🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Marcin P. Joachimiak

Lawrence Berkeley National Laboratory

ORCID: 0000-0001-8175-045X
Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
4.8Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

Patterns(2020)10.1016/j.patter.2020.100155
Top 7%
3.3DataRank
Top 7%95 citations

Deepak R Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon +13 more

Papers

Driven by 19 papers — median percentile 85. Top paper: “KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response”.

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

Patterns(2020)10.1016/j.patter.2020.100155
Top 7%
3.3DataRank
Top 7%95 citations

Deepak R Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon +13 more

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

mSystems(2021)10.1128/msystems.01194-20
N/A
2.0DataRank · unranked
72 citations

Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg +37 more

An open source knowledge graph ecosystem for the life sciences

Scientific Data(2024)10.1038/s41597-024-03171-w
Top 15%
1.4DataRank
Top 15%63 citations

Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M Wyrwa +27 more

AI-readiness Criteria for Biomedical Data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.23.619844
N/A
1.2DataRank · unranked
24 citations

J. Harry Caufield, Jillian A. Parker, Mohammad Sadnan Al Manir, Edilberto Amorim, James A. Eddy +26 more

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

Journal of Biomedical Semantics(2024)10.1186/s13326-024-00320-3
N/A
0.584DataRank · unranked
48 citations

Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh C Carmody +25 more

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)

arXiv (Cornell University)(2023)10.48550/arxiv.2312.10904
N/A
0.312DataRank · unranked
7 citations

Anna V. Anagnostopoulos, S. Bello, Kai Blumberg, Rhiannon Cameron, Leigh C Carmody +25 more

An Open-Source Knowledge Graph Ecosystem for the Life Sciences

Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)(2023)10.48550/arxiv.2307.05727
Top 78%
0.104DataRank
Top 78%1 citations

Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M Wyrwa +27 more

GRAPE for fast and scalable graph processing and random-walk-based embedding

Nature Computational Science(2023)10.1038/s43588-023-00465-8
N/A
0DataRank · unranked
32 citations

Tommaso Fontana, Elena Casiraghi, Vida Ravanmehr, Tiffany J. Callahan, Carlos Cano +6 more

Gene Set Summarization using Large Language Models

arXiv (Cornell University)(2023)10.48550/arxiv.2305.13338
N/A
0DataRank · unranked
7 citations

J. Harry Caufield, Nomi L. Harris, Kim, Hyeongsik, Mungall, Christopher J., Marcin P. Joachimiak

KG-Hub—building and exchanging biological knowledge graphs

Bioinformatics(2023)10.1093/bioinformatics/btad418
N/A
0DataRank · unranked
35 citations

Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J. Callahan +21 more

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

arXiv (Cornell University)(2023)10.48550/arxiv.2302.10800
N/A
0DataRank · unranked
0 citations

Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J. Callahan +21 more

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning

Bioinformatics(2024)10.1093/bioinformatics/btae104
N/A
0DataRank · unranked
105 citations

Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas A Matentzoglu +7 more

GraPE: fast and scalable Graph Processing and Embedding

Research Square(2022)10.21203/rs.3.rs-967145/v1
N/A
0DataRank · unranked
5 citations

Tommaso Fontana, Elena Casiraghi, Vida Ravanmehr, Tiffany J. Callahan, Marcin P. Joachimiak +5 more

Integrating biological knowledge for mechanistic inference in the host-associated microbiome

Frontiers in Microbiology(2024)10.3389/fmicb.2024.1351678
N/A
0DataRank · unranked
5 citations

Madison Apgar, Angela Sofia Burkhart Colorado, Casey Martin, John Sterrett, Elena S. Wall +4 more

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.11.447943
N/A
0DataRank · unranked
1 citations

Hannah Blau, Luca Cappelletti, Tommaso Fontana, Leigh C Carmody, Ben D Coleman +12 more

Supervised learning with word embeddings derived from PubMed captures latent knowledge about protein kinases and cancer

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab113
N/A
0DataRank · unranked
7 citations

Hannah Blau, Luca Cappelletti, Tommaso Fontana, Leigh C Carmody, Ben D Coleman +13 more

CurateGPT: A flexible language-model assisted biocuration tool

arXiv (Cornell University)(2024)10.48550/arxiv.2411.00046
N/A
0DataRank · unranked
8 citations

Carlo Kroll, Shawn T. O’Neil, Justin T Reese, Marcin P. Joachimiak, Harshad Hegde +8 more

Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104341
N/A
0DataRank · unranked
28 citations

Tiffany J. Callahan, Mary F. Paine, Sandra L. Kane‐Gill, Halil Kilicoglu, Marcin P. Joachimiak +2 more

Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery

UNC Libraries(2024)10.17615/1tsk-ff12
N/A
0DataRank · unranked
0 citations

Amy Yates, Leigh C Carmody, Emily Pfaff, Christopher G. Chute, Hao Xu +25 more