Raúl Rabadán

Computer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.5Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A single-cell atlas of the mouse and human prostate reveals heterogeneity and conservation of epithelial progenitors

eLife(2020)10.7554/elife.59465

Top 7%

3.2DataRank

Top 7%143 citations

Francesco Cambuli, Luis Aparicio, Maho Shibata, Brian D. Robinson, Shouhong Xuan +6 more

Papers

Driven by 61 papers — median percentile 72. Top paper: “A single-cell atlas of the mouse and human prostate reveals heterogeneity and conservation of epithelial progenitors”.

A single-cell atlas of the mouse and human prostate reveals heterogeneity and conservation of epithelial progenitors

eLife(2020)10.7554/elife.59465

Top 7%

3.2DataRank

Top 7%143 citations

Francesco Cambuli, Luis Aparicio, Maho Shibata, Brian D. Robinson, Shouhong Xuan +6 more

Fc-enhanced anti-CTLA-4, anti-PD-1, doxorubicin, and ultrasound-mediated blood–brain barrier opening: A novel combinatorial immunotherapy regimen for gliomas

Neuro-Oncology(2024)10.1093/neuonc/noae135

N/A

0.706DataRank · unranked

34 citations

Karl J. Habashy, Andrew Gould, Junfei Zhao, Hinda Najem, Christina Amidei +29 more

Meta-analyses of mouse and human prostate single-cell transcriptomes reveal widespread epithelial plasticity in tissue regression, regeneration, and cancer

Genome Medicine(2025)10.1186/s13073-025-01432-w

N/A

0.380DataRank · unranked

11 citations

Laura Crowley, John R. Christin, Caroline Laplaca, Hanina Hibshoosh, Raúl Rabadán +2 more

A single-cell atlas of the mouse and human prostate reveals heterogeneity and conservation of epithelial progenitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.29.123836

Top 49%

0.367DataRank

Top 49%5 citations

Francesco Cambuli, Luis Aparicio, Maho Shibata, Brian D. Robinson, Shouhong Xuan +6 more

A Novel JAK1 Mutant Breast Implant-Associated Anaplastic Large Cell Lymphoma Patient-Derived Xenograft Fostering Pre-Clinical Discoveries

Cancers(2020)10.3390/cancers12061603

N/A

0DataRank · unranked

18 citations

Luca Vincenzo Cappelli, Paul Zumbo, Jude M. Phillip, Zhaoqi Liu, Shuhua Cheng +17 more

CD8+ T-cell–Mediated Immunoediting Influences Genomic Evolution and Immune Evasion in Murine Gliomas

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-19-3104

N/A

0DataRank · unranked

36 citations

Junfei Zhao, Takashi Tsujiuchi, Brice Laffleur, Víctor A. Arrieta, Aayushi Mahajan +17 more

Genomic Characterization of HIV-Associated Plasmablastic Lymphoma Identifies Pervasive Mutations in the JAK–STAT Pathway

Blood Cancer Discovery(2020)10.1158/2643-3249.bcd-20-0051

N/A

0DataRank · unranked

33 citations

Ioan Filip, Karen Gómez, Dewaldt Engelbrecht, Shabnum Meer, Pooja N. Lalloo +8 more

Linking Transcriptomic and Imaging Data Defines Features of a Favorable Tumor Immune Microenvironment and Identifies a Combination Biomarker for Primary Melanoma

Cancer Research(2020)10.1158/0008-5472.can-19-2039

N/A

0DataRank · unranked

31 citations

Andrew Chen, Emanuelle M. Rizk, Douglas K. Marks, Margaret H. Bogardus, Thomas D. Hart +12 more

Quantifying Genetic Innovation: Mathematical Foundations for the Topological Study of Reticulate Evolution

SIAM Journal on Applied Algebra and Geometry(2020)10.1137/18m118150x

N/A

0DataRank · unranked

3 citations

Raúl Rabadán, Daniel I. S. Rosenbloom, Michael Lesnick

Dose–response modeling in high-throughput cancer drug screenings: an end-to-end approach

Biostatistics(2020)10.1093/biostatistics/kxaa047

N/A

0DataRank · unranked

3 citations

Kathy Li, Haoran Zhang, Scott W. Linderman, Raúl Rabadán, David M. Blei +2 more

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.10.942748

N/A

0DataRank · unranked

30 citations

Ioan Filip, Ratul Chowdhury, Costas D. Maranas, Peter K. Sorger, Mohammed AlQuraishi +2 more

Identification of Relevant Genetic Alterations in Cancer using Topological Data Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.30.922310

N/A

0DataRank · unranked

11 citations

Yamina Mohamedi, Udi Rubin, Tim Chu, Oliver Elliott, Luís Arnes +5 more

SF3B1 mutant-induced missplicing of MAP3K7 causes anemia in myelodysplastic syndromes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.24.169052

N/A

0DataRank · unranked

9 citations

Zhaoqi Liu, Abdullah Mahmood Ali, Xin Wei, Alex Penson, Jian Zhang +6 more

HLA allele-specific expression loss in tumors can shorten survival and hinder immunotherapy

medRxiv(2020)10.1101/2020.09.30.20204875

N/A

0DataRank · unranked

4 citations

Rose Orenbuch, Junfei Zhao, Gulam A. Manji, Evangelina López de Maturana, Núria Malats +3 more

Comprehensive characterization of protein-protein interaction network perturbations by human disease mutations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.18.302588

N/A

0DataRank · unranked

0 citations

Junfei Zhao, Yang Wang, Weiqiang Lü, Zehui Liu, Yadi Zhou +19 more

Promotion of Hepatocellular Carcinoma by the Intestinal Microbiota and TLR4

UNC Libraries(2020)10.17615/1x65-aa46

N/A

0DataRank · unranked

0 citations

Raúl Rabadán, Geum Youn Gwak, Jorge Matías Caviglia, Myoung Kuk Jang, Maureen Bower +11 more

Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations

Cancer Cell(2021)10.1016/j.ccell.2021.03.012

N/A

0DataRank · unranked

407 citations

Ajay Nair, Francesco Brundu, Aashreya Ravichandra, Sonakshi Bhattacharjee, Michitaka Matsuda +32 more

iPLA2β-mediated lipid detoxification controls p53-driven ferroptosis independent of GPX4

Nature Communications(2021)10.1038/s41467-021-23902-6

N/A

0DataRank · unranked

332 citations

Bo Chu, Xin Yang, Zhaoqi Liu, Ying Jin, Ning Kon +5 more

Single-cell characterization of macrophages in glioblastoma reveals MARCO as a mesenchymal pro-tumor marker

Genome Medicine(2021)10.1186/s13073-021-00906-x

N/A

0DataRank · unranked

121 citations

Robyn D. Gartrell, Junfei Zhao, Pavan S. Upadhyayula, Wenting Zhao, Jinzhou Yuan +9 more

ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma

Nature Cancer(2021)10.1038/s43018-021-00260-2

N/A

0DataRank · unranked

120 citations

Andrew Chen, J. Robert Kane, Seong Jae Kang, Cynthia Kassab, Crismita Dmello +37 more

Global Patterns of Recombination across Human Viruses

Molecular Biology and Evolution(2021)10.1093/molbev/msab046

N/A

0DataRank · unranked

70 citations

Ioan Filip, Raúl Rabadán, Juan Ángel Patiño-Galindo

SF3B1 mutant-induced missplicing of MAP3K7 causes anemia in myelodysplastic syndromes

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2111703119

N/A

0DataRank · unranked

60 citations

Zhaoqi Liu, Abdullah Mahmood Ali, Xin Wei, Alex Penson, Jian Zhang +6 more

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2

Genome Medicine(2021)10.1186/s13073-021-00943-6

N/A

0DataRank · unranked

36 citations

Ioan Filip, Ratul Chowdhury, Costas D. Maranas, Peter K. Sorger, Mohammed AlQuraishi +2 more

TOP2B Enzymatic Activity on Promoters and Introns Modulates Multiple Oncogenes in Human Gliomas

Clinical Cancer Research(2021)10.1158/1078-0432.ccr-21-0312

N/A

0DataRank · unranked

9 citations

Junfei Zhao, Lu Wang, Subhas Mukherjee, Daniel Y. Zhang, Víctor A. Arrieta +23 more

ARP2/3- and resection-coupled genome reorganization facilitates translocations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465487

N/A

0DataRank · unranked

0 citations

Allana Schooley, Junfei Zhao, Benjamin R. Schrank, Elsa Callén, Shan Zha +6 more

Oncogenic Vav1-Myo1f induces therapeutically targetable macrophage-rich tumor microenvironment in peripheral T cell lymphoma

Cell Reports(2022)10.1016/j.celrep.2022.110695

N/A

0DataRank · unranked

25 citations

Ioan Filip, Robert Alberó, Juan Ángel Patiño-Galindo, S. Aidan Quinn, Wen-Hsuan W. Lin +16 more

Neoadjuvant chemoradiation alters the immune microenvironment in pancreatic ductal adenocarcinoma

OncoImmunology(2022)10.1080/2162402x.2022.2066767

N/A

0DataRank · unranked

19 citations

Thomas Enzler, Pan Kim, Benjamin T. Fullerton, Ladan Fazlollahi, Andrew Chen +20 more

KINOMO: A non-negative matrix factorization framework for recovering intra- and inter-tumoral heterogeneity from single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.02.490362

N/A

0DataRank · unranked

3 citations

Yiping Wang, Jana Biermann, Raúl Rabadán, Andrea Califano, Benjamin Izar +1 more

Smoother: A Unified and Modular Framework for Incorporating Structural Dependency in Spatial Omics Data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.25.513785

N/A

0DataRank · unranked

3 citations

Jean-Baptiste Reynier, Xi Fu, Guojie Zhong, Jiahao Jiang, Rydberg Supo Escalante +6 more

Immune Response following FLASH and Conventional Radiation in Diffuse Midline Glioma (DMG)

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.09.515507

N/A

0DataRank · unranked

1 citations

Hanna E. Minns, Hong-Jian Wei, Weijia Fan, Andrea Webster-Carrion, Masih Tazhibi +20 more

Mechanisms of insertions at a DNA double-strand break

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.30.509517

N/A

0DataRank · unranked

0 citations

Junfei Zhao, Jennifer Zagelbaum, Sho Takahashi, Portia Cummings, Allana Schooley +5 more

Computational structure prediction methods enable the systematic identification of oncogenic mutations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.18.517015

N/A

0DataRank · unranked

0 citations

Clara Reglero, Vinay Swamy, Jui Wan Loh, Hossein Khiabanian, Robert Alberó +5 more

Checkpoint kinase 1/2 inhibition potentiates anti-tumoral immune response and sensitizes gliomas to immune checkpoint blockade

Nature Communications(2023)10.1038/s41467-023-36878-2

N/A

0DataRank · unranked

47 citations

Junfei Zhao, Li Chen, Andrew Gould, Brandyn Castro, Víctor A. Arrieta +22 more

ATR kinase supports normal proliferation in the early S phase by preventing replication resource exhaustion

Nature Communications(2023)10.1038/s41467-023-39332-5

N/A

0DataRank · unranked

44 citations

Brian J. Lee, Hanwen Zhang, Wenxia Jiang, Nicole E. Bowen, Yunyue Wang +7 more

Mechanisms of insertions at a DNA double-strand break

Molecular Cell(2023)10.1016/j.molcel.2023.06.016

N/A

0DataRank · unranked

24 citations

Junfei Zhao, Jennifer Zagelbaum, Jina Lee, Sho Takahashi, Portia Cummings +6 more

Pervasiveness of HLA allele-specific expression loss across tumor types

Genome Medicine(2023)10.1186/s13073-023-01154-x

N/A

0DataRank · unranked

22 citations

Anqi Wang, Oleksandr Valeriiovych Kravets, Rose Orenbuch, Junfei Zhao, Tomin E. Perea-Chamblee +6 more

Inverse agonists of retinoic acid receptor/retinoid X receptor signaling as lineage-specific antitumor agents against human adenoid cystic carcinoma

JNCI Journal of the National Cancer Institute(2023)10.1093/jnci/djad062

N/A

0DataRank · unranked

14 citations

Luis Aparicio, Pierangela Palmerini, Junfei Zhao, Luis E. Valencia Salazar, Alexandra Schurer +6 more

A pan-cancer analysis implicates human NKIRAS1 as a tumor-suppressor gene

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2312595120

N/A

0DataRank · unranked

9 citations

Anqi Wang, Francesco Brundu, Pingzhang Wang, Zikai Wu, Kelly E. Butler +8 more

Smoother: a unified and modular framework for incorporating structural dependency in spatial omics data

Genome biology(2023)10.1186/s13059-023-03138-x

N/A

0DataRank · unranked

8 citations

Jean-Baptiste Reynier, Xi Fu, Guojie Zhong, Jiahao Jiang, Rydberg Supo Escalante +6 more

A transposase-derived gene required for human brain development

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.28.538770

N/A

0DataRank · unranked

7 citations

Sara A. Lewis, Rodrigo Lopez Gutierrez, Makiko Yamada, Elias Rodríguez-Fos, Mercè Planas-Fèlix +36 more

GET: a foundation model of transcription across human cell types

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.24.559168

N/A

0DataRank · unranked

7 citations

Shentong Mo, Alejandro Buendia, Anouchka P. Laurent, Anqi Shao, Maria del Mar Alvares-Torres +12 more

Genomic landscape of virus-associated cancers

medRxiv(2023)10.1101/2023.02.14.23285775

N/A

0DataRank · unranked

4 citations

Gianluca Schiavoni, Yoonhee Nam, J.-P. de Reynier, Cole C. Khamnei, Michael D. Aitken +9 more

Cytotoxic chemotherapy potentiates the immune response and efficacy of combination CXCR4/PD-1 inhibition in models of pancreatic ductal adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.24.573257

N/A

0DataRank · unranked

4 citations

Ilenia Pellicciotta, Carmine F. Palermo, Steven A. Sastra, Andrew Chen, Emily Alouani +7 more

ATR kinase supports normal proliferation in the early S phase by preventing replication resource exhaustion

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.26.542515

N/A

0DataRank · unranked

2 citations

Brian J. Lee, Hanwen Zhang, Wenxia Jiang, Nicole E. Bowen, Yunyue Wang +7 more

Immune Response following FLASH and Conventional Radiation in Diffuse Midline Glioma

International Journal of Radiation Oncology*Biology*Physics(2024)10.1016/j.ijrobp.2024.01.219

N/A

0DataRank · unranked

32 citations

Hanna E. Minns, Hong-Jian Wei, Weijia Fan, Andrea Webster-Carrion, Masih Tazhibi +20 more

Tumor detection by analysis of both symmetric- and hemi-methylation of plasma cell-free DNA

Nature Communications(2024)10.1038/s41467-024-50471-1

N/A

0DataRank · unranked

15 citations

Hui Zhou, Hui‐Chen Wu, Julia Furnari, Corina Kotidis, Raúl Rabadán +6 more

Understanding variants of unknown significance: the computational frontier

The Oncologist(2024)10.1093/oncolo/oyae103

N/A

0DataRank · unranked

5 citations

Raúl Rabadán, Xi Fu

Recombination across distant coronavirid species and genera is a rare event with distinct genomic features

Journal of Virology(2024)10.1128/jvi.01100-24

N/A

0DataRank · unranked

1 citations

Adolfo Garcı́a-Sastre, Jens H. Kuhn, Raúl Rabadán, Gustavo Palacios, Juan Ángel Patiño-Galindo

Meta-analyses of mouse and human prostate single-cell transcriptomes reveal widespread epithelial plasticity in tissue regression, regeneration, and cancer

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.30.578066

N/A

0DataRank · unranked

0 citations

Laura Crowley, John R. Christin, Caroline Laplaca, Hanina Hibshoosh, Raúl Rabadán +2 more

Subversion of Serotonin Receptor Signaling in Osteoblasts by Kynurenine Drives Acute Myeloid Leukemia

UNC Libraries(2024)10.17615/t3ne-yr91

N/A

0DataRank · unranked

0 citations

Eva Gil‐Iturbe, Marta Galán-Díez, Florence Borot, Bryan L. Roth, Azra Raza +14 more

A foundation model of transcription across human cell types

Nature(2025)10.1038/s41586-024-08391-z

N/A

0DataRank · unranked

100 citations

Shentong Mo, Alejandro Buendia, Anouchka P. Laurent, Anqi Shao, María del Mar Álvarez‐Torres +12 more

Ku limits RNA-induced innate immunity to allow Alu expansion in primates

Nature(2025)10.1038/s41586-025-09104-w

N/A

0DataRank · unranked

10 citations

Angelina Li, Suvrajit Maji, Brian J. Lee, Sophie Marianne Korn, Jake A. Gertie +17 more

A niche driven mechanism determines response and a mutation-independent therapeutic approach for myeloid malignancies

Cancer Cell(2025)10.1016/j.ccell.2025.03.007

N/A

0DataRank · unranked

5 citations

Abdullah Mahmood Ali, Rossella Labella, Brygida Bisikirska, Álvaro Cuesta‐Domínguez, Paraskevi Vgenopoulou +29 more

Illuminating the Noncoding Genome in Cancer Using Artificial Intelligence

Cancer Research(2025)10.1158/0008-5472.can-25-0482

N/A

0DataRank · unranked

3 citations

Xi Fu, Raúl Rabadán, Maria del Mar Alvarez-Torres

Deciphering the role of complement system genes in pancreatic cancer susceptibility and prognosis

Nature Communications(2025)10.1038/s41467-025-65811-y

N/A

0DataRank · unranked

2 citations

Raúl Rabadán, Lola Alonso, Ioan Filip, Sergio Sabroso‐Lasa, Ane Moreno-Oya +77 more

Deciphering the Role of Complement System Genes in Pancreatic Cancer Susceptibility and Prognosis

medRxiv(2025)10.1101/2025.04.17.25326022

N/A

0DataRank · unranked

0 citations

Raúl Rabadán, Lola Alonso, Ioan Filip, Sergio Sabroso‐Lasa, Ane Moreno-Oya +30 more

Transcriptome sequencing of Hodgkin lymphoma Hodgkin and Reed-Sternberg cells reveals escape from NK cell recognition and an unfolded protein response

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.05.667241

N/A

0DataRank · unranked

0 citations

Isabella Y. Kong, Wikum Dinalankara, Jonathan Reichel, Matthew Teater, Bhavneet Bhinder +15 more

Transcriptome sequencing of Hodgkin lymphoma Hodgkin and Reed-Sternberg cells reveals escape from NK cell recognition and an unfolded protein response

Research Square(2025)10.21203/rs.3.rs-7957952/v1

N/A

0DataRank · unranked

0 citations

Mikhail Roshal, Isabella Y. Kong, Wikum Dinalankara, Jonathan Reichel, Matthew Teater +16 more

Mutations in the RNA Splicing Factor SF3B1 Promote Tumorigenesis through MYC Stabilization

Cancer Discovery(2020)10.1158/2159-8290.cd-19-1330

N/A

0DataRank · unranked

123 citations

Akihide Yoshimi, Jiguang Wang, Hana Cho, Stanley Chun-Wei Lee, Michelle Ki +11 more

A Random Matrix Theory Approach to Denoise Single-Cell Data

Patterns(2020)10.1016/j.patter.2020.100035

N/A

0DataRank · unranked

57 citations

Mykola Bordyuh, Andrew J. Blumberg, Raúl Rabadán, Luis Aparicio

Identification of relevant genetic alterations in cancer using topological data analysis

Nature Communications(2020)10.1038/s41467-020-17659-7

N/A

0DataRank · unranked

55 citations

Yamina Mohamedi, Udi Rubin, Tim Chu, Adam N. Alghalith, Oliver Elliott +6 more

Raúl Rabadán

Indexed papers

Top data-sharing exemplar

Papers