Timothy S. Carpenter

Biochemistry, Genetics and Molecular BiologyComputer ScienceNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “Capturing Biologically Complex Tissue-Specific Membranes at Different Levels of Compositional Complexity”.

Capturing Biologically Complex Tissue-Specific Membranes at Different Levels of Compositional Complexity

The Journal of Physical Chemistry B(2020)10.1021/acs.jpcb.0c03368

N/A

0DataRank · unranked

70 citations

Harsh Bhatia, Talia Zeppelin, William F. Bennett, Kristy A. Carpenter, Pin‐Chia Hsu +6 more

Using Machine Learning to Predict Membrane Protein States Based on their Lipid Environment

Biophysical Journal(2020)10.1016/j.bpj.2019.11.2746

N/A

0DataRank · unranked

0 citations

Gautham Dharuman, Timothy S. Carpenter, Helgi I. Ingólfsson, Brian C. Van Essen, James N. Glosli +2 more

Machine-learning-based dynamic-importance sampling for adaptive multiscale simulations

Nature Machine Intelligence(2021)10.1038/s42256-021-00327-w

N/A

0DataRank · unranked

38 citations

Timothy S. Carpenter, Helgi I. Ingólfsson, Gautham Dharuman, Piyush Karande, Shusen Liu +7 more

Development of a CNS-permeable reactivator for nerve agent exposure: an iterative, multi-disciplinary approach

Scientific Reports(2021)10.1038/s41598-021-94963-2

N/A

0DataRank · unranked

20 citations

Michael Malfatti, Nicholas A. Be, Heather A. Enright, Saphon Hok, C. Linn Cadieux +8 more

Generalizable coordination of large multiscale workflows

OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)(2021)10.1145/3458817.3476210

N/A

0DataRank · unranked

27 citations

Francesco Di Natale, Joseph Y. Moon, Xiaohua Zhang, Joseph R. Chavez, Fikret Aydin +13 more

Machine learning–driven multiscale modeling reveals lipid-dependent dynamics of RAS signaling proteins

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2113297119

N/A

0DataRank · unranked

87 citations

Chris Neale, Timothy S. Carpenter, Rebika Shrestha, César A. López, Timothy H. Tran +37 more

Exploring CRD mobility during RAS/RAF engagement at the membrane

Biophysical Journal(2022)10.1016/j.bpj.2022.06.035

N/A

0DataRank · unranked

28 citations

César A. López, Chris Neale, Que N. Van, Timothy S. Carpenter, Francesco Di Natale +25 more

Biophysical Characterization of Membrane Proteins Embedded in Nanodiscs Using Fluorescence Correlation Spectroscopy

Membranes(2022)10.3390/membranes12040392

N/A

0DataRank · unranked

8 citations

Timothy S. Carpenter, Ted A. Laurence, Matthew A. Coleman, Megan L. Shelby, Chao Liu +1 more

The confluence of machine learning and multiscale simulations

Current Opinion in Structural Biology(2023)10.1016/j.sbi.2023.102569

N/A

0DataRank · unranked

25 citations

Fikret Aydin, Timothy S. Carpenter, Felice C. Lightstone, Peer‐Timo Bremer, Helgi I. Ingólfsson +3 more

Dynamic density functional theory of multicomponent cellular membranes

Physical Review Research(2023)10.1103/physrevresearch.5.013080

N/A

0DataRank · unranked

8 citations

Tomas Oppelstrup, Timothy S. Carpenter, Helgi I. Ingólfsson, Michael P. Surh, Felice C. Lightstone +2 more

Membrane lipids drive formation of KRAS4b-RAF1 RBDCRD nanoclusters on the membrane

Communications Biology(2024)10.1038/s42003-024-05916-0

N/A

0DataRank · unranked

13 citations

Timothy S. Carpenter, Que N. Van, Constance Agamasu, Marco Tonelli, Fikret Aydin +15 more

Generating Protein Structures for Pathway Discovery Using Deep Learning

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00816

N/A

0DataRank · unranked

6 citations

Robert Stephany, Jeremy O. B. Tempkin, Cláudio Santiago, Fikret Aydin, Mark Heimann +10 more

Anisotropic interactions for continuum modeling of protein–membrane systems

The Journal of Chemical Physics(2024)10.1063/5.0237408

N/A

0DataRank · unranked

3 citations

Liam Stanton, Jeremy O. B. Tempkin, Tuǧba N. Öztürk, Helgi I. Ingólfsson, Timothy S. Carpenter +1 more

The Martini 3 Lipidome: Expanded and Refined Parameters Improve Lipid Phase Behavior

ChemRxiv(2024)10.26434/chemrxiv-2024-8bjrr

N/A

0DataRank · unranked

12 citations

Helgi I. Ingólfsson, Daniel P. Ramirez-Echemendia, Luís Borges-Araújo, Mikkel D. Andreasen, Charly Empereur‐mot +24 more

The Martini 3 Lipidome: Expanded and Refined Parameters Improve Lipid Phase Behavior

ACS Central Science(2025)10.1021/acscentsci.5c00755

N/A

0DataRank · unranked

46 citations

Helgi I. Ingólfsson, Daniel P. Ramirez-Echemendia, Luís Borges-Araújo, Mikkel D. Andreasen, Charly Empereur‐mot +25 more

An in vitro BRAF activation assay elucidates molecular mechanisms driving disassembly of the autoinhibited BRAF state

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2508169122

N/A

0DataRank · unranked

6 citations

David Durrant, Matthew Drew, Suzanne I. Sandin, Juliana A. Martinez Fiesco, Xiao‐Hua Zhang +21 more

Dynamics and lipid membrane coupling of the RAS-RAF complex revealed via multiscale simulations

Biophysical Journal(2025)10.1016/j.bpj.2025.08.020

N/A

0DataRank · unranked

2 citations

Fikret Aydin, Chris Neale, Que N. Van, Xiaohua Zhang, Harsh Bhatia +35 more

Enhanced Exploration of Protein Conformational Space through Integration of Ultra-Coarse-Grained Models to Multiscale Workflows

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.4c08622

N/A

0DataRank · unranked

2 citations

Konstantia Georgouli, Loïc Pottier, Tomas Oppelstrup, Timothy S. Carpenter, Jeremy O. B. Tempkin +6 more

An In Vitro BRAF Activation Assay Elucidates Molecular Mechanisms Driving Disassembly of the Autoinhibited BRAF State

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.19.671159

N/A

0DataRank · unranked

1 citations

David Durrant, Matthew Drew, Suzanne I. Sandin, Juliana A. Martinez Fiesco, Xiaohua Zhang +21 more

Highly tail-asymmetric lipids interdigitate and cause bidirectional ordering

Journal of Lipid Research(2025)10.1016/j.jlr.2025.100797

N/A

0DataRank · unranked

0 citations

Thomas Ferron, Wei He, Benjamin Schwarz, Thomas Weiß, Nicholas O. Fischer +5 more