Philip C. Bevilacqua

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 27 papers. Top paper: “Cryo-EM study and in vivo chemical mapping of the Methanosarcina acetivorans ribosome and its dimerization via a repurposed enzyme and translation factor”.

Cryo-EM study and in vivo chemical mapping of the Methanosarcina acetivorans ribosome and its dimerization via a repurposed enzyme and translation factor

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110686

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0.175DataRank · unranked

2 citations

Anwesha Ghosh, James G. Ferry, Jean‐Paul Armache, Philip C. Bevilacqua, Katsuhiko Murakami +1 more

CsrA-Mediated Translational Activation of ymdA Expression in Escherichia coli

mBio(2020)10.1128/mbio.00849-20

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32 citations

Stephanie Poly, Ying-Jung Lai, Archana Pannuri, Helen Yakhnin, Anastasia H. Potts +4 more

Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.20.051573

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1 citations

David C. Tack, Helen Yakhnin, Elizabeth A. Jolley, Sarah M. Assmann, Philip C. Bevilacqua +2 more

Native Tertiary Structure and Nucleoside Modifications Suppress tRNA’s Intrinsic Ability to Activate the Innate Immune Sensor PKR

UNC Libraries(2020)10.17615/qxzs-jc36

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0DataRank · unranked

0 citations

Craig E. Cameron, Christie N. Jones, Subba Rao Nallagatla, Saikat Ghosh, Linda Spremulli +2 more

RNA multimerization as an organizing force for liquid–liquid phase separation

RNA(2021)10.1261/rna.078999.121

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61 citations

Allison M. Williams, Hong‐Li Chou, Sarah M. Assmann, Philip C. Bevilacqua

Long Tracts of Guanines Drive Aggregation of RNA G-Quadruplexes in the Presence of Spermine

Biochemistry(2021)10.1021/acs.biochem.1c00467

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12 citations

Raghav R. Poudyal, Philip C. Bevilacqua, Allison M. Williams

The Metabolome Weakens RNA Thermodynamic Stability and Strengthens RNA Chemical Stability

Biochemistry(2022)10.1021/acs.biochem.2c00488

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16 citations

Lauren N. McKinley, Melanie J. Huot, Neela H. Yennawar, Philip C. Bevilacqua, Jacob P. Sieg

Biological solution conditions and flanking sequence modulate LLPS of RNA G-quadruplex structures

RNA(2022)10.1261/rna.079196.122

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12 citations

Taylor M. Dickson, Claudia A. Lagoa-Miguel, Philip C. Bevilacqua, Allison M. Williams

Upstream Flanking Sequence Assists Folding of an RNA Thermometer

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167786

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8 citations

Kathryn M. Bormes, Philip C. Bevilacqua, Elizabeth A. Jolley

Regulatory Mechanisms through RNA Conformational Switching and Dynamics

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167794

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8 citations

Blanton S. Tolbert, Philip C. Bevilacqua

RNA folding studies inside peptide-rich droplets reveal roles of modified nucleosides at the origin of life

Science Advances(2023)10.1126/sciadv.adh5152

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0DataRank · unranked

20 citations

Ryota Yamagami, Saehyun Choi, Christine D. Keating, Philip C. Bevilacqua, McCauley O. Meyer

MeltR software provides facile determination of nucleic acid thermodynamics

Biophysical Reports(2023)10.1016/j.bpr.2023.100101

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15 citations

Sebastian J. Arteaga, Brent M. Znosko, Philip C. Bevilacqua, Jacob P. Sieg

Transcriptome-wide probing reveals RNA thermometers that regulate translation of glycerol permease genes inBacillus subtilis

RNA(2023)10.1261/rna.079652.123

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14 citations

Helen Yakhnin, David C. Tack, Paul Babitzke, Philip C. Bevilacqua, Elizabeth A. Jolley

In vivo-like nearest neighbor parameters improve prediction of fractional RNA base-pairing in cells

Nucleic Acids Research(2023)10.1093/nar/gkad807

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0DataRank · unranked

6 citations

Elizabeth A. Jolley, Melanie J. Huot, Paul Babitzke, Philip C. Bevilacqua, Jacob P. Sieg

Structure-seq of tRNAs and other short RNAs in droplets and in vivo

Methods in enzymology on CD-ROM/Methods in enzymology(2023)10.1016/bs.mie.2023.05.006

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4 citations

Saehyun Choi, Christine D. Keating, Philip C. Bevilacqua, Ryota Yamagami, McCauley O. Meyer

RNA folding studies inside peptide-rich droplets reveal roles of modified nucleosides at the origin of life

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.27.530264

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0DataRank · unranked

3 citations

Ryota Yamagami, Saehyun Choi, Christine D. Keating, Philip C. Bevilacqua, McCauley O. Meyer

The Functional RNA Identification (FRID) Pipeline: Identification of Potential Pseudoknot-Containing RNA Elements as Therapeutic Targets for SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.03.535424

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1 citations

McCauley O. Meyer, Philip C. Bevilacqua, Peter C. Forstmeier

In vivo structure probing of RNA in Archaea : Novel insights into the ribosome structure of Methanosarcina acetivorans

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.14.536875

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1 citations

Elizabeth A. Jolley, Michel Geovanni Santiago‐Martínez, Cheong Xin Chan, Robin R. Gutell, James G. Ferry +2 more

In vivo structure probing of RNA in Archaea : novel insights into the ribosome structure of Methanosarcina acetivorans

RNA(2023)10.1261/rna.079687.123

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0DataRank · unranked

0 citations

Elizabeth A. Jolley, Michel Geovanni Santiago‐Martínez, Cheong Xin Chan, Robin R. Gutell, James G. Ferry +2 more

A new reagent for in vivo structure probing of RNA G and U residues that improves RNA structure prediction alone and combined with DMS

RNA(2024)10.1261/rna.079974.124

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7 citations

Paul Babitzke, Philip C. Bevilacqua, Catherine A. Douds

Direct testing of natural twister ribozymes from over a thousand organisms reveals a broad tolerance for structural imperfections

Nucleic Acids Research(2024)10.1093/nar/gkae908

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0DataRank · unranked

4 citations

McCauley O. Meyer, Aswathy Sebastian, Benjamin K. Chang, Kyle J. Messina, István Albert +2 more

Direct testing of natural twister ribozymes from over a thousand organisms reveals a broad tolerance for structural imperfections

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.11.603121

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0DataRank · unranked

0 citations

McCauley O. Meyer, Aswathy Sebastian, Benjamin K. Chang, Kyle J. Messina, István Albert +2 more

Identification and characterization of shifted G•U wobble pairs resulting from alternative protonation of RNA

Nucleic Acids Research(2025)10.1093/nar/gkaf575

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3 citations

Catherine A. Douds, Andrew J. Veenis, Ashley N Pearson, Neela H. Yennawar, Philip C. Bevilacqua +1 more

VariantFoldRNA: a flexible, containerized, and scalable pipeline for genome-wide riboSNitch prediction

NAR Genomics and Bioinformatics(2025)10.1093/nargab/lqaf066

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0DataRank · unranked

0 citations

Philip C. Bevilacqua, Sarah M. Assmann, Kobie J. Kirven

Prevalence of dual-donating amines in key regions of functional RNAs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.05.658080

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0DataRank · unranked

0 citations

Md. Sharear Saon, Philip C. Bevilacqua, Andrew J. Veenis

Structure-seq2 probing of RNA structure upon amino acid starvation reveals both known and novel RNA switches in Bacillus subtilis

RNA(2020)10.1261/rna.075986.120

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0DataRank · unranked

18 citations

David C. Tack, Helen Yakhnin, Elizabeth A. Jolley, Sarah M. Assmann, Philip C. Bevilacqua +2 more

Correction to “The Metabolome Weakens RNA Thermodynamic Stability and Strengthens RNA Chemical Stability”

Biochemistry(2025)10.1021/acs.biochem.4c00796

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0DataRank · unranked

0 citations

Lauren N. McKinley, Melanie J. Huot, Neela H. Yennawar, Philip C. Bevilacqua, Jacob P. Sieg