Joshua Levy

Also affiliated with Dartmouth–Hitchcock Medical Center, White River Junction VA Medical Center, National Center for Post Traumatic Stress Disorder

Computer ScienceBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 61 papers. Top paper: “Large‐scale validation study of an improved semiautonomous urine cytology assessment tool: AutoParis‐X”.

Large‐scale validation study of an improved semiautonomous urine cytology assessment tool: AutoParis‐X

Cancer Cytopathology(2023)10.1002/cncy.22732

N/A

0.736DataRank · unranked

16 citations

Natt Chan, Jonathan D. Marotti, Darcy A. Kerr, Edward J. Gutmann, Ryan Glass +6 more

A deep learning algorithm to detect cutaneous squamous cell carcinoma on frozen sections in Mohs micrographic surgery: A retrospective assessment

Experimental Dermatology(2023)10.1111/exd.14949

N/A

0.651DataRank · unranked

11 citations

Gokul Raghavendra Srinivasan, Rachael Chacko, Sophie Chen, Anish Suvarna, Louis Vaickus +9 more

Intraoperative margin assessment for basal cell carcinoma with deep learning and histologic tumor mapping to surgical site

npj Precision Oncology(2024)10.1038/s41698-023-00477-7

N/A

0.591DataRank · unranked

15 citations

Matthew Davis, Rachael Chacko, Michael J. Davis, Lucy Fu, Tarushii Goel +10 more

Potential to Enhance Large Scale Molecular Assessments of Skin Photoaging through Virtual Inference of Spatial Transcriptomics from Routine Staining

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.30.551188

N/A

0.477DataRank · unranked

7 citations

Matthew Davis, Matthew LeBoeuf, Michael Fatemi, Zarif Azher, Yunrui Lu +12 more

Machine Learning Approaches for Hospital Acquired Pressure Injuries: A Retrospective Study of Electronic Medical Records

Frontiers in Medical Technology(2022)10.3389/fmedt.2022.926667

N/A

0.449DataRank · unranked

19 citations

Jorge F. Lima, Megan W. Miller, Gary L. Freed, A. James O’Malley, Rebecca T. Emeny +1 more

Leveraging Natural Language Processing to Improve Electronic Health Record Suicide Risk Prediction for Veterans Health Administration Users

The Journal of Clinical Psychiatry(2023)10.4088/jcp.22m14568

N/A

0.449DataRank · unranked

19 citations

Joshua Levy, Kallisse R. Dent, Vincent Dufort, Glenn T. Gobbel, Bradley V. Watts +2 more

Using Satellite Images and Deep Learning to Identify Associations Between County-Level Mortality and Residential Neighborhood Features Proximal to Schools: A Cross-Sectional Study

Frontiers in Public Health(2021)10.3389/fpubh.2021.766707

N/A

0.446DataRank · unranked

7 citations

Rebecca M. Lebeaux, Anne G. Hoen, Brock C. Christensen, Louis Vaickus, Todd A. MacKenzie +1 more

Does the timing of postoperative showering impact infection rates? A systematic review and meta-analysis

Journal of Plastic Reconstructive & Aesthetic Surgery(2020)10.1016/j.bjps.2020.02.007

N/A

0.373DataRank · unranked

11 citations

Maria L. Reategui Via y Rada, Joshua Levy, Nina Shank, Christopher D. Funderburk, Joseph H. Shin +1 more

Predictors of gastrostomy tube placement in patients with head and neck cancer undergoing resection and flap-based reconstruction: systematic review and meta-analysis

Journal of Plastic Reconstructive & Aesthetic Surgery(2022)10.1016/j.bjps.2022.08.040

N/A

0.345DataRank · unranked

9 citations

Libby R. Copeland‐Halperin, Falen Demsas, Prashanthi Divakar, Nina Shank, Heather B. Blunt +4 more

Using Natural Language Processing to develop risk-tier specific suicide prediction models for Veterans Affairs patients

Journal of Psychiatric Research(2024)10.1016/j.jpsychires.2024.09.031

N/A

0.345DataRank · unranked

9 citations

Monica Dimambro, Joshua Levy, Brian Shiner, Maxwell Levis

Mixed Effects Machine Learning Models for Colon Cancer Metastasis Prediction using Spatially Localized Immuno-Oncology Markers

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.01.454649

N/A

0.345DataRank · unranked

9 citations

Carly A. Bobak, Mustafa Nasir-Moin, Eren M. Veziroglu, Scott Palisoul, Rachael E. Barney +5 more

Chewing-Activated TRPV4/PIEZO1– HIF-1α –Zn Axes in a Rat Periodontal Complex

Journal of Dental Research(2025)10.1177/00220345241294001

N/A

0.330DataRank · unranked

8 citations

Brandon H. Lee, Zhan‐Qing Yang, Tsung‐Jung Ho, Hongliang Ci, Brian P. Jackson +5 more

Journey across epidemiology’s third variables: an anesthesiologist’s guide for successfully navigating confounding, mediation, and effect modification

Regional Anesthesia & Pain Medicine(2021)10.1136/rapm-2020-101984

N/A

0.323DataRank · unranked

7 citations

Rebecca M. Lebeaux, Brock C. Christensen, Tor D. Tosteson, Yvon F. Bryan, Joshua Levy

Dynamic suicide topic modelling: Deriving population‐specific, psychosocial and time‐sensitive suicide risk variables from Electronic Health Record psychotherapy notes

Clinical Psychology & Psychotherapy(2023)10.1002/cpp.2842

N/A

0.312DataRank · unranked

7 citations

Joshua Levy, Vincent Dufort, Carey J. Russ, Brian Shiner, Maxwell Levis

Large-scale longitudinal comparison of urine cytological classification systems reveals potential early adoption of The Paris System criteria

Journal of the American Society of Cytopathology(2022)10.1016/j.jasc.2022.08.001

N/A

0.312DataRank · unranked

7 citations

Xiaoying Liu, Jonathan D. Marotti, Darcy A. Kerr, Edward J. Gutmann, Ryan Glass +3 more

Spatial Omics Driven Crossmodal Pretraining Applied to Graph-based Deep Learning for Cancer Pathology Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.30.551187

N/A

0.269DataRank · unranked

5 citations

Michael Fatemi, Yunrui Lu, Gokul Raghavendra Srinivasan, Alos Diallo, Brock C. Christensen +7 more

Integrative co-registration of elemental imaging and histopathology for enhanced spatial multimodal analysis of tissue sections through TRACE

Bioinformatics Advances(2024)10.1093/bioadv/vbaf001

N/A

0.165DataRank · unranked

2 citations

Serin Han, Aruesha Srivastava, Neha Shaik, Matthew Chan, Alos Diallo +15 more

Association of deep learning-derived histologic features of placental chorionic villi with maternal and infant characteristics in the New Hampshire birth cohort study

Placenta(2025)10.1016/j.placenta.2025.07.084

N/A

0.104DataRank · unranked

1 citations

Gokul Srinivasan, Caitlin G. Howe, Edward Zhang, Catherine Jeon, Gnan Suchir Gupta Paruchuri +20 more

Maternal glucose levels and late pregnancy circulating extracellular vesicle and particle miRNAs in the MADRES pregnancy cohort

Epigenetics(2024)10.1080/15592294.2024.2404198

N/A

0.104DataRank · unranked

1 citations

Helen B. Foley, Joshua Levy, Megan E. Romano, Jiang Gui, Jessica L. Bentz +7 more

The Overlooked Role of Specimen Preparation in Bolstering Deep Learning-Enhanced Spatial Transcriptomics Workflows

medRxiv(2023)10.1101/2023.10.09.23296700

N/A

0.104DataRank · unranked

1 citations

Yunrui Lu, Alos Diallo, Gokul Raghavendra Srinivasan, Zarif Azher, Brock C. Christensen +8 more

Development of an interactive web dashboard to facilitate the reexamination of pathology reports for instances of underbilling of CPT codes

Journal of Pathology Informatics(2023)10.1016/j.jpi.2023.100187

N/A

0DataRank · unranked

7 citations

Yunrui Lu, Shuyang Lu, Uhuru Kamau, Robert Hamilton, Jason R. Pettus +4 more

Editorial: Artificial intelligence: applications in clinical medicine

Frontiers in Medical Technology(2023)10.3389/fmedt.2023.1206969

N/A

0DataRank · unranked

6 citations

Emilio Madrigal, Louis Vaickus, Joshua Levy

A deep learning algorithm to detect cutaneous squamous cell carcinoma on frozen sections in Mohs micrographic surgery: a retrospective assessment

medRxiv(2023)10.1101/2023.05.14.23289960

N/A

0DataRank · unranked

5 citations

Gokul Raghavendra Srinivasan, Rachael Chacko, Sophie Chen, Anish Suvarna, Louis Vaickus +9 more

Feasibility of Inferring Spatial Transcriptomics from Single-Cell Histological Patterns for Studying Colon Cancer Tumor Heterogeneity

medRxiv(2023)10.1101/2023.10.09.23296701

N/A

0DataRank · unranked

4 citations

Yunrui Lu, Cyril Sharma, Eric Feng, Zarif Azher, Alos Diallo +12 more

Examining Longitudinal Markers of Bladder Cancer Recurrence Through a Semi-Autonomous Machine Learning System for Quantifying Specimen Atypia from Urine Cytology

medRxiv(2023)10.1101/2023.03.02.23286716

N/A

0DataRank · unranked

1 citations

Natt Chan, Jonathan D. Marotti, Nathalie J. Rodrigues, Abdol Aziz Ould Ismail, Darcy A. Kerr +8 more

Integration of a deep learning basal cell carcinoma detection and tumor mapping algorithm into the Mohs micrographic surgery workflow and effects on clinical staffing: a simulated, retrospective study

medRxiv(2023)10.1101/2023.05.13.23289947

N/A

0DataRank · unranked

1 citations

Matthew J. Davis, Joshua Levy, Matthew LeBoeuf, Rachael Chacko

A systematic review of deep learning models trained and tested using the HAM10000 dataset: an overview of recent advancements and challenges

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.7834480

N/A

0DataRank · unranked

0 citations

Jason R. McFadden, Yunrui Lu, Matthew Davis, Joshua Levy, Gokul Raghavendra Srinivasan

GRANDPA: GeneRAtive network sampling using degree and property augmentation applied to the analysis of partially confidential healthcare networks

Applied Network Science(2023)10.1007/s41109-023-00548-5

N/A

0DataRank · unranked

0 citations

Yifan Zhao, Joshua Levy, A. James O’Malley, Carly A. Bobak

Using natural language processing to evaluate temporal patterns in suicide risk variation among high-risk Veterans

Psychiatry Research(2024)10.1016/j.psychres.2024.116097

N/A

0DataRank · unranked

9 citations

Joshua Levy, Monica Dimambro, Vincent Dufort, Dana J Ludmer, Matan Goldberg +2 more

Integration of a deep learning basal cell carcinoma detection and tumor mapping algorithm into the Mohs micrographic surgery workflow and effects on clinical staffing: A simulated, retrospective study

JAAD International(2024)10.1016/j.jdin.2024.02.014

N/A

0DataRank · unranked

10 citations

Matthew J. Davis, Joshua Levy, Matthew LeBoeuf, Rachael Chacko

An initial game-theoretic assessment of enhanced tissue preparation and imaging protocols for improved deep learning inference of spatial transcriptomics from tissue morphology

Briefings in Bioinformatics(2024)10.1093/bib/bbae476

N/A

0DataRank · unranked

8 citations

Yunrui Lu, Alos Diallo, Gokul Raghavendra Srinivasan, Zarif Azher, Brock C. Christensen +8 more

Insights to aging prediction with AI based epigenetic clocks

Epigenomics(2024)10.1080/17501911.2024.2432854

N/A

0DataRank · unranked

7 citations

Alos Diallo, Marietta K. Saldias Montivero, Sameer Gabbita, Lucas A. Salas, Brock C. Christensen +1 more

Machine learning for predicting cognitive deficits using auditory and demographic factors

PLoS ONE(2024)10.1371/journal.pone.0302902

N/A

0DataRank · unranked

5 citations

Basile Montagnese, Joshua Levy, Abigail M. Fellows, Jiang Gui, Samantha M. Leigh +4 more

Integrative Co-Registration of Elemental Imaging and Histopathology for Enhanced Spatial Multimodal Analysis of Tissue Sections through TRACE

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.06.583819

N/A

0DataRank · unranked

1 citations

Ramsey Steiner, Serin Han, Aruesha Srivastava, Neha Shaik, Matthew Chan +10 more

CHARTING THE EVOLUTION AND TRANSFORMATIVE IMPACT OF THE PACIFIC SYMPOSIUM ON BIOCOMPUTING THROUGH A 30-YEAR RETROSPECTIVE ANALYSIS OF COLLABORATIVE NETWORKS AND THEMES USING MODERN COMPUTATIONAL TOOLS

PubMed(2024)10.1142/9789819807024_0002

N/A

0DataRank · unranked

1 citations

S.C. Garg, Edward Zhang, Sean McOsker, Carly A. Bobak, Kristine A. Giffin +3 more

Spatially Resolved, Multiregion Proteomics for Prediction of Immunotherapy Outcome in Deficient Mismatch Repair Metastatic Colorectal Cancer

Clinical Cancer Research(2025)10.1158/1078-0432.ccr-24-0853

N/A

0DataRank · unranked

11 citations

Zhenglong Liu, Mariam I. Stein, Will A. Sherman, Christy E. Trussoni, Charles W. Abbott +9 more

Blood Pressure and Late Pregnancy Circulating miRNAs in the MADRES Study

Journal of the American Heart Association(2025)10.1161/jaha.124.040416

N/A

0DataRank · unranked

4 citations

Meghan E. Muse, Zhongzheng Niu, Helen B. Foley, Joshua Levy, Megan E. Romano +8 more

Integration of elemental imaging and spatial transcriptomic profiling for proof-of-concept metals-based pathway analysis of colon tumor microenvironment

Metallomics(2025)10.1093/mtomcs/mfaf034

N/A

0DataRank · unranked

1 citations

Neha Shaik, Yunrui Lu, Matthew Chan, Alos Diallo, John P. Zavras +15 more

Histology-Based Virtual RNA Inference Identifies Pathways Associated with Metastasis Risk in Colorectal Cancer

medRxiv(2025)10.1101/2025.04.22.25326170

N/A

0DataRank · unranked

1 citations

Minh‐Khang Le, Zarif Azher, Xiaoying Liu, Louis Vaickus, Harsimran Kaur +7 more

Multicenter Validation of Video-based Deep Learning to Evaluate Defecation Patterns on 3-dimensional High-definition Anorectal Manometry

Clinical Gastroenterology and Hepatology(2025)10.1016/j.cgh.2025.06.038

N/A

0DataRank · unranked

0 citations

Brian D. Ginnebaugh, David J. Levinthal, Nelson Valentin, Joshua Levy, Eric D. Shah +1 more

MethylNet: an automated and modular deep learning approach for DNA methylation analysis

BMC Bioinformatics(2020)10.1186/s12859-020-3443-8

N/A

0DataRank · unranked

134 citations

Alexander J. Titus, Curtis L. Petersen, Youdinghuan Chen, Lucas A. Salas, Brock C. Christensen +1 more

Histology-Based Virtual RNA Inference Identifies Pathways Associated With Metastasis Risk in Colorectal Cancer

Modern Pathology(2025)10.1016/j.modpat.2025.100866

N/A

0DataRank · unranked

0 citations

Minh‐Khang Le, Zarif Azher, Xiaoying Liu, Louis Vaickus, Harsimran Kaur +7 more

A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies

Modern Pathology(2020)10.1038/s41379-020-00718-1

N/A

0DataRank · unranked

52 citations

Nasim Azizgolshani, Michael J. Andersen, Arief A. Suriawinata, Xiaoying Liu, Mikhail Lisovsky +5 more

PathFlow-MixMatch for Whole Slide Image Registration: An Investigation of a Segment-Based Scalable Image Registration Method

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.22.002402

N/A

0DataRank · unranked

9 citations

Christopher R. Jackson, Christian C. Haudenschild, Brock C. Christensen, Louis Vaickus, Joshua Levy

Investigating the potential for machine learning prediction of patient outcomes: a retrospective study of hospital acquired pressure injuries

medRxiv(2020)10.1101/2020.03.29.20047084

N/A

0DataRank · unranked

5 citations

Jorge F. Lima, Megan W. Miller, Gary L. Freed, A. James O’Malley, Rebecca T. Emeny +1 more

A Large-Scale Internal Validation Study of Unsupervised Virtual Trichrome Staining Technologies on Non-alcoholic Steatohepatitis Liver Biopsies

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.187237

N/A

0DataRank · unranked

4 citations

Nasim Azizgolshani, Michael J. Andersen, Arief A. Suriawinata, Xiaoying Liu, Mikhail Lisovsky +5 more

MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Network, Inspired by Capsule Networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.14.251306

N/A

0DataRank · unranked

2 citations

Youdinghuan Chen, Nasim Azizgolshani, Curtis L. Petersen, Alexander J. Titus, Erika L. Moen +4 more

Using Satellite Images and Deep Learning to Identify Associations Between County-Level Mortality and Residential Neighborhood Features Proximal to Schools: A Cross-Sectional Study

medRxiv(2020)10.1101/2020.10.12.20211755

N/A

0DataRank · unranked

1 citations

Rebecca M. Lebeaux, Anne G. Hoen, Brock C. Christensen, Louis Vaickus, Todd A. MacKenzie +1 more

MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks

npj Systems Biology and Applications(2021)10.1038/s41540-021-00193-7

N/A

0DataRank · unranked

25 citations

Youdinghuan Chen, Nasim Azizgolshani, Curtis L. Petersen, Alexander J. Titus, Erika L. Moen +4 more

DNA 5-hydroxymethylcytosine in pediatric central nervous system tumors may impact tumor classification and is a positive prognostic marker

Clinical Epigenetics(2021)10.1186/s13148-021-01156-9

N/A

0DataRank · unranked

20 citations

Curtis L. Petersen, Youdinghuan Chen, Joshua Levy, Lucas A. Salas, Laurent Perreard +3 more

Bridge Category Models: Development of Bayesian Modelling Procedures to Account for Bridge Ordinal Ratings for Disease Staging

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.17.456726

N/A

0DataRank · unranked

3 citations

Carly A. Bobak, Nasim Azizgolshani, Michael J. Andersen, Arief A. Suriawinata, Xiaoying Liu +6 more

Development of biologically interpretable multimodal deep learning model for cancer prognosis prediction

Proceedings of the 37th ACM/SIGAPP Symposium on Applied Computing(2022)10.1145/3477314.3507032

N/A

0DataRank · unranked

16 citations

Louis Vaickus, Lucas A. Salas, Brock C. Christensen, Joshua Levy, Zarif Azher

ArcticAI: A Deep Learning Platform for Rapid and Accurate Histological Assessment of Intraoperative Tumor Margins

medRxiv(2022)10.1101/2022.05.06.22274781

N/A

0DataRank · unranked

8 citations

Matthew Davis, Rachael Chacko, Michael J. Davis, Lucy Fu, Tarushii Goel +8 more

Assessment of Emerging Pretraining Strategies in Interpretable Multimodal Deep Learning for Cancer Prognostication

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.21.517440

N/A

0DataRank · unranked

2 citations

Anish Suvarna, Ji‐Qing Chen, Ze Zhang, Brock C. Christensen, Lucas A. Salas +3 more

Identification of Spatial Proteomic Signatures of Colon Tumor Metastasis: A Digital Spatial Profiling Approach

medRxiv(2022)10.1101/2022.12.04.22283073

N/A

0DataRank · unranked

2 citations

John P. Zavras, Eren M. Veziroglu, Mustafa Nasir-Moin, Fred Kolling, Brock C. Christensen +10 more

Federated Learning for Multicenter Collaborations of Small Biomedical Research Institutions: A Framework for Navigating Challenges and Realizing Opportunities

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.7368975

N/A

0DataRank · unranked

0 citations

Jeffrey Thompson, Brady Hunt, Arnold Song, Brock C. Christensen, Jason H. Moore +3 more

Inferring Spatially Resolved Transcriptomics Data from Whole Slide Images for the Assessment of Colorectal Tumor Metastasis: A Feasibility Study

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.24.517856

N/A

0DataRank · unranked

0 citations

Eric Feng, Cyril Sharma, Zarif Azher, Tarushii Goel, Ojas A. Ramwala +10 more

Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study

Journal of Pathology Informatics(2023)10.1016/j.jpi.2023.100308

N/A

0DataRank · unranked

23 citations

Eric Feng, Cyril Sharma, Zarif Azher, Tarushii Goel, Ojas A. Ramwala +10 more

Identification of Spatial Proteomic Signatures of Colon Tumor Metastasis

American Journal Of Pathology(2023)10.1016/j.ajpath.2023.02.020

N/A

0DataRank · unranked

21 citations

John P. Zavras, Eren M. Veziroglu, Mustafa Nasir-Moin, Fred Kolling, Brock C. Christensen +10 more

Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication

BioData Mining(2023)10.1186/s13040-023-00338-w

N/A

0DataRank · unranked

19 citations

Anish Suvarna, Jiqing Chen, Ze Zhang, Brock C. Christensen, Lucas A. Salas +3 more

Examining longitudinal markers of bladder cancer recurrence through a semiautonomous machine learning system for quantifying specimen atypia from urine cytology

Cancer Cytopathology(2023)10.1002/cncy.22725

N/A

0DataRank · unranked

14 citations

Natt Chan, Jonathan D. Marotti, Nathalie J. Rodrigues, Abdol Aziz Ould Ismail, Darcy A. Kerr +8 more