Jian Wang

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 44 papers. Top paper: “Mapping allosteric communications within individual proteins”.

Mapping allosteric communications within individual proteins

Nature Communications(2020)10.1038/s41467-020-17618-2

N/A

0DataRank · unranked

206 citations

Abha Jain, Leanna R. McDonald, Craig W. Gambogi, Andrew L. Lee, Nikolay V. Dokholyan +1 more

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

RNA(2020)10.1261/rna.075341.120

N/A

0DataRank · unranked

173 citations

Ryszard W. Adamiak, Maciej Antczak, M. Boniecki, Janusz M. Bujnicki, Shi‐Jie Chen +45 more

Various miRNAs compensate the role of miR-122 on HCV replication

PLoS Pathogens(2020)10.1371/journal.ppat.1008308

N/A

0DataRank · unranked

17 citations

Takasuke Fukuhara, Songling Li, Jian Wang, Asuka Sato, Takuma Izumi +7 more

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

UNC Libraries(2020)10.17615/rh9e-gx23

N/A

0DataRank · unranked

5 citations

Janusz M. Bujnicki, Feng Ding, Greggory M. Rice, Wipapat Kladwang, J.J. Trausch +41 more

Prefusion spike protein stabilization through computational mutagenesis

Proteins Structure Function and Bioinformatics(2020)10.1002/prot.26025

N/A

0DataRank · unranked

5 citations

Jian Wang, Nikolay V. Dokholyan, Dong Yan Zhang

Prefusion spike protein stabilization through computational mutagenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.17.157081

N/A

0DataRank · unranked

0 citations

Jian Wang, Nikolay V. Dokholyan, Dong Yan Zhang

Modifications to the Framework Regions Eliminate Chimeric Antigen Receptor Tonic Signaling

Cancer Immunology Research(2021)10.1158/2326-6066.cir-20-0451

N/A

0DataRank · unranked

78 citations

Giovanni Fucà, Jian Wang, Venkat R. Chirasani, Zhiyuan Yao, Elena Dukhovlinova +14 more

Direct Mapping of Higher-Order RNA Interactions by SHAPE-JuMP

Biochemistry(2021)10.1021/acs.biochem.1c00270

N/A

0DataRank · unranked

37 citations

Catherine A. Giannetti, Gillian Houlihan, Matthew J. Smola, Greggory M. Rice, Jian Wang +5 more

GPU-Accelerated Flexible Molecular Docking

The Journal of Physical Chemistry B(2021)10.1021/acs.jpcb.0c09051

N/A

0DataRank · unranked

34 citations

Jian Wang, Huaipan Jiang, Yilin Feng, Mehrdad Mahdavi, Kamesh Madduri +3 more

Mechanical Counterbalance of Kinesin and Dynein Motors in a Microtubular Network Regulates Cell Mechanics, 3D Architecture, and Mechanosensing

ACS Nano(2021)10.1021/acsnano.1c04435

N/A

0DataRank · unranked

22 citations

Alexis Manning, Chynna Smith, James B. Hayes, Dylan T. Burnette, Jian Wang +5 more

Development of antisense RNA-mediated quantifiable inhibition for metabolic regulation

Metabolic Engineering Communications(2021)10.1016/j.mec.2021.e00168

N/A

0DataRank · unranked

8 citations

Yan Zhang, Jian Wang, Yaping Yang, Yajun Yan, Ruihua Zhang

GM1 mediates the formation and maintenance of cytotoxic Aβ oligomers

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.22.453392

N/A

0DataRank · unranked

0 citations

Jian Wang, Rebecca M. Fleeman, Madison K. Kuhn, Matthew T. Swulius, Elizabeth A. Proctor +2 more

AlphaFold illuminates half of the dark human proteins

Current Opinion in Structural Biology(2022)10.1016/j.sbi.2022.102372

N/A

0DataRank · unranked

91 citations

Joel Berendzen, Amy O. Stevens, Yi He, Jian Wang, Nikolay V. Dokholyan +2 more

Predicting Protein–Ligand Docking Structure with Graph Neural Network

Journal of Chemical Information and Modeling(2022)10.1021/acs.jcim.2c00127

N/A

0DataRank · unranked

70 citations

Jian Wang, Weilin Cong, Yihe Huang, Morteza Ramezani, Anup Sarma +4 more

Anhydrous Nucleic Acid Nanoparticles for Storage and Handling at Broad Range of Temperatures

Small(2022)10.1002/smll.202104814

N/A

0DataRank · unranked

25 citations

Morgan Chandler, Justin R. Halman, Damian Beasock, Adam B. Fessler, Riley Q. McKeough +9 more

Exploring and engineering PAM-diverse Streptococci Cas9 for PAM-directed bifunctional and titratable gene control in bacteria

Metabolic Engineering(2022)10.1016/j.ymben.2022.10.005

N/A

0DataRank · unranked

16 citations

Yuxi Teng, Xinyu Gong, Jianli Zhang, Yifei Wu, Lei Lou +4 more

Whole proteome mapping of compound-protein interactions

Current Research in Chemical Biology(2022)10.1016/j.crchbi.2022.100035

N/A

0DataRank · unranked

13 citations

Jian Wang, Congzhou M. Sha, Wesley M. Raup‐Konsavage, Kent E. Vrana, Nikolay V. Dokholyan +1 more

NeuralDock: Rapid and Conformation-Agnostic Docking of Small Molecules

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.867241

N/A

0DataRank · unranked

9 citations

Jian Wang, Nikolay V. Dokholyan, Congzhou M. Sha

Monosialotetrahexosylganglioside Promotes Early Aβ42 Oligomer Formation and Maintenance

ACS Chemical Neuroscience(2022)10.1021/acschemneuro.2c00221

N/A

0DataRank · unranked

15 citations

Jian Wang, Rebecca M. Fleeman, Madison K. Kuhn, Matthew T. Swulius, Elizabeth A. Proctor +2 more

Adaptation‐Proof SARS‐CoV‐2 Vaccine Design

Advanced Functional Materials(2022)10.1002/adfm.202206055

N/A

0DataRank · unranked

14 citations

Brianna Hnath, Brendan Rackley, Jian Wang, Abhinay Gontu, Morgan Chandler +6 more

Adaptation-proof SARS-CoV-2 vaccine design

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.17.492310

N/A

0DataRank · unranked

3 citations

Brianna Hnath, Brendan Rackley, Jian Wang, Abhinay Gontu, Morgan Chandler +6 more

Predicting 3D RNA structure from solely the nucleotide sequence using Euclidean distance neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.16.492153

N/A

0DataRank · unranked

1 citations

Jian Wang, Nikolay V. Dokholyan, Congzhou M. Sha

Predicting 3D RNA structure from the nucleotide sequence using Euclidean neural networks

Biophysical Journal(2023)10.1016/j.bpj.2023.10.011

N/A

0DataRank · unranked

18 citations

Jian Wang, Nikolay V. Dokholyan, Congzhou M. Sha

Big versus small: The impact of aggregate size in disease

Protein Science(2023)10.1002/pro.4686

N/A

0DataRank · unranked

11 citations

Jiaxing Chen, Joshua Reynolds, Esther Choi, Jian Wang, Dongyan Zhang +3 more

Differentiable rotamer sampling with molecular force fields

Briefings in Bioinformatics(2023)10.1093/bib/bbad456

N/A

0DataRank · unranked

2 citations

Jian Wang, Nikolay V. Dokholyan, Congzhou M. Sha

Septins Enable T Cell Contact Guidance via Amoeboid-Mesenchymal Switch

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.26.559597

N/A

0DataRank · unranked

2 citations

Alexis Manning, Chynna Smith, Jian Wang, Xuefei Ma, Denis Tsygankov +5 more

Differentiable Rotamer Sampling with Molecular Force Fields

arXiv (Cornell University)(2023)10.48550/arxiv.2302.11430

N/A

0DataRank · unranked

0 citations

Jian Wang, Nikolay V. Dokholyan, Congzhou M. Sha

Data from Modifications to the Framework Regions Eliminate Chimeric Antigen Receptor Tonic Signaling

(2023)10.1158/2326-6066.c.6550485

N/A

0DataRank · unranked

0 citations

Giovanni Fucà, Jian Wang, Venkat R. Chirasani, Zhiyuan Yao, Elena Dukhovlinova +14 more

Quantifying network behavior in the rat prefrontal cortex: a reproducibility crisis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.16.541018

N/A

0DataRank · unranked

0 citations

Jian Wang, Richard B. Mailman, Yang Yang, Nikolay V. Dokholyan, Congzhou M. Sha

RNA-Puzzles Round V: blind predictions of 23 RNA structures

Nature Methods(2024)10.1038/s41592-024-02543-9

N/A

0DataRank · unranked

65 citations

Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa R. H. de Aquino, Nagendar Goud Badepally +94 more

2′3′-cGAMP interactome identifies 2′3′-cGAMP/Rab18/FosB signaling in cell migration control independent of innate immunity

Science Advances(2024)10.1126/sciadv.ado7024

N/A

0DataRank · unranked

8 citations

Quentin Hahn, Le Yu, Zhichuan Zhu, Joshua A. Boyer, Jian Wang +18 more

Quantifying network behavior in the rat prefrontal cortex

Frontiers in Computational Neuroscience(2024)10.3389/fncom.2024.1293279

N/A

0DataRank · unranked

1 citations

Jian Wang, Richard B. Mailman, Yang Yang, Nikolay V. Dokholyan, Congzhou M. Sha

A Piecewise Design Approach to Engineering a Miniature ACE2 Mimic to Bind SARS-CoV-2

ACS Applied Bio Materials(2024)10.1021/acsabm.4c00222

N/A

0DataRank · unranked

3 citations

Brianna Hnath, Jian Wang, Morgan Chandler, Arnab Mukherjee, Neela H. Yennawar +4 more

Comprehensive mapping of the Interaction of levodopa and iron metabolism in Parkinson’s disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.13.612928

N/A

0DataRank · unranked

2 citations

E. Srinivasan, Xuemei Huang, Richard B. Mailman, Elizabeth A. Proctor, Nikolay V. Dokholyan +1 more

CANDI: A Web Server for Predicting Molecular Targets and Pathways of Cannabis-Based Therapeutics

Research Square(2024)10.21203/rs.3.rs-4744915/v1

N/A

0DataRank · unranked

1 citations

Jian Wang, Nikolay V. Dokholyan, E. Srinivasan

APOE regulates the transport of GM1

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.02.587789

N/A

0DataRank · unranked

0 citations

Jian Wang, Gangtong Huang, Sara Langberg, Feng Ding, Nikolay V. Dokholyan +1 more

Elevated intracellular copper induces CTR1 monomerization and prevents copper uptake

Nature Communications(2025)10.1038/s41467-025-66283-w

N/A

0DataRank · unranked

6 citations

Huanhuan Chen, Guangjie Yan, Yuteng Zhang, Wenkai Chen, Martin Dokholyan +4 more

Autonomous Nucleic Acid and Protein Nanocomputing Agents Engineered to Operate in Living Cells

ACS Nano(2025)10.1021/acsnano.4c13663

N/A

0DataRank · unranked

10 citations

Tanaya Basu Roy, Elizabeth Skelly, Morgan Chandler, Jian Wang, E. Srinivasan +4 more

Apolipoprotein E (APOE) regulates the transport of monosialotetrahexosylganglioside (GM1)

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110778

N/A

0DataRank · unranked

4 citations

Jian Wang, Gangtong Huang, Martin Dokholyan, Smaranda Willcox, Jack D. Griffith +3 more

CANDI: a web server for predicting molecular targets and pathways of cannabis-based therapeutics

Journal of Cannabis Research(2025)10.1186/s42238-025-00268-w

N/A

0DataRank · unranked

1 citations

Jian Wang, Nikolay V. Dokholyan, E. Srinivasan

Multimodal Bonds Reconstruction Towards Generative Molecular Design

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.06.652517

N/A

0DataRank · unranked

3 citations

Nikolay V. Dokholyan, Jian Wang

A Diffusion-Based Framework for Designing Molecules in Flexible Protein Pockets

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.27.656443

N/A

0DataRank · unranked

2 citations

Dong Yan Zhang, Shreshty Budakoti, Nikolay V. Dokholyan, Jian Wang

Unified Protein-Small Molecule Graph Neural Networks for Binding Site Prediction

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.03.674017

N/A

0DataRank · unranked

1 citations

Nikolay V. Dokholyan, Jian Wang

Targeting IL-1/IRAK1/4 signaling in acute myeloid leukemia stem cells following treatment and relapse

Leukemia(2025)10.1038/s41375-025-02816-y

N/A

0DataRank · unranked

0 citations

Mark W. LaMere, Hiroki Kawano, Daniel Byun, Elizabeth A. LaMere, Yu‐Chiao Chiu +12 more