Organization for Nuclear Research)(2025)10.5281/zenodo.15884003

Top 100%

0DataRank

Top 100%0 citations

Lisa Otten, Daniel Zuckerman, Elisar Barbar, Douglas R. Walker

Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 Å

Nature Communications(2020)10.1038/s41467-020-18120-5

N/A

0DataRank · unranked

126 citations

Bassam G. Haddad, Kimberly A. Dolan, Janette B. Myers, C.C. Yoshioka, Jeremy Copperman +3 more

A systems-biology approach to molecular machines: Exploration of alternative transporter mechanisms

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007884

N/A

0DataRank · unranked

19 citations

Paola Bisignano, John M. Rosenberg, Michael Grabe, Daniel Zuckerman, August George

A kinetic mechanism for enhanced selectivity of membrane transport

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007789

N/A

0DataRank · unranked

23 citations

Michael A. Lee, August George, Daniel Zuckerman, Michael Grabe, John M. Rosenberg +1 more

Should Virus Capsids Assemble Perfectly? Theory and Observation of Defects

Biophysical Journal(2020)10.1016/j.bpj.2020.09.021

N/A

0DataRank · unranked

6 citations

James F. Conway, Daniel Zuckerman, Justin Spiriti

Optimizing Weighted Ensemble Sampling of Steady States

Multiscale Modeling and Simulation(2020)10.1137/18m1212100

N/A

0DataRank · unranked

5 citations

Daniel Zuckerman, David Aristoff

Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 Å

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.14.036384

N/A

0DataRank · unranked

9 citations

Bassam G. Haddad, Kimberly A. Dolan, Janette B. Myers, C.C. Yoshioka, Jeremy Copperman +3 more

What Markov state models can and cannot do: Correlation versus path-based observables in protein folding models

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.09.374496

N/A

0DataRank · unranked

7 citations

Rafal Wiewiora, Chris Wehmeyer, Frank Noé, John D. Chodera, Daniel Zuckerman +1 more

Connexin 46 and connexin 50 gap junction channel open stability and unitary conductance are shaped by structural and dynamic features of their N-terminal domains

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.01.182584

N/A

0DataRank · unranked

0 citations

Bassam G. Haddad, Umair Khan, Honghong Chen, Mena Atalla, Ze Zhang +4 more

Daniel Zuckerman

Indexed papers

Top data-sharing exemplar

Papers