JoAnne L. Flynn

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 64 papers. Top paper: “Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control”.

Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control

Immunity(2022)10.1016/j.immuni.2022.04.004

N/A

4.8DataRank · unranked

294 citations

Travis K. Hughes, Constantine N. Tzouanas, Marc H. Wadsworth, Ang A. Tu, Todd M. Gierahn +38 more

Adjuvanting a subunit COVID-19 vaccine to induce protective immunity

Nature(2021)10.1038/s41586-021-03530-2

N/A

4.7DataRank · unranked

355 citations

Alexandra C. Walls, Nadia Golden, Caroline Atyeo, Stephanie Fischinger, Chunfeng Li +56 more

SIV and Mycobacterium tuberculosis synergy within the granuloma accelerates the reactivation pattern of latent tuberculosis

PLoS Pathogens(2020)10.1371/journal.ppat.1008413

N/A

1.1DataRank · unranked

57 citations

Tara Rutledge, Pauline Maiello, Tonilynn Baranowski, Alexander G. White, H. Jacob Borish +8 more

Robust IgM responses following intravenous vaccination with Bacille Calmette–Guérin associate with prevention of Mycobacterium tuberculosis infection in macaques

Nature Immunology(2021)10.1038/s41590-021-01066-1

N/A

0.722DataRank · unranked

122 citations

Anthony O’Neil, Patricia A. Darrah, Sally Shin, Alok Choudhary, Wenjun Li +11 more

Intravenous Bacille Calmette–Guérin vaccination protects simian immunodeficiency virus-infected macaques from tuberculosis

Nature Microbiology(2023)10.1038/s41564-023-01503-x

N/A

0.533DataRank · unranked

34 citations

Amy Ellis, Mark A. Rodgers, Abigail K. Gubernat, Janelle L. Gleim, Ryan V. Moriarty +18 more

T cell transcription factor expression evolves over time in granulomas from Mycobacterium tuberculosis-infected cynomolgus macaques

Cell Reports(2022)10.1016/j.celrep.2022.110826

N/A

0.500DataRank · unranked

27 citations

Pauline Maiello, Edwin Klein, Philana Ling Lin, H. Jacob Borish, Jaime Tomko +6 more

Distributable, metabolic PET reporting of tuberculosis

Nature Communications(2024)10.1038/s41467-024-48691-6

N/A

0.470DataRank · unranked

22 citations

Yong-Mo Ahn, Gwendolyn A. Marriner, Laura E. Via, François D’Hooge, Seung Seo Lee +25 more

High resolution imaging and five-year tuberculosis contact outcomes

medRxiv(2023)10.1101/2023.07.03.23292111

N/A

0.449DataRank · unranked

19 citations

Anna K. Coussens, Friedrich Thienemann, Bianca Sossen, Sandra Mukasa, James Warwick +31 more

Concomitant immunity to M. tuberculosis infection

Scientific Reports(2022)10.1038/s41598-022-24516-8

N/A

0.385DataRank · unranked

12 citations

JoAnne L. Flynn, Denise E. Kirschner, Jennifer J. Linderman, Louis R. Joslyn

Robust IgM responses following vaccination are associated with prevention of Mycobacterium tuberculosis infection in macaques

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.06.442979

N/A

0.269DataRank · unranked

5 citations

Anthony O’Neil, Patricia A. Darrah, Sally Shin, Alok Choudhary, Wenjun Li +11 more

Rankings of tuberculosis antibiotic treatment regimens are sensitive to spatial scale, detection limit, and initial host bacterial burden

Journal of Theoretical Biology(2025)10.1016/j.jtbi.2025.112176

N/A

0.165DataRank · unranked

2 citations

Maral Budak, Pauline Maiello, Kara Kracinovsky, Mark A. Rodgers, Jaime Tomko +5 more

Developing TB Vaccines for People with HIV: A Roadmap: Meeting Consensus Report

Research Square(2022)10.21203/rs.3.rs-1605760/v1

N/A

0DataRank · unranked

1 citations

Mark Hatherill, Vidya Mave, Judith S. Currier, Joseph J. Eron, Glenda Gray +31 more

Mycobacterium tuberculosis -specific CD4 T cells expressing transcription factors associate with bacterial control in granulomas

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.30.518638

N/A

0DataRank · unranked

1 citations

Kristen Kelly, Pauline Maiello, Helena Abbott, Shelby L. O’Connor, Philana Ling Lin +3 more

Optimizing tuberculosis treatment efficacy: comparing the standard regimen with Moxifloxacin-containing regimens

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.18.520959

N/A

0DataRank · unranked

1 citations

Joseph M. Cicchese, Pauline Maiello, H. Jacob Borish, Alexander G. White, Harris B. Chishti +12 more

T cell transcription factor expression evolves as adaptive immunity matures in granulomas from Mycobacterium tuberculosis -infected cynomolgus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.25.477732

N/A

0DataRank · unranked

0 citations

Pauline Maiello, Edwin Klein, Philana Ling Lin, H. Jacob Borish, Jaime Tomko +6 more

Identification and characterization of the T cell receptor (TCR) repertoire of the Cynomolgus macaque ( Macaca Fascicularis )

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.30.486315

N/A

0DataRank · unranked

0 citations

Shayla Boyce, Sarah K. Nyquist, Tasneem Jivanjee, Samira Ibrahim, Joshua D. Bromley +10 more

Airway T cells are a correlate of i.v. Bacille Calmette-Guerin-mediated protection against tuberculosis in rhesus macaques

Cell Host & Microbe(2023)10.1016/j.chom.2023.05.006

N/A

0DataRank · unranked

88 citations

Joseph J. Zeppa, Chuangqi Wang, Edward B. Irvine, Allison N. Bucşan, Mark Rodgers +19 more

CD8+ lymphocytes are critical for early control of tuberculosis in macaques

The Journal of Experimental Medicine(2023)10.1084/jem.20230707

N/A

0DataRank · unranked

88 citations

Sarah K. Nyquist, Michael C. Chao, Pauline Maiello, Amy J. Myers, Forrest Hopkins +22 more

Optimizing tuberculosis treatment efficacy: Comparing the standard regimen with Moxifloxacin-containing regimens

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010823

N/A

0DataRank · unranked

20 citations

Joseph M. Cicchese, Pauline Maiello, H. Jacob Borish, Alexander G. White, Harris B. Chishti +12 more

Mycobacterium tuberculosis-Specific CD4 T Cells Expressing Transcription Factors T-Bet or RORγT Associate with Bacterial Control in Granulomas

mBio(2023)10.1128/mbio.00477-23

N/A

0DataRank · unranked

17 citations

Kristen Kelly, Pauline Maiello, Helena Abbott, Shelby L. O’Connor, Philana Ling Lin +3 more

Protective intravenous BCG vaccination induces enhanced immune signaling in the airways

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.16.549208

N/A

0DataRank · unranked

20 citations

Edward B. Irvine, Jacob M. Rosenberg, Marc H. Wadsworth, Travis K. Hughes, Matt Sutton +12 more

Humoral correlates of protection against Mycobacterium tuberculosis following intravenous Bacille Calmette-Guérin vaccination in rhesus macaques

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.31.551245

N/A

0DataRank · unranked

7 citations

Patricia A. Darrah, Shu Wang, Chuangqi Wang, Ryan P. McNamara, Mario Roederer +6 more

Distributable, Metabolic PET Reporting of Tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.03.535218

N/A

0DataRank · unranked

6 citations

Yong‐Mo Ahn, Gwendolyn A. Marriner, Laura E. Via, François D’Hooge, Seung Seo Lee +25 more

Vaccination with intravenous BCG protects macaques with pre-existing SIV infection from tuberculosis

Research Square(2023)10.21203/rs.3.rs-2802306/v1

N/A

0DataRank · unranked

6 citations

Amy Ellis, Mark A. Rodgers, Abigail K. Gubernat, Janelle L. Gleim, Ryan V. Moriarty +18 more

Development of an Engineered Mycobacterium tuberculosis Strain for a Safe and Effective Tuberculosis Human Challenge Model

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.19.567569

N/A

0DataRank · unranked

5 citations

Hong-Wei Su, Joshua B. Wallach, Jeffrey C. Wagner, Benjamin J. Braunecker, Michelle Gardner +19 more

Antibiotic treatment modestly reduces protection against Mycobacterium tuberculosis reinfection in macaques

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.19.570845

N/A

0DataRank · unranked

5 citations

Pauline Maiello, Michael C. Chao, Forrest Hopkins, Douaa Mugahid, Philana Ling Lin +3 more

A “suicide” BCG strain provides enhanced immunogenicity and robust protection against Mycobacterium tuberculosis in macaques

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.22.568105

N/A

0DataRank · unranked

3 citations

Hongwei Su, Joshua D. Wallach, Yao Liu, Pauline Maiello, H. Jacob Borish +12 more

CD4+ T cells re-wire granuloma cellularity and regulatory networks to promote immunomodulation following Mtb reinfection

Immunity(2024)10.1016/j.immuni.2024.08.002

N/A

0DataRank · unranked

41 citations

Sharie Keanne C. Ganchua, Sarah K. Nyquist, Pauline Maiello, Michael C. Chao, H. Jacob Borish +17 more

Humoral correlates of protection against Mycobacterium tuberculosis following intravenous BCG vaccination in rhesus macaques

iScience(2024)10.1016/j.isci.2024.111128

N/A

0DataRank · unranked

20 citations

Patricia A. Darrah, Shu Wang, Chuangqi Wang, Ryan P. McNamara, Mario Roederer +6 more

Antibiotic treatment modestly reduces protection against Mycobacterium tuberculosis reinfection in macaques

Infection and Immunity(2024)10.1128/iai.00535-23

N/A

0DataRank · unranked

10 citations

Pauline Maiello, Michael C. Chao, Forrest Hopkins, Douaa Mugahid, Philana Ling Lin +3 more

Markov field network model of multi-modal data predicts effects of immune system perturbations on intravenous BCG vaccination in macaques

Cell Systems(2024)10.1016/j.cels.2024.10.001

N/A

0DataRank · unranked

8 citations

Amy Myers, Edward B. Irvine, Chuangqi Wang, Pauline Maiello, Mark Rodgers +15 more

Intravenous Bacillus Calmette–Guérin (BCG) Induces a More Potent Airway and Lung Immune Response than Intradermal BCG in Simian Immunodeficiency Virus–infected Macaques

The Journal of Immunology(2024)10.4049/jimmunol.2400417

N/A

0DataRank · unranked

7 citations

Erica C. Larson, Janelle L. Gleim, Brendon M. Wahlberg, Mark A. Rodgers, Julia C. Chehab +13 more

A measles-vectored vaccine candidate expressing prefusion-stabilized SARS-CoV-2 spike protein brought to phase I/II clinical trials: protection of African green monkeys from COVID-19 disease

Journal of Virology(2024)10.1128/jvi.01762-23

N/A

0DataRank · unranked

4 citations

Nicolas Escriou, Linda J. Rennick, Matthew J. Demers, Natasha L. Tilston‐Lunel, Anita K. McElroy +15 more

Defining a core breath profile for healthy, non-human primates

Scientific Reports(2024)10.1038/s41598-024-64910-y

N/A

0DataRank · unranked

1 citations

Keisean Stevenson, Ning Sun, Mohammad Sharif Khan, Jannatul Azmir, Marco Beccaria +7 more

CD4 T cells and CD8α+ lymphocytes are necessary for intravenous BCG-induced protection against tuberculosis in macaques

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.14.594183

N/A

0DataRank · unranked

8 citations

Joseph J. Zeppa, Allison N. Bucşan, Michael C. Chao, Supriya Pokkali, Forrest Hopkins +27 more

Systematic deconstruction of myeloid cell signaling in tuberculosis granulomas reveals IFN-γ, TGF-β, and time are associated with conserved myeloid diversity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.24.595747

N/A

0DataRank · unranked

5 citations

Hannah P. Gideon, Travis K. Hughes, Cal Gunnarson, Pauline Maiello, Douaa Mugahid +13 more

Author Correction: Intravenous Bacille Calmette–Guérin vaccination protects simian immunodeficiency virus-infected macaques from tuberculosis

Nature Microbiology(2024)10.1038/s41564-024-01631-y

N/A

0DataRank · unranked

0 citations

Amy Ellis, Mark A. Rodgers, Abigail K. Gubernat, Janelle L. Gleim, Ryan V. Moriarty +18 more

Markov Field network model of multi-modal data predicts effects of immune system perturbations on intravenous BCG vaccination in macaques

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.13.589359

N/A

0DataRank · unranked

0 citations

Amy J. Myers, Edward B. Irvine, Chuangqi Wang, Pauline Maiello, Mark Rodgers +15 more

Intravenous BCG induces a more potent airway and lung immune response than intradermal BCG in SIV-infected macaques 1

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.17.603921

N/A

0DataRank · unranked

0 citations

Erica C. Larson, Janelle L. Gleim, Brendon M. Wahlberg, Mark A. Rodgers, Julia C. Chehab +13 more

How macrophage heterogeneity affects tuberculosis disease and therapy

Nature reviews. Immunology(2025)10.1038/s41577-024-01124-3

N/A

0DataRank · unranked

70 citations

Nelson V. Simwela, Joshua T. Mattila, JoAnne L. Flynn, Henry C. Mwandumba, Davide Pisu +1 more

Intravenous BCG-mediated protection against tuberculosis requires CD4+ T cells and CD8α+ lymphocytes

The Journal of Experimental Medicine(2025)10.1084/jem.20241571

N/A

0DataRank · unranked

36 citations

Joseph J. Zeppa, Allison N. Bucşan, Michael C. Chao, Supriya Pokkali, Forrest Hopkins +27 more

Engineered Mycobacterium tuberculosis triple-kill-switch strain provides controlled tuberculosis infection in animal models

Nature Microbiology(2025)10.1038/s41564-024-01913-5

N/A

0DataRank · unranked

19 citations

Hong-Wei Su, Joshua B. Wallach, Jeffrey C. Wagner, Benjamin J. Braunecker, Michelle Gardner +20 more

A BCG kill switch strain protects against Mycobacterium tuberculosis in mice and non-human primates with improved safety and immunogenicity

Nature Microbiology(2025)10.1038/s41564-024-01895-4

N/A

0DataRank · unranked

12 citations

Hong-Wei Su, Joshua D. Wallach, Yao Liu, Pauline Maiello, H. Jacob Borish +12 more

Single-cell and spatial profiling highlights TB-induced myofibroblasts as drivers of lung pathology

The Journal of Experimental Medicine(2025)10.1084/jem.20251067

N/A

0DataRank · unranked

3 citations

Nuo Liu, Marc H. Wadsworth, Mark John. Chambers, Thabo Mpotje, Osaretin E. Asowata +25 more

Host-intrinsic and host-extrinsic factors modulate immunity to Mtb infection, reinfection, and noncanonical vaccination routes

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102286

N/A

0DataRank · unranked

1 citations

Andrew Simonson, Alex K. Shalek, JoAnne L. Flynn, Joshua D. Bromley

Characterizing PET CT patterns and bacterial dissemination features of tuberculosis relapse in the macaque model

Infection and Immunity(2025)10.1128/iai.00177-25

N/A

0DataRank · unranked

1 citations

Collin R. Diedrich, Tara Rutledge, Mark A. Rodgers, Kara Kracinovsky, H. Jacob Borish +8 more

CD8+ lymphocytes in immunity against tuberculosis

The Journal of Immunology(2025)10.1093/jimmun/vkaf268

N/A

0DataRank · unranked

1 citations

Andrew Simonson, JoAnne L. Flynn, Jiaxiang Li

Spatially-distinct programming of macrophage diversity within the granulomas of Mycobacterium tuberculosis infected nonhuman primates

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.12.659348

N/A

0DataRank · unranked

1 citations

Persis S Sunny, Molly L. Nelson, Beth Fallert Junecko, Roopa Venugopalan, Mark Rodgers +8 more

Rankings of tuberculosis antibiotic treatment regimens are sensitive to spatial scale, detection limit, and initial host bacterial burden

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.10.648004

N/A

0DataRank · unranked

0 citations

Maral Budak, Pauline Maiello, Kara Kracinovsky, Mark A. Rodgers, Jaime Tomko +5 more

Protection against reinfection with Mycobacterium tuberculosis extends across heterologous Mtb lineages

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.08.663727

N/A

0DataRank · unranked

0 citations

Michael C. Chao, Luke E Hood, Rachel Donlan, Forrest Hopkins, Michael R. Chase +11 more

Protection against reinfection with Mycobacterium tuberculosis extends across heterologous Mtb lineages

Mucosal Immunology(2025)10.1016/j.mucimm.2025.10.010

N/A

0DataRank · unranked

0 citations

Michael C. Chao, Luke E Hood, Rachel Donlan, Forrest Hopkins, Michael R. Chase +11 more

Effective protection against secondary Mycobacterium tuberculosis challenge with heterologous strain 2503

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.413

N/A

0DataRank · unranked

0 citations

Michael C. Chao, Forrest Hopkins, Michael R. Chase, Andrew J Vickers, Luke E Hood +8 more

SARS-CoV-2 infection of African green monkeys results in mild respiratory disease discernible by PET/CT imaging and shedding of infectious virus from both respiratory and gastrointestinal tracts

PLoS Pathogens(2020)10.1371/journal.ppat.1008903

N/A

0DataRank · unranked

146 citations

Sham Nambulli, Cynthia M. McMillen, Alexander G. White, Natasha L. Tilston‐Lunel, Joseph R. Albe +19 more

Viral control is required for intravenous BCG-mediated protection against tuberculosis in simian immunodeficiency virus-infected macaques

Research Square(2025)10.21203/rs.3.rs-8225191/v1

N/A

0DataRank · unranked

0 citations

Erica C. Larson, Brendon Wahlberg, Michael C. Chao, Mark A. Rodgers, Janelle L. Gleim +13 more

Prevention of tuberculosis in macaques after intravenous BCG immunization

Nature(2020)10.1038/s41586-019-1817-8

N/A

0DataRank · unranked

608 citations

Joseph J. Zeppa, Pauline Maiello, Joshua A. Hackney, Marc H. Wadsworth, Travis K. Hughes +18 more

Lymph nodes—The neglected battlefield in tuberculosis

PLoS Pathogens(2020)10.1371/journal.ppat.1008632

N/A

0DataRank · unranked

122 citations

Alexander G. White, Edwin Klein, JoAnne L. Flynn, Sharie Keanne C. Ganchua

Pharmacokinetics of tedizolid, sutezolid, and sutezolid-M1 in non-human primates

European Journal of Pharmaceutical Sciences(2020)10.1016/j.ejps.2020.105421

N/A

0DataRank · unranked

10 citations

Charles A. Scanga, Carolina de Miranda Silva, Matthew Zimmerman, Chelsea M. Causgrove, Brianne Stein +8 more

A computational model tracks whole-lung Mycobacterium tuberculosis infection and predicts factors that inhibit dissemination

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007280

N/A

0DataRank · unranked

34 citations

Louis R. Joslyn, H. Jacob Borish, Hannah P. Gideon, JoAnne L. Flynn, Denise E. Kirschner +2 more

SARS-CoV-2 infection of African green monkeys results in mild respiratory disease discernible by PET/CT imaging and prolonged shedding of infectious virus from both respiratory and gastrointestinal tracts

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.20.137687

N/A

0DataRank · unranked

41 citations

Sham Nambulli, Cynthia M. McMillen, Alexander G. White, Natasha L. Tilston‐Lunel, Joseph R. Albe +19 more

SIV and Mycobacterium tuberculosis synergy within the granuloma accelerates the reactivation pattern of latent tuberculosis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.21.959353

N/A

0DataRank · unranked

9 citations

Tara Rutledge, Pauline Maiello, Tonilynn Baranowski, Alexander G. White, H. Jacob Borish +8 more

Medical imaging of pulmonary disease in SARS-CoV-2-exposed non-human primates

Trends in Molecular Medicine(2021)10.1016/j.molmed.2021.12.001

N/A

0DataRank · unranked

26 citations

Ji Hyun Lee, Lisette Meijer, Thibaut Naninck, Lara Doyle‐Meyers, Alexander G. White +16 more

Retention of 64Cu-FLFLF, a Formyl Peptide Receptor 1-Specific PET Probe, Correlates with Macrophage and Neutrophil Abundance in Lung Granulomas from Cynomolgus Macaques

ACS Infectious Diseases(2021)10.1021/acsinfecdis.0c00826

N/A

0DataRank · unranked

16 citations

Wissam Beaino, Alexander G. White, Lea Nyiranshuti, Pauline Maiello, Jaime Tomko +7 more

Developing tuberculosis vaccines for people with HIV: consensus statements from an international expert panel

The Lancet HIV(2022)10.1016/s2352-3018(22)00255-7

N/A

0DataRank · unranked

18 citations

Mark Hatherill, Vidya Mave, Glenda Gray, Sharon Nachman, Sarah W. Read +27 more

Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis)

BMC Genomics(2022)10.1186/s12864-022-08867-0

N/A

0DataRank · unranked

9 citations

Sarah K. Nyquist, Shayla Boyce, Tasneem Jivanjee, Samira Ibrahim, Joshua D. Bromley +10 more