Ronald Swanstrom

University of North Carolina at Chapel Hill

Also affiliated with University of Cape Town

Immunology and MicrobiologyMedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.241Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Changes in cerebrospinal fluid proteins across the spectrum of untreated and treated chronic HIV-1 infection

PLoS Pathogens(2024)10.1371/journal.ppat.1012470

Top 61%

0.241DataRank

Top 61%4 citations

Paola Cinque, Ameet Dravid, Lars Hagberg, Aylin Yilmaz, Henrik Zetterberg +11 more

Papers

Driven by 109 papers — median percentile 19. Top paper: “Changes in cerebrospinal fluid proteins across the spectrum of untreated and treated chronic HIV-1 infection”.

Changes in cerebrospinal fluid proteins across the spectrum of untreated and treated chronic HIV-1 infection

PLoS Pathogens(2024)10.1371/journal.ppat.1012470

Top 61%

0.241DataRank

Top 61%4 citations

Paola Cinque, Ameet Dravid, Lars Hagberg, Aylin Yilmaz, Henrik Zetterberg +11 more

Evolving Character of Chronic Central Nervous System HIV Infection

UCL Discovery (University College London)(2021)10.17615/9jh1-6g57

N/A

0.208DataRank · unranked

3 citations

Sarah Joseph, Julia Peterson, Magnus Gisslén, Serena Spudich, Richard H. Price +3 more

The persistent pool of HIV-1-infected cells is formed episodically during untreated infection

Journal of Virology(2024)10.1128/jvi.00979-24

N/A

0.165DataRank · unranked

2 citations

Matthew Moeser, Amy Sondgeroth, E. Spielvogel, Brian Richardson, Deelan Doolabh +13 more

Near Real-Time Identification of Recent Human Immunodeficiency Virus Transmissions, Transmitted Drug Resistance Mutations, and Transmission Networks by Multiplexed Primer ID–Next-Generation Sequencing in North Carolina

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa417

N/A

0DataRank · unranked

12 citations

Sabrina Sizemore, Matt Moeser, Scott J. Zimmerman, Erika Samoff, Victoria Mobley +13 more

Deep Sequencing Reveals Compartmentalized HIV-1 in the Semen of Men with and without Sexually Transmitted Infection-Associated Urethritis

Journal of Virology(2020)10.1128/jvi.00151-20

N/A

0DataRank · unranked

9 citations

Chase D. McCann, Irving Hoffman, Gerald Tegha, Deborah Kamwendo, Mitch Matoga +4 more

Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere

Journal of Medicinal Chemistry(2020)10.1021/acs.jmedchem.0c00529

N/A

0DataRank · unranked

7 citations

G.J. Lockbaum, M. Henes, Sook-Kyung Lee, E. Spielvogel, Desaboini Nageswara Rao +7 more

Deep Sequencing of the HIV-1 env Gene Reveals Discrete X4 Lineages and Linkage Disequilibrium between X4 and R5 Viruses in the V1/V2 and V3 Variable Regions

UNC Libraries(2020)10.17615/h3fp-b604

N/A

0DataRank · unranked

2 citations

Ronald Swanstrom, Maria M. Bednar, Shuntai Zhou, Christa Buckheit Sturdevant, Blake M. Hauser

Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations

UNC Libraries(2020)10.17615/2crb-j687

N/A

0DataRank · unranked

1 citations

Ronald Swanstrom, Corbin D. Jones, Piotr A. Mieczkowski, Shuntai Zhou

Vertical T cell immunodominance and epitope entropy determine HIV-1 escape

UNC Libraries(2020)10.17615/6vcj-0s21

N/A

0DataRank · unranked

1 citations

Guido Ferrari, Andrew J. McMichael, George M. Shaw, Rachel Tanner, Adam Ritchie +27 more

An orally bioavailable broad-spectrum antiviral inhibits SARS-CoV-2 and multiple endemic, epidemic and bat coronavirus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.19.997890

N/A

0DataRank · unranked

34 citations

Amy Sims, Shuntai Zhou, Rachel L. Graham, Collin S Hill, Sarah R. Leist +19 more

Acetylation of cytidine residues boosts HIV-1 gene expression by increasing viral RNA stability

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.31.925578

N/A

0DataRank · unranked

14 citations

Ananda Ayyappan Jaguva Vasudevan, Cecilia Martínez‐Campos, Ann Emery, Ronald Swanstrom, Bryan R. Cullen +1 more

Analysis of human immunodeficiency virus type 1 nef gene sequences present in vivo.

UNC Libraries(2020)10.17615/6zhs-k925

N/A

0DataRank · unranked

1 citations

Nantermet, P, Deborah H. Glueck, Shugars, D, Françoise Seillier‐Moiseiwitsch, Ronald Swanstrom +1 more

Deep Sequencing Reveals Compartmentalized HIV-1 in the Semen of Men with and without STI-associated Urethritis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.28.924225

N/A

0DataRank · unranked

0 citations

Chase D. McCann, Irving Hoffman, Gerald Tegha, Deborah Kamwendo, Mitch Matoga +4 more

HIV-1 Replication in the Central Nervous System Occurs in Two Distinct Cell Types

UNC Libraries(2020)10.17615/yy81-t228

N/A

0DataRank · unranked

0 citations

Gretja Schnell, Serena Spudich, Sarah Joseph, Richard W. Price, Ronald Swanstrom

Interplay between Single Resistance-Associated Mutations in the HIV-1 Protease and Viral Infectivity, Protease Activity, and Inhibitor Sensitivity

UNC Libraries(2020)10.17615/w462-aa77

N/A

0DataRank · unranked

0 citations

Sook-Kyung Lee, David M. Irlbeck, Janera Harris, Ronald Swanstrom, Neil Parkin +3 more

HIV-1 Transmission during Early Antiretroviral Therapy: Evaluation of Two HIV-1 Transmission Events in the HPTN 052 Prevention Study

UNC Libraries(2020)10.17615/magb-h010

N/A

0DataRank · unranked

0 citations

Ronald Swanstrom, Li‐Hua Ping, Estelle Piwowar‐Manning, Myron S. Cohen, Susan H. Eshleman +4 more

Characterizing HIV-1 Splicing by Using Next-Generation Sequencing

UNC Libraries(2020)10.17615/fnqq-zw86

N/A

0DataRank · unranked

0 citations

Ann Emery, Ronald Swanstrom, Elizabeth Pollom, Shuntai Zhou

Cytosine deamination and the precipitous decline of spontaneous mutation during Earth's history

UNC Libraries(2020)10.17615/19zw-w406

N/A

0DataRank · unranked

0 citations

Shuntai Zhou, Richard Wolfenden, Jesse Crayle, Charles Lewis, Ronald Swanstrom

Compartmentalized Replication of R5 T Cell-Tropic HIV-1 in the Central Nervous System Early in the Course of Infection

UNC Libraries(2020)10.17615/qtqh-hb83

N/A

0DataRank · unranked

0 citations

Gretja Schnell, Christa Buckheit Sturdevant, Richard W. Price, Ronald Swanstrom, Serena Spudich +1 more

The HIV-1 Env Protein: A Coat of Many Colors

UNC Libraries(2020)10.17615/rpnd-z651

N/A

0DataRank · unranked

0 citations

Kathryn T. Arrildt, Ronald Swanstrom, Sarah Joseph

Structure and immunogenicity of alternative forms of the simian immunodeficiency virus gag protein expressed using Venezuelan equine encephalitis virus replicon particles

UNC Libraries(2020)10.17615/sbp5-e733

N/A

0DataRank · unranked

0 citations

Nancy Davis, Alan C. Whitmore, Dominic Moore, Martha Collier, Ronald Swanstrom +5 more

A Direct Interaction with RNA Dramatically Enhances the Catalytic Activity of the HIV-1 Protease In Vitro

UNC Libraries(2020)10.17615/0jjd-ap39

N/A

0DataRank · unranked

0 citations

Ronald Swanstrom, Debra A. Ragland, Celia A. Schiffer, Sook-Kyung Lee

HIV-1 target cells in the CNS

UNC Libraries(2020)10.17615/pb0f-pg98

N/A

0DataRank · unranked

0 citations

Kathryn T. Arrildt, Sarah Joseph, Christa Buckheit Sturdevant, Ronald Swanstrom

Genotypic Susceptibility Scores and HIV Type 1 RNA Responses in Treatment-Experienced Subjects with HIV Type 1 Infection

UNC Libraries(2020)10.17615/z85r-q522

N/A

0DataRank · unranked

0 citations

Roy M. Gulick, Hongyu Jiang, David Katzenstein, Richard Haubrich, Jeffrey A. Anderson +5 more

Development of a Novel Screening Strategy Designed to Discover a New Class of HIV Drugs

UNC Libraries(2020)10.17615/71vw-7m95

N/A

0DataRank · unranked

0 citations

Nancy Cheng, Mel Reichman, Celia A. Schiffer, William P. Janzen, Emily A. Hull-Ryde +3 more

Primer ID Informs Next-Generation Sequencing Platforms and Reveals Preexisting Drug Resistance Mutations in the HIV-1 Reverse Transcriptase Coding Domain

UNC Libraries(2020)10.17615/28bm-4n74

N/A

0DataRank · unranked

0 citations

Jeffrey A. Anderson, Cassandra B. Jabara, Shuntai Zhou, Ronald Swanstrom, Joseph J. Eron +2 more

Architecture and secondary structure of an entire HIV-1 RNA genome

UNC Libraries(2020)10.17615/1js2-m244

N/A

0DataRank · unranked

0 citations

Kristen K. Dang, Julian W. Bess, Christopher W. Leonard, Christina L. Burch, Kevin M. Weeks +3 more

Comparison of SIV and HIV-1 Genomic RNA Structures Reveals Impact of Sequence Evolution on Conserved and Non-Conserved Structural Motifs

UNC Libraries(2020)10.17615/ypsb-7j82

N/A

0DataRank · unranked

0 citations

Kristen K. Dang, Elizabeth Pollom, Ronald Swanstrom, Christina L. Burch, E. Lake Potter +2 more

Identification and recovery of minor HIV-1 variants using the heteroduplex tracking assay and biotinylated probes

UNC Libraries(2020)10.17615/pnz4-wg82

N/A

0DataRank · unranked

0 citations

William L. Ince, Ronald Swanstrom, Gretja Schnell

Cross-sectional characterization of HIV-1 env compartmentalization in cerebrospinal fluid over the full disease course

UNC Libraries(2020)10.17615/rz7h-dm74

N/A

0DataRank · unranked

0 citations

Kevin Robertson, Ronald Swanstrom, Kimberly Ritola, Gretja Schnell, Richard W. Price +7 more

Virion-Associated Vpr Alleviates a Postintegration Block to HIV-1 Infection of Dendritic Cells

UNC Libraries(2020)10.17615/7m8k-7a21

N/A

0DataRank · unranked

0 citations

Chelsea R. Ettinger, Ann Emery, Suryaram Gummuluru, Hisashi Akiyama, Luis M. Agosto +3 more

Context Surrounding Processing Sites Is Crucial in Determining Cleavage Rate of a Subset of Processing Sites in HIV-1 Gag and Gag-Pro-Pol Polyprotein Precursors by Viral Protease

UNC Libraries(2020)10.17615/7mdb-fa43

N/A

0DataRank · unranked

0 citations

Ronald Swanstrom, Madhavi Kolli, Marc Potempa, Celia A. Schiffer, Sook Kyung Lee +1 more

Short Communication: HIV Type 1 Subtype C Variants Transmitted Through the Bottleneck of Breastfeeding Are Sensitive to New Generation Broadly Neutralizing Antibodies Directed Against Quaternary and CD4-Binding Site Epitopes

UNC Libraries(2020)10.17615/q9qm-4505

N/A

0DataRank · unranked

0 citations

Ronald Swanstrom, Genevieve G. Fouda, Steven R. Meshnick, David C. Montefiori, Suany Ojeda +2 more

HIV-1 Populations in Semen Arise through Multiple Mechanisms

UNC Libraries(2020)10.17615/hqrg-q938

N/A

0DataRank · unranked

0 citations

Cassandra B. Jabara, Li‐Hua Ping, Persephone Borrow, Laura P. Kincer, Leslie Arney +10 more

Generation and Characterization of a Bivalent HIV-1 Subtype C gp120 Protein Boost for Proof-of-Concept HIV Vaccine Efficacy Trials in Southern Africa

UNC Libraries(2020)10.17615/43j9-6v89

N/A

0DataRank · unranked

0 citations

Mark Wininger, Antu Dey, Barton F. Haynes, Susan W. Barnett Barnett, Ronald Swanstrom +10 more

Retrovirus-mediated gene transfer to cystic fibrosis airway epithelial cells: effect of selectable marker sequences on long-term expression

UNC Libraries(2020)10.17615/7whx-m241

N/A

0DataRank · unranked

0 citations

Richard C. Boucher, Larry G. Johnson, Ronald Swanstrom, K. L. Moore, Mabel L. Wong-sun +1 more

Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization

UNC Libraries(2020)10.17615/2f0r-b813

N/A

0DataRank · unranked

0 citations

Michael S. Seaman, David C. Montefiori, Kshitij Wagh, Glenda Gray, Feng Gao +33 more

Central Nervous System Compartmentalization of HIV-1 Subtype C Variants Early and Late in Infection in Young Children

UNC Libraries(2020)10.17615/2w24-vv79

N/A

0DataRank · unranked

0 citations

Gretja Schnell, Cassandra B. Jabara, Macpherson Mallewa, Ronald Swanstrom, Sarah Joseph +5 more

Pre-Clinical Development of a Recombinant, Replication-Competent Adenovirus Serotype 4 Vector Vaccine Expressing HIV-1 Envelope 1086 Clade C

UNC Libraries(2020)10.17615/3ftd-ng87

N/A

0DataRank · unranked

0 citations

Peggy Farness, David C. Montefiori, Robert E. Parks, Jenny B. Avanzini, Lo Vang +13 more

Quantification of the Latent HIV-1 Reservoir Using Ultra Deep Sequencing and Primer ID in a Viral Outgrowth Assay

UNC Libraries(2020)10.17615/0339-qq60

N/A

0DataRank · unranked

0 citations

Michael G. Hudgens, Shuntai Zhou, Nancie M. Archin, Pedro L. Baldoni, E. Spielvogel +3 more

The Choreography of HIV-1 Proteolytic Processing and Virion Assembly

UNC Libraries(2020)10.17615/hv36-jw02

N/A

0DataRank · unranked

0 citations

Ronald Swanstrom, Marc Potempa, Sook Kyung Lee

Ongoing HIV Transmission and the HIV Care Continuum in North Carolina

UNC Libraries(2020)10.17615/vyn8-w362

N/A

0DataRank · unranked

0 citations

Victoria Mobley, Kimberly A. Powers, Ronald Swanstrom, Anna B. Cope, Laura P. Kincer +9 more

Cross-Sectional Detection of Acute HIV Infection: Timing of Transmission, Inflammation and Antiretroviral Therapy

UNC Libraries(2020)10.17615/72gh-f169

N/A

0DataRank · unranked

0 citations

Persephone Borrow, Oliver Dibben, Barton F. Haynes, Ronald Swanstrom, Joseph J. Eron +15 more

Compartmentalized Human Immunodeficiency Virus Type 1 Originates from Long-Lived Cells in Some Subjects with HIV-1–Associated Dementia

UNC Libraries(2020)10.17615/zmte-qt72

N/A

0DataRank · unranked

0 citations

Patrick Harrington, Richard W. Price, Ronald Swanstrom, Serena Spudich, Gretja Schnell

The molecular epidemiology of HIV-1 envelope diversity during HIV-1 subtype C vertical transmission in Malawian mother???infant pairs

UNC Libraries(2020)10.17615/rscj-vv89

N/A

0DataRank · unranked

0 citations

Ronald Swanstrom, Christina L. Burch, Kristen K. Dang, Steven R. Meshnick, Jesse J. Kwiek +2 more

Bottlenecks in HIV-1 transmission: insights from the study of founder viruses

UNC Libraries(2020)10.17615/mywf-6803

N/A

0DataRank · unranked

0 citations

Angela D. M. Kashuba, Ronald Swanstrom, Myron S. Cohen, Sarah Joseph

Diversity and Tropism of HIV-1 Rebound Virus Populations in Plasma Level After Treatment Discontinuation

UNC Libraries(2020)10.17615/cmr4-1b38

N/A

0DataRank · unranked

0 citations

Ian Frank, Shuntai Zhou, Jeffrey M. Jacobson, Ronald Swanstrom, Maria M. Bednar +2 more

Phenotypic Correlates of HIV-1 Macrophage Tropism

UNC Libraries(2020)10.17615/271b-ay19

N/A

0DataRank · unranked

0 citations

Robert S. Heyderman, Kathryn T. Arrildt, Elena Dukhovlinova, Christa Buckheit Sturdevant, Sarah Joseph +12 more

Treatment as Prevention: Characterization of Partner Infections in the HIV Prevention Trials Network 052 Trial

UNC Libraries(2020)10.17615/g5gg-nq74

N/A

0DataRank · unranked

0 citations

Nehemiah Nhando, Estelle Piwowar‐Manning, Elena Dukhovlinova, Ying Qing Chen, Devin Sabin +28 more

Evolution of an HIV glycan–dependent broadly neutralizing antibody epitope through immune escape

UNC Libraries(2020)10.17615/e8bk-6082

N/A

0DataRank · unranked

0 citations

Quarraisha Abdool Karim, Bronwen E. Lambson, Penny L. Moore, Salim S. Abdool Karim, C Kurt Wibmer +15 more

β-d-N4-hydroxycytidine Inhibits SARS-CoV-2 Through Lethal Mutagenesis But Is Also Mutagenic To Mammalian Cells

The Journal of Infectious Diseases(2021)10.1093/infdis/jiab247

N/A

0DataRank · unranked

299 citations

Collin S Hill, Sanjay Sarkar, Longping V. Tse, Blaide M D Woodburn, Raymond F. Schinazi +5 more

HIV-1: To Splice or Not to Splice, That Is the Question

Viruses(2021)10.3390/v13020181

N/A

0DataRank · unranked

75 citations

Ronald Swanstrom, Ann Emery

Immunological Correlates of the HIV-1 Replication-Competent Reservoir Size

Clinical Infectious Diseases(2021)10.1093/cid/ciab587

N/A

0DataRank · unranked

12 citations

Catherine Riou, Sarah Joseph, Nancie M. Archin, David M. Margolis, Alan S. Perelson +12 more

Recurrent Signature Patterns in HIV-1 B Clade Envelope Glycoproteins Associated with either Early or Chronic Infections

UNC Libraries(2021)10.17615/pr2z-dq66

N/A

0DataRank · unranked

3 citations

Jesus F. Salazar-Gonzalez, Tongye Shen, Craig A. Magaret, William R. Schief, Brian Gaschen +27 more

Stephan Oroszlan and the Proteolytic Processing of Retroviral Proteins: Following A Pro

Viruses(2021)10.3390/v13112218

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0DataRank · unranked

2 citations

Wesley I. Sundquist, Ronald Swanstrom

Epitranscriptomic addition of m 6 A regulates HIV-1 RNA stability and alternative splicing

Genes & Development(2021)10.1101/gad.348508.121

N/A

0DataRank · unranked

72 citations

Hal P. Bogerd, Edward M. Kennedy, Ann Emery, Ronald Swanstrom, Bryan R. Cullen +1 more

HIV- 1: To Splice Or Not To Splice, That Is THE Question

Preprints.org(2021)10.20944/preprints202101.0114.v1

N/A

0DataRank · unranked

26 citations

Ann Emery, Ronald Swanstrom

Reply to Troth et al

The Journal of Infectious Diseases(2021)10.1093/infdis/jiab363

N/A

0DataRank · unranked

5 citations

Collin S Hill, Blaide M D Woodburn, Raymond F. Schinazi, Ronald Swanstrom, Shuntai Zhou

Covariation of amino acid positions in HIV-1 protease

UNC Libraries(2021)10.17615/md4d-fr74

N/A

0DataRank · unranked

1 citations

Noah G. Hoffman, Ronald Swanstrom, Celia A. Schiffer

Improved Success of Phenotype Prediction of the Human Immunodeficiency Virus Type 1 from Envelope Variable Loop 3 Sequence Using Neural Networks

UNC Libraries(2021)10.17615/h2h8-1563

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0DataRank · unranked

1 citations

Wolfgang Resch, Noah G. Hoffman, Ronald Swanstrom

Epitranscriptomic addition of m 6 A regulates HIV-1 RNA stability and alternative splicing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.23.432449

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0DataRank · unranked

0 citations

Hal P. Bogerd, Edward M. Kennedy, Ann Emery, Ronald Swanstrom, Bryan R. Cullen +1 more

Hepatitis C Virus (HCV) NS3 Sequence Diversity and Antiviral Resistance-Associated Variant Frequency in HCV/HIV Coinfection

UNC Libraries(2021)10.17615/w7wy-bt23

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0DataRank · unranked

0 citations

Stanley M. Lemon, Prema Menezes, Katie R. Mollan, Corbin D. Jones, Joseph J. Eron +7 more

Reply to Troth et al

UNC Libraries(2021)10.17615/e67z-nh56

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0DataRank · unranked

0 citations

Collin S Hill, Shuntai Zhou, Ronald Swanstrom, Blaide M D Woodburn, Raymond F. Schinazi

Genetic characteristics of the V3 region associated with CXCR4 usage in HIV-1 subtype C isolates

UNC Libraries(2021)10.17615/jda0-ay44

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0 citations

Ronald Swanstrom, Tonie Cilliers, Mia Coetzer, Lynn Morris, Li‐Hua Ping

A Sensitive Assay Using a Native Protein Substrate for Screening HIV-1 Maturation Inhibitors Targeting the Protease Cleavage Site between the Matrix and Capsid

UNC Libraries(2021)10.17615/tsh0-3j89

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0DataRank · unranked

0 citations

William P. Janzen, Celia A. Schiffer, Sook Kyung Lee, Ronald Swanstrom, Nancy Cheng +2 more

MEASURING ALLELIC HETEROGENEITY IN PLASMODIUM FALCIPARUM BY A HETERODUPLEX TRACKING ASSAY

UNC Libraries(2021)10.17615/2d6y-pd76

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0DataRank · unranked

0 citations

Deborah Kamwendo, Chansuda Wongsrichanalai, Ronald Swanstrom, Wanida Ittarat, Kimberly Ritola +4 more

Structure and immunogenicity of alternative forms of the simian immunodeficiency virus gag protein expressed using Venezuelan equine encephalitis virus replicon particles

UNC Libraries(2021)10.17615/x7mv-5m95

N/A

0DataRank · unranked

0 citations

Dominic Moore, Nancy Davis, Martha Collier, Christy Jurgens, Ronald Swanstrom +5 more

HIV-1 populations in blood and breast milk are similar

UNC Libraries(2021)10.17615/vs3f-j955

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0DataRank · unranked

0 citations

Myron S. Cohen, Susan A. Fiscus, Li Ping, Peter N. Kazembe, Noah G. Hoffman +7 more

A genetic approach for identifying critical residues in the fingers and palm subdomains of HIV-1 reverse transcriptase

UNC Libraries(2021)10.17615/v3nx-gr78

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0DataRank · unranked

0 citations

Ronald Swanstrom, Gary J. Pielak, Clyde A. Hutchison, Michael Conrad, Jason D. Merker +2 more

Infection and inflammation: New perspectives on Alzheimer's disease

Brain Behavior & Immunity - Health(2022)10.1016/j.bbih.2022.100462

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35 citations

Carol A. Colton, Joseph El Khoury, David Gate, Alison Goate, Michael T. Heneka +19 more

Unique Molecular Identifiers and Multiplexing Amplicons Maximize the Utility of Deep Sequencing To Critically Assess Population Diversity in RNA Viruses

ACS Infectious Diseases(2022)10.1021/acsinfecdis.2c00319

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10 citations

Collin S Hill, E. Spielvogel, Michael Clark, Michael G. Hudgens, Ronald Swanstrom +1 more

Encoded Conformational Dynamics of the HIV Splice Site A3 Regulatory Locus: Implications for Differential Binding of hnRNP Splicing Auxiliary Factors

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167728

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7 citations

Ann Emery, Niyati Jain, Andrew Sugarman, NaShea C. Kendrick, Le Luo +4 more

Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection

medRxiv(2022)10.1101/2022.06.29.22276868

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37 citations

Anne M. Hahn, Mary E. Petrone, Shuntai Zhou, David Ferguson, Mallery I. Breban +10 more

β-D-N4-hydroxycytidine (NHC) Inhibits SARS-CoV-2 Through Lethal Mutagenesis But Is Also Mutagenic To Mammalian Cells

UNC Libraries(2022)10.17615/6dxx-nz91

N/A

0DataRank · unranked

0 citations

Timothy P. Sheahan, Collin S Hill, Sanjay Sarkar, Raymond F. Schinazi, Mark T. Heise +5 more

Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.100943

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107 citations

Anne M. Hahn, Mary E. Petrone, Shuntai Zhou, David Ferguson, Mallery I. Breban +21 more

Rebound HIV-1 in cerebrospinal fluid after antiviral therapy interruption is mainly clonally amplified R5 T cell-tropic virus

Nature Microbiology(2023)10.1038/s41564-022-01306-6

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28 citations

Sarah Joseph, Maria M. Gilleece, Blake M. Hauser, Sabrina Sizemore, Shuntai Zhou +9 more

Selection of HIV-1 for resistance to fifth-generation protease inhibitors reveals two independent pathways to high-level resistance

eLife(2023)10.7554/elife.80328

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23 citations

Sook-Kyung Lee, Shuntai Zhou, G.J. Lockbaum, M. Henes, Amy Sondgeroth +7 more

HIV-1 is Transported into the Central Nervous System by Trafficking Infected Cells

Pathogens and Immunity(2023)10.20411/pai.v7i2.524

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15 citations

Gretja Schnell, Ronald Swanstrom, Melissa B. Miller, Serena Spudich, Joseph J. Eron +3 more

HIV-1 protease inhibitors with a P1 phosphonate modification maintain potency against drug-resistant variants by increased interactions with flap residues

European Journal of Medicinal Chemistry(2023)10.1016/j.ejmech.2023.115501

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15 citations

L.N. Rusere, M. Henes, K. Kosovrasti, Desaboini Nageswara Rao, E. Spielvogel +7 more

Evolution driven by a varying host environment selects for distinct HIV-1 entry phenotypes and other informative variants

Frontiers in Virology(2023)10.3389/fviro.2023.1291996

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5 citations

Nathan Long, Ronald Swanstrom, Shuntai Zhou

Nonsuppressible viremia during HIV-1 therapy meets molecular virology

Journal of Clinical Investigation(2023)10.1172/jci167925

N/A

0DataRank · unranked

3 citations

Sarah Joseph, Ronald Swanstrom, Ann Emery

Use of Next-Generation Sequencing in a State-Wide Strategy of HIV-1 Surveillance: Impact of the SARS-COV-2 Pandemic on HIV-1 Diagnosis and Transmission

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad211

N/A

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2 citations

Nathan Long, Matt Moeser, Collin S Hill, Erika Samoff, Victoria Mobley +12 more

N 4 -Hydroxycytidine/Molnupiravir Inhibits RNA-Virus Induced Encephalitis by Producing Mutated Viruses with Reduced Fitness

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.22.554316

N/A

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2 citations

Collin S Hill, Shuntai Zhou, Alyssa B. Evans, Jacqueline M. Leung, Christine Schneider Lewis +6 more

Selection of HIV-1 for resistance to fifth-generation protease inhibitors reveals two independent pathways to high-level resistance

UNC Libraries(2023)10.17615/k6f6-8629

N/A

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0 citations

Amy Sondgeroth, Akbar Ali, E. Spielvogel, M. Henes, Sook-Kyung Lee +7 more

Unique Molecular Identifiers and Multiplexing Amplicons Maximize the Utility of Deep Sequencing To Critically Assess Population Diversity in RNA Viruses

Figshare(2023)10.17615/w21x-7443

N/A

0DataRank · unranked

0 citations

Christiane Hill, E. Spielvogel, Michael Clark, Ronald Swanstrom, Michael G. Hudgens +1 more

The HIV-1 latent reservoir is largely sensitive to circulating T cells

UNC Libraries(2023)10.17615/b1ks-t058

N/A

0DataRank · unranked

0 citations

A.A. Adimora, D.M. Margolis, Z.L. Brumme, Yinyan Xu, Matthew Moeser +13 more

N4-Hydroxycytidine/molnupiravir inhibits RNA virus-induced encephalitis by producing less fit mutated viruses

PLoS Pathogens(2024)10.1371/journal.ppat.1012574

N/A

0DataRank · unranked

12 citations

Collin S Hill, Shuntai Zhou, Alyssa B. Evans, Jacqueline M. Leung, Christine A. Schneider +7 more

Combined Treatment of Severe Acute Respiratory Syndrome Coronavirus 2 Reduces Molnupiravir-Induced Mutagenicity and Prevents Selection for Nirmatrelvir/Ritonavir Resistance Mutations

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae213

N/A

0DataRank · unranked

9 citations

Nathan Long, Kyle Rosenke, Michael A. Jarvis, Heinz Feldmann, Ronald Swanstrom +1 more

Impact of Low-Frequency Human Immunodeficiency Virus Type 1 Drug Resistance Mutations on Antiretroviral Therapy Outcomes

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae131

N/A

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3 citations

Shuntai Zhou, Claire L Amon, Nathan Long, Collin S Hill, Lily E. Adams +9 more

The timing of HIV-1 infection of cells that persist on therapy is not strongly influenced by replication competency or cellular tropism of the provirus

PLoS Pathogens(2024)10.1371/journal.ppat.1011974

N/A

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7 citations

Melissa-Rose Abrahams, Matthew Moeser, Lynn Tyers, Nancie M. Archin, Amy Sondgeroth +12 more

Sequence Analysis of Inducible, Replication-Competent Virus Reveals No Evidence of HIV-1 Evolution During Suppressive Antiviral Therapy, Indicating a Lack of Ongoing Viral Replication

Open Forum Infectious Diseases(2024)10.1093/ofid/ofae212

N/A

0DataRank · unranked

5 citations

Amy Sondgeroth, Yinyan Xu, Joanna Warren, Shuntai Zhou, Maria Gilleece +9 more

Stoichiometry for entry and binding properties of the Env protein of R5 T cell-tropic HIV-1 and its evolutionary variant of macrophage-tropic HIV-1

mBio(2024)10.1128/mbio.00321-24

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0DataRank · unranked

5 citations

Amy Sondgeroth, Amelia C. McCue, Nathan I. Nicely, Ashutosh Tripathy, E. Spielvogel +6 more

The timing of HIV-1 infection of cells that persist on therapy is not strongly influenced by replication competency or cellular tropism of the provirus

UNC Libraries(2024)10.17615/c515-ey24

N/A

0DataRank · unranked

0 citations

Karim S.A, Archin N.M., Margolis David M., Amy Sondgeroth, Lynn Tyers +13 more

Use of Next Generation Sequencing in a State-Wide Strategy of HIV-1 Surveillance: Impact of the SARS-CoV-2 Pandemic on HIV-1 Diagnosis and Transmission

UNC Libraries(2024)10.17615/phg8-0f29

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0DataRank · unranked

0 citations

Shuntai Zhou, Erika Samoff, Collin S Hill, Matt Moeser, Michael Clark +12 more

Stoichiometry for entry and binding properties of the Env protein of R5 T cell-tropic HIV-1 and its evolutionary variant of macrophage-tropic HIV-1.

UNC Libraries(2024)10.17615/hcw5-b115

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0DataRank · unranked

0 citations

Karin Leiderman, Ruian Ke, Nathan I. Nicely, Matthew Moeser, Amy Sondgeroth +6 more

Combined noncanonical NF-κB agonism and targeted BET bromodomain inhibition reverse HIV latency ex vivo

UNC Libraries(2024)10.17615/7mta-7638

N/A

0DataRank · unranked

0 citations

Rab K. Prinjha, Simon Ghofrani, Cameron Sutton, David M. Irlbeck, JoAnn Kuruc +26 more

Sequence Analysis of Inducible, Replication-Competent Virus Reveals No Evidence of HIV-1 Evolution During Suppressive Antiviral Therapy, Indicating a Lack of Ongoing Viral Replication

UNC Libraries(2024)10.17615/k6aw-0q16

N/A

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0 citations

Joanna Warren, Sook-Kyung Lee, Nancie M. Archin, David S. Margolis, Ronald Swanstrom +9 more

The role of Nef in the long-term persistence of the replication-competent HIV reservoir in South African women

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.01.621615

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0DataRank · unranked

0 citations

Shorok Sebaa, Bianca Abrahams, Martha Nason, Mitchell J. Mumby, Jimmy D. Dikeakos +9 more

N4-Hydroxycytidine/molnupiravir inhibits RNA virus-induced encephalitis by producing less fit mutated viruses

UNC Libraries(2024)10.17615/xye9-zh77

N/A

0DataRank · unranked

0 citations

Peterson K.E, Sonia Jannatul F, Lal Ahamed M, Alyssa B. Evans, Woods T.A +7 more

The role of Nef in the long-term persistence of the replication-competent HIV reservoir in South African women

Journal of Virology(2025)10.1128/jvi.00217-25

N/A

0DataRank · unranked

1 citations

Shorok Sebaa, Bianca Abrahams, Martha Nason, Mitchell J. Mumby, Jimmy D. Dikeakos +9 more

Fluorinated HIV-1 protease inhibitors containing chiral hydroxyethylbenzene and indanol as P2′ ligands with potent activity against drug-resistant variants

European Journal of Medicinal Chemistry(2025)10.1016/j.ejmech.2025.118510

N/A

0DataRank · unranked

1 citations

E. Spielvogel, Desaboini Nageswara Rao, L.N. Rusere, Ala M. Shaqra, G.J. Lockbaum +6 more

HIV-1 Rebound Virus Consists of a Small Number of Lineages That Entered the Reservoir Close to ART Initiation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.29.635391

N/A

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4 citations

Matthew Moeser, Jean Felistas Ntuli, Shuntai Zhou, E. Spielvogel, Amy Sondgeroth +11 more

Sequencing HIV Diagnostic Samples to Detect Genetic Clusters and Assess Sequence Coverage Gaps

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf305

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Shuntai Zhou, Annalea Greifinger, Kimberly Enders, Nathan Long, Erika Samoff +10 more

Cotranslational folding and maturation of HIV-1 protease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.27.672612

N/A

0DataRank · unranked

0 citations

Felix Nicolaus, Ronald Swanstrom, Gunnar von Heijne, Justin M. Westerfield

The persistent pool of HIV-1-infected cells is formed episodically during untreated infection.

UNC Libraries(2025)10.17615/9zn7-gt17

N/A

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0 citations

Ann Emery, Olivia D Council, Amy Sondgeroth, Bonnie E. Shook‐Sa, Sergei L. Kosakovsky Pond +14 more

Acetylation of Cytidine Residues Boosts HIV-1 Gene Expression by Increasing Viral RNA Stability

Cell Host & Microbe(2020)10.1016/j.chom.2020.05.011

N/A

0DataRank · unranked

195 citations

Ananda Ayyappan Jaguva Vasudevan, Cecilia Martínez‐Campos, Ann Emery, Ronald Swanstrom, Bryan R. Cullen +1 more

HIV-1 is Transported into the Central Nervous System by Trafficking Infected Cells

UNC Libraries(2025)10.17615/xbg5-kj93

N/A

0DataRank · unranked

0 citations

Sarah Joseph, Gretja Schnell, Joseph J. Eron, Laura P. Kincer, Serena Spudich +3 more

Curing HIV: Seeking to Target and Clear Persistent Infection

Cell(2020)10.1016/j.cell.2020.03.005

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0DataRank · unranked

186 citations

Nancie M. Archin, Myron S. Cohen, Joseph J. Eron, Guido Ferrari, J. Víctor García +7 more

Fact and Fiction about 1%: Next Generation Sequencing and the Detection of Minor Drug Resistant Variants in HIV-1 Populations with and without Unique Molecular Identifiers

Viruses(2020)10.3390/v12080850

N/A

0DataRank · unranked

15 citations

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