Matthew F. Krummel

Also affiliated with University of California San Francisco Medical Center, University of San Francisco

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 65 papers. Top paper: “Dynamic CD8+ T cell responses to cancer immunotherapy in human regional lymph nodes are disrupted in metastatic lymph nodes”.

Dynamic CD8+ T cell responses to cancer immunotherapy in human regional lymph nodes are disrupted in metastatic lymph nodes

Cell(2023)10.1016/j.cell.2023.02.021

N/A

4.9DataRank · unranked

421 citations

Trine Line Hauge Okholm, Kyle B. Jones, Elizabeth McCarthy, Candace C. Liu, Jacqueline L. Yee +18 more

Discovering dominant tumor immune archetypes in a pan-cancer census

Cell(2021)10.1016/j.cell.2021.12.004

N/A

4.2DataRank · unranked

176 citations

Bushra Samad, Jessica Tsui, Nayvin W. Chew, Peter Yan, Gabriella C. Reeder +75 more

Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS

Nature Communications(2021)10.1038/s41467-021-25040-5

N/A

0.661DataRank · unranked

81 citations

Stephanie A. Christenson, Ashley Byrne, Eran Mick, Angela Oliveira Pisco, Catherine DeVoe +89 more

Microbial dynamics and pulmonary immune responses in COVID-19 secondary bacterial pneumonia

Nature Communications(2024)10.1038/s41467-024-53566-x

N/A

0.549DataRank · unranked

16 citations

Alexandra Tsitsiklis, Victoria Chu, Hoang Van Phan, Catherine DeVoe, Christina Love +87 more

Global Absence and Targeting of Protective Immune States in Severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.28.359935

N/A

0.489DataRank · unranked

25 citations

Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray, William S. Chen +34 more

Spatiotemporal co-dependency between macrophages and exhausted CD8 + T cells in cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.27.461866

N/A

0.269DataRank · unranked

5 citations

Kenneth H. Hu, Alexis J. Combes, Bushra Samad, Tory Harwin, Arja Ray +10 more

Global absence and targeting of protective immune states in severe COVID-19

Nature(2021)10.1038/s41586-021-03234-7

N/A

0DataRank · unranked

279 citations

Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray, William S. Chen +60 more

Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19

Science Translational Medicine(2021)10.1126/scitranslmed.abh2624

N/A

0DataRank · unranked

239 citations

Sara E. Vazquez, George C. Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno +40 more

Increased risk of severe clinical course of COVID-19 in carriers of HLA-C*04:01

EClinicalMedicine(2021)10.1016/j.eclinm.2021.101099

N/A

0DataRank · unranked

101 citations

Phillip Suwalski, Manuel Holtgrewe, Alexander Rakitko, Charlotte Thibeault, Melina Müller +64 more

The WAVE complex associates with sites of saddle membrane curvature

The Journal of Cell Biology(2021)10.1083/jcb.202003086

N/A

0DataRank · unranked

60 citations

Rachel M. Brunetti, Jason P. Town, Brian R. Graziano, Artù Breuer, Patrina A. Pellett +6 more

Activating Immune Recognition in Pancreatic Ductal Adenocarcinoma via Autophagy Inhibition, MEK Blockade, and CD40 Agonism

Gastroenterology(2021)10.1053/j.gastro.2021.09.066

N/A

0DataRank · unranked

40 citations

Tristan Courau, Joseph Borison, Alexa J. Ritchie, Aaron T. Mayer, Matthew F. Krummel +2 more

A tumor-specific mechanism of T reg enrichment mediated by the integrin αvβ8

Science Immunology(2021)10.1126/sciimmunol.abf0558

N/A

0DataRank · unranked

29 citations

Kenji Kobayashi, Saburo Ito, Naoki Takasaka, Anthony Cormier, Jillian M. Jespersen +12 more

Layilin Anchors Regulatory T Cells in Skin

The Journal of Immunology(2021)10.4049/jimmunol.2000970

N/A

0DataRank · unranked

25 citations

Victoire Gouirand, Devi P Boda, Jingxian Zhang, Sofia V. Gearty, Bahar Zirak +18 more

Longitudinal single-cell epitope and RNA-sequencing reveals the immunological impact of type 1 interferon autoantibodies in critical COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.09.434529

N/A

0DataRank · unranked

29 citations

Sara E. Vazquez, George C. Hartoularos, Paul Bastard, Tianna Grant, Raymund Bueno +40 more

COVID-19 ARDS is characterized by a dysregulated host response that differs from cytokine storm and is modified by dexamethasone

Research Square(2021)10.21203/rs.3.rs-141578/v1

N/A

0DataRank · unranked

27 citations

Stephanie A. Christenson, Eran Mick, Thomas Deiss, Catherine DeVoe, Angela Oliveira Pisco +26 more

Holistic Characterization of Tumor Monocyte-to-Macrophage Differentiation Integrates Distinct Immune Phenotypes in Kidney Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.07.451502

N/A

0DataRank · unranked

10 citations

Alexis J. Combes, Arjun R. Rao, Mikhail Binnewies, Bushra Samad, Jessica Tsui +8 more

Active Surveillance Characterizes Human Intratumoral T Cell Exhaustion

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.06.443033

N/A

0DataRank · unranked

8 citations

Jordan Artichoker, Adam Fries, Austin Edwards, Alexis J. Combes, Gabriella C. Reeder +3 more

A Pan-Cancer Census of Dominant Tumor Immune Archetypes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441344

N/A

0DataRank · unranked

4 citations

Bushra Samad, Jessica Tsui, Nayvin W. Chew, Peter Yan, Gabriella C. Reeder +32 more

COVID-19 ARDS is characterized by a dysregulated host response that differs from cytokine storm and may be modified by dexamethasone

medRxiv(2021)10.1101/2020.12.28.20248552

N/A

0DataRank · unranked

2 citations

Stephanie A. Christenson, Eran Mick, Catherine DeVoe, Thomas Deiss, Angela Oliveira Pisco +23 more

Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells in cancer

Cancer Cell(2022)10.1016/j.ccell.2022.05.004

N/A

0DataRank · unranked

339 citations

Kenneth H. Hu, Alexis J. Combes, Bushra Samad, Tory Harwin, Arja Ray +10 more

Distinct metabolic states guide maturation of inflammatory and tolerogenic dendritic cells

Nature Communications(2022)10.1038/s41467-022-32849-1

N/A

0DataRank · unranked

119 citations

Paul V. Munson, Felix J. Hartmann, Alexis J. Combes, Philippe Pierre, Matthew F. Krummel +4 more

Tumor-associated macrophage heterogeneity is driven by tissue territories in breast cancer

Cell Reports(2022)10.1016/j.celrep.2022.110865

N/A

0DataRank · unranked

94 citations

Maxime Petit, Eléonore Weber-Delacroix, Alexis J. Combes, Arjun Rao Arkal, Sandrine Barthélémy +6 more

COVID-19–associated Lung Microvascular Endotheliopathy: A “From the Bench” Perspective

American Journal of Respiratory and Critical Care Medicine(2022)10.1164/rccm.202107-1774oc

N/A

0DataRank · unranked

60 citations

Lauren Rodriguez, Zachary A. Matthay, Elliot Lloyd, Alexander T. Fields, Roland J. Bainton +12 more

Holistic Characterization of Tumor Monocyte-to-Macrophage Differentiation Integrates Distinct Immune Phenotypes in Kidney Cancer

Cancer Immunology Research(2022)10.1158/2326-6066.cir-21-0588

N/A

0DataRank · unranked

47 citations

Alexis J. Combes, Arjun A. Rao, Mikhail Binnewies, Bushra Samad, Jessica Tsui +10 more

Mass cytometry reveals a conserved immune trajectory of recovery in hospitalized COVID-19 patients

Immunity(2022)10.1016/j.immuni.2022.06.004

N/A

0DataRank · unranked

27 citations

Trine Line Hauge Okholm, Iliana Tenvooren, Diana M. Marquez, Stanley Tamaki, Priscila Muñoz Sandoval +54 more

Hyperstabilization of T cell microvilli contacts by chimeric antigen receptors

The Journal of Cell Biology(2022)10.1083/jcb.202205118

N/A

0DataRank · unranked

21 citations

John P. Eichorst, Kyle Marchuk, En Cai, Carlos A. Castellanos, Venkataraman Sriram +3 more

Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy

Cancer Immunology Research(2022)10.1158/2326-6066.cir-21-0594

N/A

0DataRank · unranked

13 citations

Jordan Artichoker, Arja Ray, Hugo Gonzalez, Dan A. Rock, Kip P. Conner +2 more

Impact of protein identity on tumor-associated antigen uptake into infiltrating immune cells: A comparison of different fluorescent proteins as model antigens

PLoS ONE(2022)10.1371/journal.pone.0272857

N/A

0DataRank · unranked

12 citations

Emily Chen, Edward W. Roberts, Matthew F. Krummel, Nina K. Serwas, Rulan Yi

Distinct respiratory tract biological pathways characterizing ARDS molecular phenotypes

medRxiv(2022)10.1101/2022.03.31.22272425

N/A

0DataRank · unranked

6 citations

Stephanie A. Christenson, Beth Shoshana Zha, Angela Oliveira Pisco, Lucile Neyton, Eran Mick +26 more

Immediate myeloid depot for SARS-CoV-2 in the human lung

Research Square(2022)10.21203/rs.3.rs-1639631/v1

N/A

0DataRank · unranked

5 citations

Ran You, Arjun A. Rao, Ryan T. Davis, Lauren Rodriguez, Camille R. Simoneau +15 more

Immediate myeloid depot for SARS-CoV-2 in the human lung

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.28.489942

N/A

0DataRank · unranked

3 citations

Ran You, Arjun A. Rao, Ryan T. Davis, Lauren Rodriguez, Camille R. Simoneau +15 more

T cells use distinct topological and membrane receptor scanning strategies that individually coalesce during receptor recognition

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.23.481517

N/A

0DataRank · unranked

1 citations

Casey Beppler, John P. Eichorst, Kyle Marchuk, Matthew F. Krummel, En Cai

A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling

medRxiv(2022)10.1101/2022.11.07.22282049

N/A

0DataRank · unranked

0 citations

Haridha Shivram, Jason A. Vander Heiden, Christopher C. Overall, Luz D. Orozco, Xia Gao +49 more

Metabolic programs of T cell tissue residency empower tumour immunity

Nature(2023)10.1038/s41586-023-06483-w

N/A

0DataRank · unranked

125 citations

Maximilian Heeg, Kelly T. Kennewick, Ian T. Mathews, Giovanni Galletti, Vida Luna +15 more

Transcriptional space-time mapping identifies concerted immune and stromal cell patterns and gene programs in wound healing and cancer

Cell stem cell(2023)10.1016/j.stem.2023.05.001

N/A

0DataRank · unranked

51 citations

Nicholas F. Kuhn, Tristan Courau, Jessica Tsui, Bushra Samad, Patrick K. Ha +4 more

Astroglial toxicity promotes synaptic degeneration in the thalamocortical circuit in frontotemporal dementia with GRN mutations

Journal of Clinical Investigation(2023)10.1172/jci164919

N/A

0DataRank · unranked

41 citations

Dmitry Velmeshev, Marina Ramsey, Ravi K. Patel, Jiasheng Zhang, Mark Koontz +14 more

Uptake of tumor-derived microparticles induces metabolic reprogramming of macrophages in the early metastatic lung

Cell Reports(2023)10.1016/j.celrep.2023.112582

N/A

0DataRank · unranked

20 citations

Ran You, Sophia Liang, Kevin M. Tharp, Joshua L. Pollack, Valerie M. Weaver +3 more

SARS-CoV-2 infection of airway organoids reveals conserved use of Tetraspanin-8 by Ancestral, Delta, and Omicron variants

Stem Cell Reports(2023)10.1016/j.stemcr.2023.01.011

N/A

0DataRank · unranked

14 citations

Samantha Little, Kayla Kulhanek, Mélia Magnen, Kriti Bahl, Oghenekevwe M. Gbenedio +37 more

A myeloid program associated with COVID-19 severity is decreased by therapeutic blockade of IL-6 signaling

iScience(2023)10.1016/j.isci.2023.107813

N/A

0DataRank · unranked

12 citations

Haridha Shivram, Jason A. Vander Heiden, Christopher C. Overall, Luz D. Orozco, Xia Gao +95 more

High-dimensional immune cell profiling of cerebrospinal fluid from patients with metastatic breast cancer and leptomeningeal disease

npj Breast Cancer(2023)10.1038/s41523-023-00526-1

N/A

0DataRank · unranked

7 citations

Laura A. Huppert, Lev Malevanchik, Hope S. Rugo, Alexis J. Combes, Michael J. Campbell +3 more

Critical role of CD206+ macrophages in promoting a cDC1-NK-CD8 T cell anti-tumor immune axis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.31.560822

N/A

0DataRank · unranked

10 citations

Kenneth H. Hu, Kelly Kersten, Tristan Courau, Nicholas F. Kuhn, Itzia Zaleta-Linares +4 more

Multimodal delineation of a layer of effector function among exhausted CD8 T cells in tumors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.26.559470

N/A

0DataRank · unranked

5 citations

Molly Bassette, Kenneth H. Hu, Lomax F. Pass, Tristan Courau, Bushra Samad +9 more

Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19

Research Square(2023)10.21203/rs.3.rs-3168149/v1

N/A

0DataRank · unranked

3 citations

Lucile Neyton, Ravi K. Patel, Aartik Sarma, Andrew Willmore, Sidney C. Haller +9 more

Data from Holistic Characterization of Tumor Monocyte-to-Macrophage Differentiation Integrates Distinct Immune Phenotypes in Kidney Cancer

(2023)10.1158/2326-6066.c.6550550

N/A

0DataRank · unranked

0 citations

Alexis J. Combes, Arjun A. Rao, Mikhail Binnewies, Bushra Samad, Jessica Tsui +10 more

Data from Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy

(2023)10.1158/2326-6066.c.6550704.v1

N/A

0DataRank · unranked

0 citations

Jordan Artichoker, Arja Ray, Hugo Gonzalez, Dan A. Rock, Kip P. Conner +2 more

Data from Visualizing Spatial and Stoichiometric Barriers to Bispecific T-Cell Engager Efficacy

(2023)10.1158/2326-6066.c.6550704

N/A

0DataRank · unranked

0 citations

Jordan Artichoker, Arja Ray, Hugo Gonzalez, Dan A. Rock, Kip P. Conner +2 more

Targeting CD206+ macrophages disrupts the establishment of a key antitumor immune axis

The Journal of Experimental Medicine(2024)10.1084/jem.20240957

N/A

0DataRank · unranked

44 citations

Kenneth H. Hu, Kelly Kersten, Tristan Courau, Nicholas F. Kuhn, Itzia Zaleta-Linares +4 more

Host-microbe multiomic profiling reveals age-dependent immune dysregulation associated with COVID-19 immunopathology

Science Translational Medicine(2024)10.1126/scitranslmed.adj5154

N/A

0DataRank · unranked

25 citations

Alexandra Tsitsiklis, Cole Maguire, Elias K. Haddad, Patrice M. Becker, Seunghee Kim‐Schulze +95 more

Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19

Nature Communications(2024)10.1038/s41467-024-49756-2

N/A

0DataRank · unranked

19 citations

Ravi K. Patel, Aartik Sarma, K. Mark Ansel, Stephanie A. Christenson, Michael Adkisson +75 more

Immediate myeloid depot for SARS-CoV-2 in the human lung

Science Advances(2024)10.1126/sciadv.adm8836

N/A

0DataRank · unranked

12 citations

Ran You, Arjun A. Rao, Ryan T. Davis, Lauren Rodriguez, O Bernard +20 more

Discovery of a Linked Constellation of Gene Expression Revealed by Local Editing of Fibroblasts in Tumors

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.11.603114

N/A

0DataRank · unranked

1 citations

Itzia Zaleta-Linares, William A. Nyberg, Tristan Courau, Brittany Davidson, Tammie Tam +4 more

Intravital imaging of pulmonary lymphatics in inflammation and metastatic cancer

The Journal of Experimental Medicine(2025)10.1084/jem.20241359

N/A

0DataRank · unranked

21 citations

Longhui Qiu, Yurim Seo, Peter Bałuk, Dan Liu, Nina K. Serwas +7 more

Tumor cell heterogeneity drives spatial organization of the intratumoral immune response

The Journal of Experimental Medicine(2025)10.1084/jem.20242282

N/A

0DataRank · unranked

18 citations

Lotus Lum, Kenneth H. Hu, Piyush Chaudhary, Savannah Hughes, Cecilia Ledezma-Soto +13 more

Host-microbe multiomic profiling identifies distinct COVID-19 immune dysregulation in solid organ transplant recipients

Nature Communications(2025)10.1038/s41467-025-55823-z

N/A

0DataRank · unranked

6 citations

Joanna Schaenman, Hoang Van Phan, Cole Maguire, Alexandra Tsitsiklis, Nadine Rouphael +93 more

Submicron-Sampling of Living Cells by Macrophages

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.10.648051

N/A

0DataRank · unranked

2 citations

Rukman R. Thota, Nina K. Serwas, Vivasvan S. Vykunta, Kyle Marchuk, Megan K. Ruhland +5 more

Peripheral blood mononuclear cell transcriptomic trajectories reveal dynamic regulation of inflammatory actors in delirium

medRxiv(2025)10.1101/2025.02.14.25322163

N/A

0DataRank · unranked

0 citations

Naoki Takegami, Rubinee Simmasalam, Abiya Baqai, Elena Munoz, Anya Sikri +18 more

Minimalistic Transcriptomic Signatures Permit Accurate Early Prediction of COVID-19 Mortality

medRxiv(2025)10.1101/2025.05.18.25327658

N/A

0DataRank · unranked

0 citations

Emily Lydon, Hoang Van Phan, Natasha Spottiswoode, Lucile Neyton, Joann Diray‐Arce +34 more

Delirium in hospitalized COVID-19 patients is associated with dynamic changes in peripheral immune gene expression

GeroScience(2025)10.1007/s11357-025-01898-x

N/A

0DataRank · unranked

0 citations

Naoki Takegami, Rubinee Simmasalam, Abiya Baqai, Elena Munoz, Anya Sikri +18 more

Visualizing Synaptic Transfer of Tumor Antigens among Dendritic Cells

Cancer Cell(2020)10.1016/j.ccell.2020.05.002

N/A

0DataRank · unranked

244 citations

Edward W. Roberts, En Cai, Adriana M. Mujal, Kyle Marchuk, Casey Beppler +5 more

Discovery Stack Pilot: Feasibility and Outcomes of a Scientist-Designed Peer Review Model Separating Quality and Impact

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685758

N/A

0DataRank · unranked

0 citations

Beiyun C. Liu, Michael S. Kuhns, Daniel Mucida, Isabella Rauch, Lauren B. Rodda +12 more

mDia1/3-dependent actin polymerization spatiotemporally controls LAT phosphorylation by Zap70 at the immune synapse

Science Advances(2020)10.1126/sciadv.aay2432

N/A

0DataRank · unranked

18 citations

Yoshichika Katsura, Yukako Nishimura, Pakorn Kanchanawong, Kimio Tohyama, T. Ishizaki +7 more

Repair and Regeneration of the Respiratory System: Complexity, Plasticity, and Mechanisms of Lung Stem Cell Function

UNC Libraries(2020)10.17615/w82t-bt25

N/A

0DataRank · unranked

6 citations

Scott H. Randell, Jonathan A. Epstein, Laura E. Niklason, Calle, Elizabeth, Connie C. W. Hsia +13 more

Deficiency of RAMP1 Attenuates Antigen-Induced Airway Hyperresponsiveness in Mice

UNC Libraries(2020)10.17615/den6-1v06

N/A

0DataRank · unranked

2 citations

Kathleen M. Caron, Sarah E. Wetzel‐Strong, Xiaoyang Hua, Matthew F. Krummel, Manyu Li +2 more

Global Absence and Targeting of Protective Immune States in Severe COVID-19.

Research Square(2020)10.21203/rs.3.rs-97042/v1

N/A

0DataRank · unranked

8 citations

Alexis J. Combes, Tristan Courau, Nicholas F. Kuhn, Kenneth H. Hu, Arja Ray +34 more

Activating Immune Recognition in Pancreatic Ductal Adenocarcinoma Using Autophagy Inhibition, MEK blockade and CD40 Agonism

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.05.370569

N/A

0DataRank · unranked

1 citations

Tristan Courau, Leonard Lupin‐Jimenez, Joseph Borison, Alexa J. Ritchie, Aaron T. Mayer +3 more