Guo‐Wei Wei

Also affiliated with Michigan State University

Computer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 65 papers. Top paper: “Mutations on COVID-19 diagnostic targets”.

Mutations on COVID-19 diagnostic targets

Genomics(2020)10.1016/j.ygeno.2020.09.028

N/A

11.3DataRank · unranked

221 citations

Yuta Hozumi, Changchuan Yin, Guo‐Wei Wei, Rui Wang

Analysis of SARS-CoV-2 mutations in the United States suggests presence of four substrains and novel variants

Communications Biology(2021)10.1038/s42003-021-01754-6

N/A

6.8DataRank · unranked

188 citations

Jiahui Chen, Kaifu Gao, Yuta Hozumi, Changchuan Yin, Guo‐Wei Wei +1 more

UMAP-assisted K-means clustering of large-scale SARS-CoV-2 mutation datasets

Computers in Biology and Medicine(2021)10.1016/j.compbiomed.2021.104264

N/A

3.9DataRank · unranked

119 citations

Rui Wang, Changchuan Yin, Guo‐Wei Wei, Yuta Hozumi

A topology-based network tree for the prediction of protein–protein binding affinity changes following mutation

Nature Machine Intelligence(2020)10.1038/s42256-020-0149-6

N/A

0.810DataRank · unranked

221 citations

Zixuan Cang, Guo‐Wei Wei, Menglun Wang

Are 2D fingerprints still valuable for drug discovery?

Physical Chemistry Chemical Physics(2020)10.1039/d0cp00305k

N/A

0.747DataRank · unranked

144 citations

Duc Duy Nguyen, Vishnu Sresht, Alan M. Mathiowetz, Meihua Tu, Guo‐Wei Wei +1 more

Structural insights into the elevator-type transport mechanism of a bacterial ZIP metal transporter

Nature Communications(2023)10.1038/s41467-023-36048-4

N/A

0.557DataRank · unranked

40 citations

Yuhan Jiang, Kaifu Gao, Dexin Sui, Peixuan Yu, Min Su +3 more

Persistent Topological Laplacians—A Survey

Mathematics(2025)10.3390/math13020208

N/A

0.457DataRank · unranked

20 citations

Guo‐Wei Wei, Xiaoqi Wei

Rapid response to fast viral evolution using AlphaFold 3-assisted topological deep learning

Virus Evolution(2025)10.1093/ve/veaf026

N/A

0.373DataRank · unranked

11 citations

Guo‐Wei Wei, JunJie Wee

Persistent Topological Laplacian Analysis of SARS-CoV-2 Variants

Journal of Computational Biophysics and Chemistry(2023)10.1142/s2737416523500278

N/A

0.345DataRank · unranked

9 citations

Jiahui Chen, Guo‐Wei Wei, Xiaoqi Wei

Enhancing energy predictions in multi-atom systems with multiscale topological learning

Journal of Materials Chemistry A(2025)10.1039/d5ta02687c

N/A

0.241DataRank · unranked

4 citations

Rui Wang, Guo‐Wei Wei, Feng Pan, Dong Chen

Charge substitutions at the voltage-sensing module of domain III enhance actions of site-3 and site-4 toxins on an insect sodium channel

Insect Biochemistry and Molecular Biology(2021)10.1016/j.ibmb.2021.103625

N/A

0.241DataRank · unranked

4 citations

Yuzhe Du, Yoshiko Nomura, Rong Gao, Zixuan Cang, Guo‐Wei Wei +5 more

Interaction homotopy and interaction homology

arXiv (Cornell University)(2023)10.48550/arxiv.2311.16322

N/A

0.104DataRank · unranked

1 citations

Dong Chen, Guo‐Wei Wei, Jian Liu

Modeling the Effects of Calcium Overload on Mitochondrial Ultrastructural Remodeling

Applied Sciences(2021)10.3390/app11052071

N/A

0DataRank · unranked

35 citations

Jiahui Chen, Benjamin West, Kristin N. Parent, Guo‐Wei Wei, Jason N. Bazil +1 more

SARS-CoV-2 becoming more infectious as revealed by algebraic topology and deep learning

Communications in Information and Systems(2021)10.4310/cis.2021.v21.n1.a2

N/A

0DataRank · unranked

4 citations

Rui Wang, Guo‐Wei Wei, Jiahui Chen

Revealing the threat of emerging SARS-CoV-2 mutations to antibody therapies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.12.439473

N/A

0DataRank · unranked

21 citations

Kaifu Gao, Rui Wang, Guo‐Wei Wei, Jiahui Chen

Algebraic Graph-assisted Bidirectional Transformers for Molecular Prediction

Research Square(2021)10.21203/rs.3.rs-152856/v1

N/A

0DataRank · unranked

1 citations

Kaifu Gao, Duc Duy Nguyen, Xin Chen, Yi Jiang, Guo‐Wei Wei +2 more

Persistent Laplacian projected Omicron BA.4 and BA.5 to become new dominating variants

Computers in Biology and Medicine(2022)10.1016/j.compbiomed.2022.106262

N/A

0DataRank · unranked

74 citations

Yuchi Qiu, Rui Wang, Guo‐Wei Wei, Jiahui Chen

Virtual screening of DrugBank database for hERG blockers using topological Laplacian-assisted AI models

Computers in Biology and Medicine(2022)10.1016/j.compbiomed.2022.106491

N/A

0DataRank · unranked

33 citations

Guo‐Wei Wei, Hongsong Feng

Persistent path Laplacian

Foundations of Data Science(2022)10.3934/fods.2022015

N/A

0DataRank · unranked

26 citations

Guo‐Wei Wei, Rui Wang

Biomolecular Topology: Modelling and Analysis

Acta Mathematica Sinica English Series(2022)10.1007/s10114-022-2326-5

N/A

0DataRank · unranked

7 citations

Kelin Xia, Jie Wu, Stephen S.‐T. Yau, Guo‐Wei Wei, Jian Liu

Omicron BA.2 (B.1.1.529.2): high potential to becoming the next dominating variant

Research Square(2022)10.21203/rs.3.rs-1362445/v1

N/A

0DataRank · unranked

69 citations

Guo‐Wei Wei, Jiahui Chen

Structural insights into the elevator-type transport mechanism of a bacterial ZIP metal transporter

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.14.508043

N/A

0DataRank · unranked

3 citations

Yuhan Jiang, Kaifu Gao, Dexin Sui, Peixuan Yu, Min Su +3 more

Artificial intelligence-aided protein engineering: from topological data analysis to deep protein language models

Briefings in Bioinformatics(2023)10.1093/bib/bbad289

N/A

0DataRank · unranked

78 citations

Guo‐Wei Wei, Yuchi Qiu

Machine-learning repurposing of DrugBank compounds for opioid use disorder

Computers in Biology and Medicine(2023)10.1016/j.compbiomed.2023.106921

N/A

0DataRank · unranked

31 citations

Jian Jiang, Guo‐Wei Wei, Hongsong Feng

Persistent hyperdigraph homology and persistent hyperdigraph Laplacians

Foundations of Data Science(2023)10.3934/fods.2023010

N/A

0DataRank · unranked

27 citations

Jian Liu, Jie Wu, Guo‐Wei Wei, Dong Chen

Machine-learning analysis of opioid use disorder informed by MOR, DOR, KOR, NOR and ZOR-based interactome networks

Computers in Biology and Medicine(2023)10.1016/j.compbiomed.2023.106745

N/A

0DataRank · unranked

19 citations

Rana Elladki, Jiang Jian, Guo‐Wei Wei, Hongsong Feng

Topological deep learning based deep mutational scanning

Computers in Biology and Medicine(2023)10.1016/j.compbiomed.2023.107258

N/A

0DataRank · unranked

17 citations

Daniel Woldring, Faqing Huang, Xuefei Huang, Guo‐Wei Wei, Jiahui Chen

Deep learning-enabled quantification of simultaneous PET/MRI for cell transplantation monitoring

iScience(2023)10.1016/j.isci.2023.107083

N/A

0DataRank · unranked

4 citations

Rui Wang, Aixia Sun, Christiane L. Mallett, Saumya Nigam, Nathan Redman +10 more

Persistent Dirac of Path and Hypergraph

arXiv (Cornell University)(2023)10.48550/arxiv.2311.14893

N/A

0DataRank · unranked

2 citations

Guo‐Wei Wei, Faisal Suwayyid

K-Nearest-Neighbors Induced Topological PCA for scRNA Sequence Data Analysis

PubMed(2023)10.48550/arxiv.2310.14521

N/A

0DataRank · unranked

1 citations

Yuta Hozumi, Guo‐Wei Wei, Sean Cottrell

Transformer technology in molecular science

Wiley Interdisciplinary Reviews Computational Molecular Science(2024)10.1002/wcms.1725

N/A

0DataRank · unranked

58 citations

Ke Lü, Long Chen, Bozheng Dou, Yueying Zhu, Jie Liu +4 more

Multiscale topology-enabled structure-to-sequence transformer for protein–ligand interaction predictions

Nature Machine Intelligence(2024)10.1038/s42256-024-00855-1

N/A

0DataRank · unranked

50 citations

Jian Liu, Guo‐Wei Wei, Dong Chen

Integration of persistent Laplacian and pre-trained transformer for protein solubility changes upon mutation

Computers in Biology and Medicine(2024)10.1016/j.compbiomed.2024.107918

N/A

0DataRank · unranked

19 citations

Jiahui Chen, Kelin Xia, Guo‐Wei Wei, JunJie Wee

Persistent Dirac of paths on digraphs and hypergraphs

Foundations of Data Science(2024)10.3934/fods.2024001

N/A

0DataRank · unranked

19 citations

Guo‐Wei Wei, Faisal Suwayyid

K-nearest-neighbors induced topological PCA for single cell RNA-sequence data analysis

Computers in Biology and Medicine(2024)10.1016/j.compbiomed.2024.108497

N/A

0DataRank · unranked

19 citations

Yuta Hozumi, Guo‐Wei Wei, Sean Cottrell

Persistent Mayer homology and persistent Mayer Laplacian

Foundations of Data Science(2024)10.3934/fods.2024032

N/A

0DataRank · unranked

15 citations

Jian Liu, Guo‐Wei Wei, Li Shen

Analyzing scRNA-seq data by CCP-assisted UMAP and tSNE

PLoS ONE(2024)10.1371/journal.pone.0311791

N/A

0DataRank · unranked

10 citations

Guo‐Wei Wei, Yuta Hozumi

Combinatorial and Hodge Laplacians: Similarities and Differences

SIAM Review(2024)10.1137/22m1482299

N/A

0DataRank · unranked

9 citations

Rui Wang, Jiahui Chen, Yiying Tong, Guo‐Wei Wei, Emily Ribando-Gros

Multiscale differential geometry learning of networks with applications to single-cell RNA sequencing data

Computers in Biology and Medicine(2024)10.1016/j.compbiomed.2024.108211

N/A

0DataRank · unranked

8 citations

Sean Cottrell, Yuta Hozumi, Guo‐Wei Wei, Hongsong Feng

Persistent Mayer Dirac

Journal of Physics Complexity(2024)10.1088/2632-072x/ad83a5

N/A

0DataRank · unranked

8 citations

Guo‐Wei Wei, Faisal Suwayyid

Preventing future zoonosis: SARS-CoV-2 mutations enhance human–animal cross-transmission

Computers in Biology and Medicine(2024)10.1016/j.compbiomed.2024.109101

N/A

0DataRank · unranked

7 citations

Jiahui Chen, Guo‐Wei Wei, JunJie Wee

Graph-Based Bidirectional Transformer Decision Threshold Adjustment Algorithm for Class-Imbalanced Molecular Data

Journal of Computational Biophysics and Chemistry(2024)10.1142/s2737416524500479

N/A

0DataRank · unranked

5 citations

Ekaterina Merkurjev, Guo‐Wei Wei, Nicole Hayes

TopoFormer: Multiscale Topology-enabled Structure-to-Sequence Transformer for Protein-Ligand Interaction Predictions

Research Square(2024)10.21203/rs.3.rs-3640878/v1

N/A

0DataRank · unranked

2 citations

Dong Chen, Jian Liu, Guo‐Wei Wei

A Khovanov Laplacian and Khovanov Dirac for Knots and Links

arXiv (Cornell University)(2024)10.48550/arxiv.2411.18841

N/A

0DataRank · unranked

1 citations

Guo‐Wei Wei, Benjamin F. Jones

Persistent Directed Flag Laplacian (PDFL)-Based Machine Learning for Protein-Ligand Binding Affinity Prediction

arXiv (Cornell University)(2024)10.48550/arxiv.2411.02596

N/A

0DataRank · unranked

0 citations

Benjamin Jones, Hongsong Feng, Guo‐Wei Wei, Mushal Zia

A review of machine learning methods for imbalanced data challenges in chemistry

Chemical Science(2025)10.1039/d5sc00270b

N/A

0DataRank · unranked

50 citations

Chunhuan Zhang, Ke Lü, Nicole Hayes, Yueying Zhu, Huahai Qiu +4 more

Category-specific topological learning of metal–organic frameworks

Journal of Materials Chemistry A(2025)10.1039/d4ta08877h

N/A

0DataRank · unranked

9 citations

Chun‐Long Chen, Guo‐Wei Wei, Dong Chen

Artificial intelligence approaches for anti-addiction drug discovery

Digital Discovery(2025)10.1039/d5dd00032g

N/A

0DataRank · unranked

4 citations

Jian Jiang, Nicole Hayes, Zhe Su, Guo‐Wei Wei, Dong Chen

CAP: Commutative algebra prediction of protein-nucleic acid binding affinities

Machine Learning Science and Technology(2025)10.1088/2632-2153/ae29bc

N/A

0DataRank · unranked

2 citations

Faisal Suwayyid, Yuta Hozumi, JunJie Wee, Hongsong Feng, Guo‐Wei Wei +1 more

Persistent Stanley–Reisner theory

Foundations of Data Science(2025)10.3934/fods.2025009

N/A

0DataRank · unranked

3 citations

Guo‐Wei Wei, Faisal Suwayyid

Topological Sequence Analysis of Genomes: Category Theory Approaches

Journal of Computational Biophysics and Chemistry(2025)10.1142/s2737416526400016

N/A

0DataRank · unranked

3 citations

Li Shen, Mushal Zia, Guo‐Wei Wei, Jian Liu

Topology-preserving Hodge decomposition in the Eulerian representation

Beijing Journal of Pure and Applied Mathematics(2025)10.4310/bpam.250908175047

N/A

0DataRank · unranked

2 citations

Yiying Tong, Guo‐Wei Wei, Zhe Su

PLNet : Persistent Laplacian neural network for protein–protein binding free energy prediction

Protein Science(2025)10.1002/pro.70377

N/A

0DataRank · unranked

1 citations

Chunmei Wang, Guo‐Wei Wei, Jiahui Chen, Xingjian Xu

Topological magnitude for protein flexibility analysis

Royal Society Open Science(2025)10.1098/rsos.251599

N/A

0DataRank · unranked

0 citations

Hongsong Feng, Jie Wu, Jingyan Li, Guo‐Wei Wei, Wanying Bi

Mutations Strengthened SARS-CoV-2 Infectivity

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.07.009

N/A

0DataRank · unranked

515 citations

Rui Wang, Menglun Wang, Guo‐Wei Wei, Jiahui Chen

Host Immune Response Driving SARS-CoV-2 Evolution

Viruses(2020)10.3390/v12101095

N/A

0DataRank · unranked

87 citations

Yuta Hozumi, Yong‐Hui Zheng, Changchuan Yin, Guo‐Wei Wei, Rui Wang

Unveiling the molecular mechanism of SARS-CoV-2 main protease inhibition from 137 crystal structures using algebraic topology and deep learning

Chemical Science(2020)10.1039/d0sc04641h

N/A

0DataRank · unranked

82 citations

Kaifu Gao, Jiahui Chen, Rui Wang, Guo‐Wei Wei, Duc Duy Nguyen

Persistent Cohomology for Data With Multicomponent Heterogeneous Information

SIAM Journal on Mathematics of Data Science(2020)10.1137/19m1272226

N/A

0DataRank · unranked

18 citations

Guo‐Wei Wei, Zixuan Cang

Review of COVID-19 Antibody Therapies

Annual Review of Biophysics(2020)10.1146/annurev-biophys-062920-063711

N/A

0DataRank · unranked

40 citations

Kaifu Gao, Rui Wang, Duc Duy Nguyen, Guo‐Wei Wei, Jiahui Chen

Characterizing SARS-CoV-2 mutations in the United States

Research Square(2020)10.21203/rs.3.rs-49671/v1

N/A

0DataRank · unranked

54 citations

Jiahui Chen, Kaifu Gao, Yuta Hozumi, Changchuan Yin, Guo‐Wei Wei +1 more

Vaccine-escape and fast-growing mutations in the United Kingdom, the United States, Singapore, Spain, India, and other COVID-19-devastated countries

Genomics(2021)10.1016/j.ygeno.2021.05.006

N/A

0DataRank · unranked

216 citations

Jiahui Chen, Kaifu Gao, Guo‐Wei Wei, Rui Wang

Algebraic graph-assisted bidirectional transformers for molecular property prediction

Nature Communications(2021)10.1038/s41467-021-23720-w

N/A

0DataRank · unranked

173 citations

Kaifu Gao, Duc Duy Nguyen, Xin Chen, Yi Jiang, Guo‐Wei Wei +2 more

Prediction and mitigation of mutation threats to COVID-19 vaccines and antibody therapies

Chemical Science(2021)10.1039/d1sc01203g

N/A

0DataRank · unranked

118 citations

Kaifu Gao, Rui Wang, Guo‐Wei Wei, Jiahui Chen

Topological representations of crystalline compounds for the machine-learning prediction of materials properties

npj Computational Materials(2021)10.1038/s41524-021-00493-w

N/A

0DataRank · unranked

111 citations

Dong Chen, Xin Chen, Tangyi Li, Guo‐Wei Wei, Feng Pan +1 more

Revealing the Threat of Emerging SARS-CoV-2 Mutations to Antibody Therapies

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.167155

N/A

0DataRank · unranked

70 citations

Kaifu Gao, Rui Wang, Guo‐Wei Wei, Jiahui Chen