David M. Gilbert

Florida State University

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

37.8Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Transcriptional regulatory code of a eukaryotic genome

Nature(2004)10.1038/nature02800

Top 1%

10.6DataRank

Top 1%2201 citations

D. Benjamin Gordon, Tong Ihn Lee, Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford +21 more

Papers

Driven by 49 papers — median percentile 97. Top paper: “Transcriptional regulatory code of a eukaryotic genome”.

Transcriptional regulatory code of a eukaryotic genome

Nature(2004)10.1038/nature02800

Top 1%

10.6DataRank

Top 1%2201 citations

D. Benjamin Gordon, Tong Ihn Lee, Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford +21 more

A comparative encyclopedia of DNA elements in the mouse genome

Nature(2014)10.1038/nature13992

Top 2%

7.9DataRank

Top 2%1946 citations

Yong Cheng, Alessandra Breschi, Jost Vielmetter, Weisheng Wu, Tyrone Ryba +150 more

Defining functional DNA elements in the human genome

Proceedings of the National Academy of Sciences(2014)10.1073/pnas.1318948111

Top 3%

6.9DataRank

Top 3%755 citations

Valentina Snetkova, Louis Philip Benoit Bouvrette, Anshul Kundaje, Georgi K. Marinov, Lucas D. Ward +29 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w

Top 5%

4.1DataRank

Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

Local rewiring of genome–nuclear lamina interactions by transcription

The EMBO Journal(2020)10.15252/embj.2019103159

N/A

2.0DataRank · unranked

103 citations

Peiyao A Zhao, Tom van Schaik, Christ Leemans, Jiao Sima, Daniel Peric‐Hupkes +3 more

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

1.7DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

Predicting gene expression in massively parallel reporter assays: A comparative study

Human Mutation(2017)10.1002/humu.23197

N/A

1.7DataRank · unranked

52 citations

Haoyang Zeng, Matthew D. Edwards, Gamze Gürsoy, Kevin Tian, R. Alan Harris +20 more

Complete sequencing of ape genomes

Nature(2025)10.1038/s41586-025-08816-3

Top 16%

1.3DataRank

Top 16%128 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Cohesin depleted cells rebuild functional nuclear compartments after endomitosis

Nature Communications(2020)10.1038/s41467-020-19876-6

N/A

1.3DataRank · unranked

62 citations

Katharina Brandstetter, Andreas Maiser, Suhas S.P. Rao, Volker Schmid, Miguel Guirao‐Ortiz +10 more

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

Nature Genetics(2007)10.1038/ng2047

N/A

0.940DataRank · unranked

526 citations

Robin D. Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W. Danford, Kenzie D. Macisaac +7 more

Dynamic chromosomal interactions and control of heterochromatin positioning by Ki‐67

EMBO Reports(2022)10.15252/embr.202255782

N/A

0.851DataRank · unranked

39 citations

Stefano Giustino Manzo, Athanasios E Vouzas, Ning Qing Liu, Hans Teunissen, Elzo de Wit +3 more

SARS-CoV-2 restructures host chromatin architecture

Nature Microbiology(2023)10.1038/s41564-023-01344-8

N/A

0.692DataRank · unranked

100 citations

Joo‐Hyung Lee, Jieun Kim, Feng Xiong, Lana Al Hasani, Yuqiang Shi +11 more

Complete sequencing of ape genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.31.605654

Top 34%

0.582DataRank

Top 34%26 citations

Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar +123 more

Major nuclear locales define nuclear genome organization and function beyond A and B compartments

eLife(2024)10.7554/elife.99116

N/A

0.491DataRank · unranked

14 citations

Tom van Schaik, Yuchuan Wang, Pradeep Kumar, Liguo Zhang, Yang Zhang +8 more

Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.23.590809

N/A

0.208DataRank · unranked

3 citations

Tom van Schaik, Yuchuan Wang, Pradeep Kumar, Liguo Zhang, Yang Zhang +8 more

Epigenetic control of chromosome-associated lncRNA genes essential for replication and stability

Nature Communications(2022)10.1038/s41467-022-34099-7

N/A

0DataRank · unranked

32 citations

Athanasios E Vouzas, Leslie G. Smith, Phillip A. Yates, Christopher Boniface, Eric E. Bouhassira +4 more

Mapping Replication Timing in Single Mammalian Cells

Current Protocols(2022)10.1002/cpz1.334

N/A

0DataRank · unranked

12 citations

Vishnu Dileep, Timour Baslan, David M. Gilbert, Daniel A. Bartlett

Epigenetic Control of Hundreds of Chromosome-Associated lncRNA Genes Essential for Replication and Stability

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.25.489405

N/A

0DataRank · unranked

0 citations

Athanasios E Vouzas, Leslie Smith, Phillip A. Yates, Christopher Boniface, Eric E. Bouhassira +4 more

Emergence of replication timing during early mammalian development

Nature(2023)10.1038/s41586-023-06872-1

N/A

0DataRank · unranked

59 citations

Tamás Schauer, Luis Altamirano‐Pacheco, Kyle N. Klein, Andreas Ettinger, Mrinmoy Pal +3 more

Replication timing and transcriptional control: beyond cause and effect — part IV

Current Opinion in Genetics & Development(2023)10.1016/j.gde.2023.102031

N/A

0DataRank · unranked

34 citations

David M. Gilbert, Athanasios E Vouzas

SHIELD: a platform for high-throughput screening of barrier-type DNA elements in human cells

Nature Communications(2023)10.1038/s41467-023-41468-3

N/A

0DataRank · unranked

10 citations

Mary Elisabeth Ehmann, Srija Matukumalli, Aashutosh Girish Boob, David M. Gilbert, Huimin Zhao +1 more

Transposase expression, element abundance, element size, and DNA repair determine the mobility and heritability of PIF/Pong/Harbinger transposable elements

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1184046

N/A

0DataRank · unranked

9 citations

Lisette Payero, David M. Gilbert, Clinton A. Page, Reese King, Edward V. McAssey +4 more

Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.564613

N/A

0DataRank · unranked

4 citations

Omid Gholamalamdari, Yang Zhang, Liguo Zhang, Anastassiia Vertii, Tom van Schaik +8 more

Brd2 is dispensable for genome compartmentalization and replication timing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.17.567572

N/A

0DataRank · unranked

2 citations

Jesse L. Turner, Takayo Sasaki, Ferhat Ay, David M. Gilbert, Laura Hinojosa-Gonzalez

Linear Interaction Between Replication and Transcription Shapes DNA Break Dynamics at Recurrent DNA Break Clusters

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.22.554340

N/A

0DataRank · unranked

0 citations

Vivien Ionasz, Sergej Andrejev, Li-Chin Wang, Athanasios E Vouzas, Marco Giaisi +8 more

Linear interaction between replication and transcription shapes DNA break dynamics at recurrent DNA break Clusters

Nature Communications(2024)10.1038/s41467-024-47934-w

N/A

0DataRank · unranked

12 citations

Vivien Ionasz, Sergej Andrejev, Li-Chin Wang, Athanasios E Vouzas, Marco Giaisi +8 more

Major nuclear locales define nuclear genome organization and function beyond A and B compartments

eLife(2025)10.7554/elife.99116.4

N/A

0DataRank · unranked

11 citations

Tom van Schaik, Yuchuan Wang, Pradeep Kumar, Liguo Zhang, Yang Zhang +8 more

Centromeric transposable elements and epigenetic status drive karyotypic variation in the eastern hoolock gibbon

Cell Genomics(2025)10.1016/j.xgen.2025.100808

N/A

0DataRank · unranked

10 citations

Mariam Okhovat, Savannah J. Hoyt, Emily Fuller, Nicole Pauloski, Nicolas Alexandre +18 more

Master transcription-factor binding sites constitute the core of early replication control elements

The EMBO Journal(2025)10.1038/s44318-025-00501-5

N/A

0DataRank · unranked

5 citations

Laura Hinojosa-Gonzalez, Takayo Sasaki, Satoshi Uchino, Athanasios E Vouzas, Mariella S Soto +7 more

RIF1 controls replication timing in early mouse embryos independently of lamina-associated nuclear organization

Developmental Cell(2025)10.1016/j.devcel.2025.03.016

N/A

0DataRank · unranked

4 citations

Tamás Schauer, Mrinmoy Pal, Andreas Ettinger, Luis Altamirano‐Pacheco, Julia Zorn +3 more

Transcription can be sufficient, but is not necessary, to advance replication timing

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.04.636516

N/A

0DataRank · unranked

4 citations

Takayo Sasaki, Juan Carlos Rivera-Mulia, Jesse L. Turner, Amber N. Brown, Karen E. Alexander +4 more

Author response: Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function

(2025)10.7554/elife.99116.2.sa0

N/A

0DataRank · unranked

0 citations

Tom van Schaik, Yuchuan Wang, Pradeep Kumar, Liguo Zhang, Yang Zhang +8 more

Autosomal Allelic Inactivation: Variable Replication and Dosage Sensitivity

eLife(2025)10.1101/2025.08.13.670061

N/A

0DataRank · unranked

0 citations

Athanasios E Vouzas, Brian Johnstone, Krister Freese, Phil Yates, Philip F. Copenhaver +4 more

High-resolution Repli-Seq defines the temporal choreography of initiation, elongation and termination of replication in mammalian cells

Genome biology(2020)10.1186/s13059-020-01983-8

N/A

0DataRank · unranked

180 citations

Takayo Sasaki, David M. Gilbert, Peiyao A Zhao

3D genome organization contributes to genome instability at fragile sites

Nature Communications(2020)10.1038/s41467-020-17448-2

N/A

0DataRank · unranked

76 citations

Takayo Sasaki, Michal Irony Tur-Sinai, Karin Miron, Juan Carlos Rivera-Mulia, Brian Magnuson +4 more

SPIN reveals genome-wide landscape of nuclear compartmentalization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.09.982967

N/A

0DataRank · unranked

19 citations

Yang Zhang, Ruochi Zhang, Tom van Schaik, Liguo Zhang, Takayo Sasaki +7 more

Genome-Wide Mapping of Human DNA Replication by Optical Replication Mapping Supports a Stochastic Model of Eukaryotic Replication

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.24.263459

N/A

0DataRank · unranked

18 citations

Kyle N. Klein, Karel Proesmans, Hongbo Yang, Claire Marchal, Xiaopeng Zhu +8 more

Catalytically Enhanced Cas9 through Directed Protein Evolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.01.183194

N/A

0DataRank · unranked

3 citations

Mitchell O. Roth, Chardasia L. Smith, Emily Shiel, Kyle N. Klein, David M. Gilbert +2 more

Replication timing maintains the global epigenetic state in human cells

Science(2021)10.1126/science.aba5545

N/A

0DataRank · unranked

174 citations

Peiyao A Zhao, Xiaowen Lyu, Takayo Sasaki, Daniel A. Bartlett, Amar M. Singh +15 more

SPIN reveals genome-wide landscape of nuclear compartmentalization

Genome biology(2021)10.1186/s13059-020-02253-3

N/A

0DataRank · unranked

134 citations

Yang Zhang, Ruochi Zhang, Tom van Schaik, Liguo Zhang, Takayo Sasaki +7 more

Genome-wide mapping of human DNA replication by optical replication mapping supports a stochastic model of eukaryotic replication

Molecular Cell(2021)10.1016/j.molcel.2021.05.024

N/A

0DataRank · unranked

115 citations

Kyle N. Klein, Karel Proesmans, Hongbo Yang, Claire Marchal, Xiaopeng Zhu +8 more

Nuclear organisation and replication timing are coupled through RIF1–PP1 interaction

Nature Communications(2021)10.1038/s41467-021-22899-2

N/A

0DataRank · unranked

57 citations

Ilya M. Flyamer, Kyle N. Klein, Eleonora Castelli, Alexander Rapp, Andreas Maiser +8 more

High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)

The Journal of Cell Biology(2021)10.1083/jcb.202103078

N/A

0DataRank · unranked

50 citations

Vishnu Dileep, Tetsuya Handa, Yasuyuki Ohkawa, Hiroshi Kimura, Steven Henikoff +2 more

Mammalian DNA Replication Timing

Cold Spring Harbor Perspectives in Biology(2021)10.1101/cshperspect.a040162

N/A

0DataRank · unranked

75 citations

David M. Gilbert, Athanasios E Vouzas

Cohesin-mediated loop anchors confine the location of human replication origins

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.05.425437

N/A

0DataRank · unranked

11 citations

Peiyao A Zhao, Kyle N. Klein, Chunmin Ge, Linda Zhou, Takayo Sasaki +7 more

High throughput genome-wide single cell protein:DNA binding site mapping by targeted insertion of promoters (TIP-seq)

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.17.435909

N/A

0DataRank · unranked

7 citations

Vishnu Dileep, Steven Henikoff, David M. Gilbert, Daniel A. Bartlett

Dynamic chromosomal interactions and control of heterochromatin positioning by Ki-67

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.20.465140

N/A

0DataRank · unranked

3 citations

Stefano Giustino Manzo, Athanasios E Vouzas, Ning Qing Liu, Hans Teunissen, Elzo de Wit +3 more

Cohesin-mediated loop anchors confine the locations of human replication origins

Nature(2022)10.1038/s41586-022-04803-0

N/A

0DataRank · unranked

131 citations

Peiyao A Zhao, Ashley L. Cook, R. Jordan Barnett, Kyle N. Klein, Dalila Saulebekova +20 more

David M. Gilbert

Indexed papers

Top data-sharing exemplar

Papers