Degui Zhi

The University of Texas Health Science Center

Also affiliated with The University of Texas Health Science Center at Houston

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.627Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Explainable artificial intelligence and domain adaptation for predicting HIV infection with graph neural networks

Annals of Medicine(2024)10.1080/07853890.2024.2407063

Top 50%

0.352DataRank

Top 50%7 citations

Jingcheng Du, Yang Xiang, Xinyue Hu, Jingna Feng, Xi Luo +5 more

Papers

Driven by 58 papers — median percentile 46. Top paper: “Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries”.

Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

Nature Communications(2018)10.1038/s41467-018-04668-w

N/A

3.7DataRank · unranked

109 citations

Sanni Ruotsalainen, Robert E. Handsaker, Maris Alver, Jonathan M. Bloom, Timothy Poterba +442 more

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching

BMC Medical Genomics(2020)10.1186/s12920-020-0715-0

N/A

1.3DataRank · unranked

41 citations

Xiaoqian Jiang, Haixu Tang, Xiaofeng Wang, Tyler Bath, Diyue Bu +7 more

Discovery and fine-mapping of height loci via high-density imputation of GWASs in individuals of African ancestry

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.02.011

N/A

1.1DataRank · unranked

34 citations

Anne E. Justice, Kristin L. Young, Eirini Marouli, Xinruo Zhang, Rebecca S. Fine +220 more

Unsupervised deep representation learning enables phenotype discovery for genetic association studies of brain imaging

Communications Biology(2024)10.1038/s42003-024-06096-7

N/A

0.561DataRank · unranked

41 citations

Ziqian Xie, Hao Yuan, Sheikh Muhammad Saiful Islam, Yaochen Xie, Wei He +10 more

iGWAS: Image-based genome-wide association of self-supervised deep phenotyping of retina fundus images

PLoS Genetics(2024)10.1371/journal.pgen.1011273

N/A

0.457DataRank · unranked

20 citations

T. Zhang, Sangbae Kim, Jiaxiong Lu, Wanheng Zhang, Cheng‐Hui Lin +9 more

Foundation Models, Generative AI, and Large Language Models

CIN Computers Informatics Nursing(2024)10.1097/cin.0000000000001149

N/A

0.406DataRank · unranked

14 citations

Kathleen McGrow, Degui Zhi, Laila Rasmy, Angela Ross

New phenotype discovery method by unsupervised deep representation learning empowers genetic association studies of brain imaging

medRxiv(2022)10.1101/2022.12.10.22283302

N/A

0.373DataRank · unranked

11 citations

Ziqian Xie, Hao Yuan, Sheikh Muhammad Saiful Islam, Wanheng Zhang, Assaf Gottlieb +8 more

Explainable artificial intelligence and domain adaptation for predicting HIV infection with graph neural networks

Annals of Medicine(2024)10.1080/07853890.2024.2407063

Top 50%

0.352DataRank

Top 50%7 citations

Jingcheng Du, Yang Xiang, Xinyue Hu, Jingna Feng, Xi Luo +5 more

Publisher Correction: Deep coverage whole genome sequences and plasma lipoprotein(a) in individuals of European and African ancestries

Nature Communications(2020)10.1038/s41467-020-15236-6

Top 57%

0.275DataRank

Top 57%2 citations

Sanni Ruotsalainen, Robert E. Handsaker, Maris Alver, Jonathan M. Bloom, Timothy Poterba +442 more

Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in UK Biobank

eLife(2024)10.7554/elife.81698

N/A

0.241DataRank · unranked

4 citations

Degui Zhi, Shaojie Zhang, Ardalan Naseri

Minimal positional substring cover is a haplotype threading alternative to Li and Stephens model

Genome Research(2023)10.1101/gr.277673.123

N/A

0.208DataRank · unranked

3 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci

UNC Libraries(2020)10.17615/bzpx-ja61

N/A

0DataRank · unranked

0 citations

James S. Pankow, Megan L. Grove, Yi‐Hui Zhou, Åsa K. Hedman, Marguerite R. Irvin +19 more

Personalized genealogical history of UK individuals inferred from biobank-scale IBD segments

BMC Biology(2021)10.1186/s12915-021-00964-y

N/A

0DataRank · unranked

18 citations

Kecong Tang, Xin Geng, Junjie Shi, Jing Zhang, Pramesh Shakya +4 more

Association of Sickle Cell Trait With Incidence of Coronary Heart Disease Among African American Individuals

JAMA Network Open(2021)10.1001/jamanetworkopen.2020.30435

N/A

0DataRank · unranked

15 citations

Nora Franceschini, Samantha R. Seals, Marguerite R. Irvin, Ninad S. Chaudhary, Rakhi P. Naik +32 more

RAFFI: Accurate and fast familial relationship inference in large scale biobank studies using RaPID

PLoS Genetics(2021)10.1371/journal.pgen.1009315

N/A

0DataRank · unranked

14 citations

Junjie Shi, Xihong Lin, Shaojie Zhang, Degui Zhi, Ardalan Naseri

d-PBWT: dynamic positional Burrows–Wheeler transform

Bioinformatics(2021)10.1093/bioinformatics/btab117

N/A

0DataRank · unranked

19 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

FiMAP: A Fast Identity-by-Descent Mapping Test for Biobank-scale Cohorts

medRxiv(2021)10.1101/2021.06.30.21259773

N/A

0DataRank · unranked

2 citations

Ardalan Naseri, Degui Zhi, Han Chen

Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts

GigaScience(2022)10.1093/gigascience/giac111

N/A

0DataRank · unranked

25 citations

Ardalan Naseri, Yuan Wei, Shaojie Zhang, Degui Zhi, Kecong Tang

Toward a standard formal semantic representation of the model card report

BMC Bioinformatics(2022)10.1186/s12859-022-04797-6

N/A

0DataRank · unranked

18 citations

Licong Cui, Degui Zhi, Kirk Roberts, Xiaoqian Jiang, Fang Li +3 more

Syllable-PBWT for space-efficient haplotype long-match query

Bioinformatics(2022)10.1093/bioinformatics/btac734

N/A

0DataRank · unranked

11 citations

Ardalan Naseri, Shaojie Zhang, Degui Zhi, Victor Wang

P-smoother: efficient PBWT smoothing of large haplotype panels

Bioinformatics Advances(2022)10.1093/bioadv/vbac045

N/A

0DataRank · unranked

5 citations

Ardalan Naseri, Victor Wang, Pramesh Shakya, Shaojie Zhang, Degui Zhi +1 more

iGWAS: image-based genome-wide association of self-supervised deep phenotyping of human medical images

medRxiv(2022)10.1101/2022.05.26.22275626

N/A

0DataRank · unranked

10 citations

Tao Zhang, Sangbae Kim, Jiaxiong Lu, Wanheng Zhang, Cheng‐Hui Lin +9 more

Syllable-PBWT for space-efficient haplotype long-match query

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.31.478234

N/A

0DataRank · unranked

0 citations

Ardalan Naseri, Shaojie Zhang, Degui Zhi, Victor Wang

RaPID-Query for Fast Identity by Descent Search and Genealogical Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.03.478907

N/A

0DataRank · unranked

0 citations

Ardalan Naseri, Degui Zhi, Shaojie Zhang, Yuan Wei

mcPBWT: Space-efficient Multi-column PBWT Scanning Algorithm for Composite Haplotype Matching

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478879

N/A

0DataRank · unranked

0 citations

Ardalan Naseri, Degui Zhi, Shaojie Zhang, Pramesh Shakya

FiMAP: A fast identity-by-descent mapping test for biobank-scale cohorts

PLoS Genetics(2023)10.1371/journal.pgen.1011057

N/A

0DataRank · unranked

15 citations

Ardalan Naseri, Degui Zhi, Han Chen

Prediction of Brain Metastases Development in Patients With Lung Cancer by Explainable Artificial Intelligence From Electronic Health Records

JCO Clinical Cancer Informatics(2023)10.1200/cci.22.00141

N/A

0DataRank · unranked

9 citations

Rongbin Li, Yujia Zhou, Laila Rasmy, Degui Zhi, Ping Zhu +6 more

RaPID-Query for fast identity by descent search and genealogical analysis

Bioinformatics(2023)10.1093/bioinformatics/btad312

N/A

0DataRank · unranked

4 citations

Ardalan Naseri, Degui Zhi, Shaojie Zhang, Yuan Wei

Fast inference of genetic recombination rates in biobank scale data

Genome Research(2023)10.1101/gr.277676.123

N/A

0DataRank · unranked

5 citations

William Yue, Shaojie Zhang, Degui Zhi, Ardalan Naseri

Fast and accurate local ancestry inference with Recomb-Mix

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.17.567650

N/A

0DataRank · unranked

4 citations

Degui Zhi, Shaojie Zhang, Yuan Wei

Genetic InfoMax: Exploring Mutual Information Maximization in High-Dimensional Imaging Genetics Studies

PubMed(2023)10.48550/arxiv.2309.15132

N/A

0DataRank · unranked

3 citations

Ziqian Xie, Sheikh Muhammad Saiful Islam, Degui Zhi, Shuiwang Ji, Yaochen Xie

Minimal Positional Substring Cover: A Haplotype Threading Alternative to Li & Stephens Model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.522803

N/A

0DataRank · unranked

0 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

FastRecomb: Fast inference of genetic recombination rates in biobank scale data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.09.523304

N/A

0DataRank · unranked

0 citations

William Yue, Shaojie Zhang, Degui Zhi, Ardalan Naseri

Deep learning model for personalized prediction of positive MRSA culture using time-series electronic health records

Nature Communications(2024)10.1038/s41467-024-46211-0

N/A

0DataRank · unranked

44 citations

Laila Rasmy, Bingyu Mao, Bijun S. Kannadath, Ziqian Xie, Degui Zhi +1 more

Personalized Composite Dosimetric Score–Based Machine Learning Model of Severe Radiation-Induced Lymphopenia Among Patients With Esophageal Cancer

International Journal of Radiation Oncology*Biology*Physics(2024)10.1016/j.ijrobp.2024.05.018

N/A

0DataRank · unranked

7 citations

Cong Zhu, Brian P. Hobbs, Yiqing Chen, Peter S.N. van Rossum, Clemens Grassberger +4 more

Sickle Cell Trait and the Risk of ESRD in Blacks

UNC Libraries(2024)10.17615/x5m2-ka54

N/A

0DataRank · unranked

2 citations

Rakhi P. Naik, Degui Zhi, Cheryl A. Winkler, James Wilson, Mary Cushman +11 more

Clinical Translation of a Deep Learning Model of Radiation-Induced Lymphopenia for Esophageal Cancer

International Journal of Particle Therapy(2024)10.1016/j.ijpt.2024.100624

N/A

0DataRank · unranked

1 citations

Radhe Mohan, Yan Chu, Xiaochun Wang, Peter S.N. van Rossum, Yiqing Chen +8 more

Association of Sickle Cell Trait With Incidence of Coronary Heart Disease Among African American Individuals

UNC Libraries(2024)10.17615/z7rf-jx22

N/A

0DataRank · unranked

0 citations

Abhijit V. Kshirsagar, Mary Cushman, Suma Konety, Victoria Howard, Neil A. Zakai +32 more

A multi-ethnic epigenome-wide association study of leukocyte DNA methylation and blood lipids

UNC Libraries(2024)10.17615/6p9v-ms63

N/A

0DataRank · unranked

0 citations

Themistocles L. Assimes, Alan R. Shuldiner, Min-A Jhun, W. Chen, D. Absher +59 more

Prompting Large Language Models for Clinical Temporal Relation Extraction

arXiv (Cornell University)(2024)10.48550/arxiv.2412.04512

N/A

0DataRank · unranked

0 citations

Laila Rasmy, Haifang Li, Jianfu Li, Zenan Sun, Evan Yu +3 more

Linking DNA methylation in brain regions to Alzheimer’s disease risk: a Mendelian randomization study

Human Molecular Genetics(2025)10.1093/hmg/ddaf053

N/A

0DataRank · unranked

3 citations

Jingjing Zhu, Shuai Liu, Dan Zhou, Quan Long, Chong Wu +13 more

iGTP: learning interpretable cellular embedding for inferring biological mechanisms underlying single-cell transcriptomics

Briefings in Bioinformatics(2025)10.1093/bib/bbaf296

N/A

0DataRank · unranked

1 citations

Kai Zhang, Yan Chu, Lishan Yu, Xiaoyang Li, Na Hu +8 more

Recomb-Mix: fast and accurate local ancestry inference

Bioinformatics(2025)10.1093/bioinformatics/btaf227

N/A

0DataRank · unranked

1 citations

Degui Zhi, Shaojie Zhang, Yuan Wei

GWAS for Periodontitis Phenotypes Using Multi-Ancestry All of Us Research Platform

medRxiv(2025)10.1101/2025.09.07.25335133

N/A

0DataRank · unranked

1 citations

Ardalan Naseri, Chun‐Teh Lee, Junichi Iwata, Yixuan He, Oluwabunmi Tokede +4 more

Haplotype Matching with GBWT for Pangenome Graphs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.03.634410

N/A

0DataRank · unranked

0 citations

Seba Villalobos, Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

Dynamic µ -PBWT: Dynamic Run-length Compressed PBWT for Biobank Scale Data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.04.636479

N/A

0DataRank · unranked

0 citations

Ahsan Sanaullah, Degui Zhi, Shaojie Zhang, Pramesh Shakya

Haplotype-based Parallel PBWT for Biobank Scale Data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.04.636317

N/A

0DataRank · unranked

0 citations

Ahsan Sanaullah, Degui Zhi, Shaojie Zhang, Kecong Tang

An Efficient Data Structure and Algorithm for Long-Match Query in Run-Length Compressed BWT

PubMed(2025)10.4230/lipics.wabi.2025.17

N/A

0DataRank · unranked

0 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

FRAME: fast reference-based ancestry makeup estimation tool

Bioinformatics Advances(2026)10.1093/bioadv/vbag006

N/A

0DataRank · unranked

0 citations

Ardalan Naseri, Degui Zhi, Shaojie Zhang, Pramesh Shakya

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Journal of Medical Internet Research(2020)10.2196/16981

N/A

0DataRank · unranked

57 citations

Hangyu Ji, Yujia Zhou, Fang Li, Jingcheng Du, Laila Rasmy +7 more

Vasopressor treatment and mortality following nontraumatic subarachnoid hemorrhage: a nationwide electronic health record analysis

Neurosurgical FOCUS(2020)10.3171/2020.2.focus191002

N/A

0DataRank · unranked

24 citations

Vahed Maroufy, Laila Rasmy, Derek Brown, Duo Yu, Hai Feng Zhu +14 more

Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa180

N/A

0DataRank · unranked

33 citations

Firat Tiryaki, Yujia Zhou, Yang Xiang, Cui Tao, Hua Xu +2 more

Association of Body Mass Index with DNA Methylation and Gene Expression in Blood Cells and Relations to Cardiometabolic Disease: A Mendelian Randomization Approach

UNC Libraries(2020)10.17615/9kkt-zw63

N/A

0DataRank · unranked

2 citations

Weihua Guan, Caroline S. Fox, Erica L. Kleinbrink, Åsa K. Hedman, Yao Chen +44 more

Meta-Align: A Novel HMM-based Algorithm for Pairwise Alignment of Error-Prone Sequencing Reads

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.11.087676

N/A

0DataRank · unranked

4 citations

Shravan Kumar, Degui Zhi, Steven E. Brenner, Kentaro Tomii

d-PBWT: dynamic positional Burrows-Wheeler transform

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.14.906487

N/A

0DataRank · unranked

3 citations

Degui Zhi, Shaojie Zhang, Ahsan Sanaullah

Genome-wide admixture and association study of subclinical atherosclerosis in the Women’s Interagency HIV Study (WIHS)

UNC Libraries(2020)10.17615/fc00-3m12

N/A

0DataRank · unranked

0 citations

Qibin Qi, Howard W. Wiener, Edgar T. Overton, Ighovwerha Ofotokun, Jason Lazar +13 more

Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia

UNC Libraries(2020)10.17615/2qt3-6p69

N/A

0DataRank · unranked

0 citations

Moara Machado, Cristine Allmer, Yolanda Benavente, Jennifer Turner, John J. Spinelli +95 more

Genetically predicted longer telomere length is associated with increased risk of B-cell lymphoma subtypes

UNC Libraries(2020)10.17615/y5gv-3561

N/A

0DataRank · unranked

0 citations

Anneclaire J. De Roos, Brian K. Link, Anne J. Novak, Yuanqing Ye, Mitchell J. Machiela +95 more

Degui Zhi

Indexed papers

Top data-sharing exemplar

Papers