Rui Zhang

Also affiliated with University of Minnesota, Zhejiang Sci-Tech University, Tianjin University of Technology, Southwest University, Nankai University, Tarim University, Twin Cities Orthopedics, University of Minnesota Medical Center, Dahua Technology (China), Changchun University of Technology

Computer ScienceBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.6Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Biomedical discovery through the integrative biomedical knowledge hub (iBKH)

iScience(2023)10.1016/j.isci.2023.106460

Top 21%

0.966DataRank

Top 21%31 citations

Yu Hou, Manqi Zhou, Suraj Rajendran, Jacqueline R. M. A. Maasch, Zehra Abedi +14 more

Papers

Driven by 52 papers — median percentile 68. Top paper: “Benchmarking large language models for biomedical natural language processing applications and recommendations”.

Benchmarking large language models for biomedical natural language processing applications and recommendations

Nature Communications(2025)10.1038/s41467-025-56989-2

N/A

2.5DataRank · unranked

139 citations

Yan Hu, Xueqing Peng, Qianqian Xie, Qiao Jin, Aidan Gilson +16 more

Biomedical discovery through the integrative biomedical knowledge hub (iBKH)

iScience(2023)10.1016/j.isci.2023.106460

Top 21%

0.966DataRank

Top 21%31 citations

Yu Hou, Manqi Zhou, Suraj Rajendran, Jacqueline R. M. A. Maasch, Zehra Abedi +14 more

Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature

Journal of Biomedical Informatics(2022)10.1016/j.jbi.2022.104120

Top 25%

0.805DataRank

Top 25%22 citations

Jake Vasilakes, Anu Bompelli, Yuqi Zhou, Marcelo Fiszman, Hua Xu +5 more

Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocaa128

Top 31%

0.633DataRank

Top 31%11 citations

Anusha Bompelli, Jeffrey R. Bishop, Terrence J Adam, Olivier Bodenreider, Rui Zhang +1 more

Complementary and Integrative Health Information in the literature: its lexicon and named entity recognition

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad216

Top 32%

0.609DataRank

Top 32%20 citations

Robin Austin, Sheng-Chieh Lu, Greg Silverman, Yuqi Zhou, Halil Kilicoglu +3 more

Uncertainty-aware large language models for explainable disease diagnosis

npj Digital Medicine(2025)10.1038/s41746-025-02071-6

N/A

0.498DataRank · unranked

16 citations

Jiashuo Wang, Zidu Xu, Song Wang, David Brauer, Lindsay Welton +9 more

Multi-modality risk prediction of cardiovascular diseases for breast cancer cohort in the All of Us Research Program

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae199

Top 43%

0.430DataRank

Top 43%10 citations

Sicheng Zhou, Zexi Rao, Chen Zhao, Erjia Cui, Chetan Shenoy +6 more

Lifetime Ambient UV Radiation Exposure and Risk of Basal Cell Carcinoma by Anatomic Site in a Nationwide U.S. Cohort, 1983–2005

Cancer Epidemiology Biomarkers & Prevention(2021)10.1158/1055-9965.epi-20-1815

N/A

0.345DataRank · unranked

9 citations

Terrence Lee, Michael G. Kimlin, Cari M. Kitahara, Rui Zhang, Bruce H. Alexander +3 more

Enhancing the coverage of SemRep using a relation classification approach

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104658

N/A

0.330DataRank · unranked

8 citations

Rui Zhang, Halil Kilicoglu, Shufan Ming

Development and application of pharmacological statin-associated muscle symptoms phenotyping algorithms using structured and unstructured electronic health records data

JAMIA Open(2023)10.1093/jamiaopen/ooad087

N/A

0.241DataRank · unranked

4 citations

Pui Ying Yew, Chih‐Lin Chi, Meijia Song, Matt Loth, Rui Zhang +2 more

A Cross-institutional Evaluation on Breast Cancer Phenotyping NLP Algorithms on Electronic Health Records

arXiv (Cornell University)(2023)10.48550/arxiv.2303.08448

Top 65%

0.198DataRank

Top 65%2 citations

Nan Wang, Liwei Wang, Ju Sun, Anne Blaes, Hongfang Liu +2 more

W-procer: Weighted Prototypical Contrastive Learning for Medical Few-Shot Named Entity Recognition

arXiv (Cornell University)(2023)10.48550/arxiv.2305.18624

N/A

0.104DataRank · unranked

1 citations

Yang Ye, Jeremy Yeung, Huixue Zhou, Huaiyuan Chu, Rui Zhang +1 more

Toward a stable and low-resource PLM-based medical diagnostic system via prompt tuning and MoE structure

Scientific Reports(2023)10.1038/s41598-023-39543-2

N/A

0DataRank · unranked

5 citations

Zhuo Wang, Zhenyu Li, Zhichao Duan, Jiacheng Xu, Tengyu Pan +9 more

How far is Language Model from 100% Few-shot Named Entity Recognition in Medical Domain

arXiv (Cornell University)(2023)10.48550/arxiv.2307.00186

N/A

0DataRank · unranked

6 citations

Rui Zhang, Mingchen Li

Protocol to implement a computational pipeline for biomedical discovery based on a biomedical knowledge graph

STAR Protocols(2023)10.1016/j.xpro.2023.102666

N/A

0DataRank · unranked

1 citations

Yu Hou, Michael Levin, Rui Zhang, Fei Wang, Chang Su

Extracting Complementary and Integrative Health Approaches in Electronic Health Records

Journal of Healthcare Informatics Research(2023)10.1007/s41666-023-00137-2

N/A

0DataRank · unranked

2 citations

Greg Silverman, Zhongran Niu, Jenzi Silverman, Roni Evans, Robin Austin +2 more

From Answers to Insights: Unveiling the Strengths and Limitations of ChatGPT and Biomedical Knowledge Graphs

Research Square(2023)10.21203/rs.3.rs-3185632/v1

N/A

0DataRank · unranked

14 citations

Jeremy Yeung, Hua Xu, Chang Su, Fei Wang, Rui Zhang +1 more

From Answers to Insights: Unveiling the Strengths and Limitations of ChatGPT and Biomedical Knowledge Graphs

medRxiv(2023)10.1101/2023.06.09.23291208

N/A

0DataRank · unranked

9 citations

Jeremy Yeung, Hua Xu, Chang Su, Fei Wang, Rui Zhang +1 more

Repurposing Non-pharmacological Interventions for Alzheimer’s Diseases through Link Prediction on Biomedical Literature

medRxiv(2023)10.1101/2023.05.15.23290002

N/A

0DataRank · unranked

1 citations

Yu Hou, Huixue Zhou, Gayo Diallo, Marcelo Fiszman, Julian Wolfson +7 more

Development and validation of the pharmacological statin-associated muscle symptoms risk stratification (PSAMS-RS) score using real-world electronic health record data

medRxiv(2023)10.1101/2023.08.10.23293939

N/A

0DataRank · unranked

0 citations

Pui Ying Yew, Chih‐Lin Chi, Meijia Song, Matt Loth, Yue Liang +3 more

RT: a Retrieving and Chain-of-Thought framework for few-shot medical named entity recognition

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae095

N/A

0DataRank · unranked

50 citations

Huixue Zhou, Han Yang, Rui Zhang, Mingchen Li

LEAP: LLM instruction-example adaptive prompting framework for biomedical relation extraction

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae147

N/A

0DataRank · unranked

25 citations

Mingchen Li, Yongkang Xiao, Han Yang, Rui Zhang, Huixue Zhou

KNowNEt:Guided Health Information Seeking from LLMs via Knowledge Graph Integration

IEEE Transactions on Visualization and Computer Graphics(2024)10.1109/tvcg.2024.3456364

N/A

0DataRank · unranked

25 citations

Yu Hou, Yongkang Xiao, Rui Zhang, Qianwen Wang, Youfu Yan

FuseLinker: Leveraging LLM’s pre-trained text embeddings and domain knowledge to enhance GNN-based link prediction on biomedical knowledge graphs

Journal of Biomedical Informatics(2024)10.1016/j.jbi.2024.104730

N/A

0DataRank · unranked

19 citations

Sinian Zhang, Huixue Zhou, Mingchen Li, Han Yang, Rui Zhang +1 more

A review of reinforcement learning for natural language processing and applications in healthcare

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae215

N/A

0DataRank · unranked

18 citations

Haozhu Wang, Huixue Zhou, Mingchen Li, Yu Hou, Sicheng Zhou +4 more

Repurposing non-pharmacological interventions for Alzheimer's disease through link prediction on biomedical literature

Scientific Reports(2024)10.1038/s41598-024-58604-8

N/A

0DataRank · unranked

19 citations

Yu Hou, Huixue Zhou, Gayo Diallo, Marcelo Fiszman, Julian Wolfson +8 more

Risk prediction of heart diseases in patients with breast cancer: A deep learning approach with longitudinal electronic health records data

iScience(2024)10.1016/j.isci.2024.110329

N/A

0DataRank · unranked

14 citations

Anne Blaes, Chetan Shenoy, Ju Sun, Rui Zhang, Sicheng Zhou

Comparison of six natural language processing approaches to assessing firearm access in Veterans Health Administration electronic health records

Journal of the American Medical Informatics Association(2024)10.1093/jamia/ocae169

N/A

0DataRank · unranked

3 citations

R. Adams Dudley, Nathan Mesfin, Nicholas E. Ingraham, Isai Ortiz, Ann Bangerter +10 more

Advanced Care Planning Content Encoding with Natural Language Processing

Studies in health technology and informatics(2024)10.3233/shti231037

N/A

0DataRank · unranked

2 citations

Melissa A. Gunderson, Geetanjali Rajamani, Elizabeth C. Wick, Alexis Colley, Elizabeth Lindemann +7 more

Develop and validate a computable phenotype for the identification of Alzheimer's disease patients using electronic health record data

Alzheimer s & Dementia Diagnosis Assessment & Disease Monitoring(2024)10.1002/dad2.12613

N/A

0DataRank · unranked

2 citations

Ruoqi Wei, Yu Huang, Zhaoyi Chen, Tianchen Lyu, Sarah Bost +16 more

BiomedRAG: A Retrieval Augmented Large Language Model for Biomedicine

arXiv (Cornell University)(2024)10.48550/arxiv.2405.00465

N/A

0DataRank · unranked

0 citations

Halil Kilicoglu, Hua Xu, Rui Zhang, Mingchen Li

BiomedRAG: A retrieval augmented large language model for biomedicine

Journal of Biomedical Informatics(2025)10.1016/j.jbi.2024.104769

N/A

0DataRank · unranked

48 citations

Halil Kilicoglu, Hua Xu, Rui Zhang, Mingchen Li

RAMIE: retrieval-augmented multi-task information extraction with large language models on dietary supplements

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocaf002

N/A

0DataRank · unranked

17 citations

Shuang Zhou, Mingchen Li, Rui Zhang, Zaifu Zhan

Improving Dietary Supplement Information Retrieval: Development of a Retrieval-Augmented Generation System With Large Language Models

Journal of Medical Internet Research(2025)10.2196/67677

N/A

0DataRank · unranked

15 citations

Jeffrey R. Bishop, Hongfang Liu, Rui Zhang, Yu Hou

Automating expert-level medical reasoning evaluation of large language models

npj Digital Medicine(2025)10.1038/s41746-025-02208-7

N/A

0DataRank · unranked

9 citations

Wenya Xie, Jiaxi Li, Zaifu Zhan, Meijia Song, Han Yang +14 more

Synoptic reporting by summarizing cancer pathology reports using large language models

npj Health Systems(2025)10.1038/s44401-025-00013-8

N/A

0DataRank · unranked

7 citations

Shaika Chowdhury, Xiaodi Li, Vincent Buchner, Zhe He, Rui Zhang +5 more

MMRAG: multi-mode retrieval-augmented generation with large language models for biomedical in-context learning

Journal of the American Medical Informatics Association(2025)10.1093/jamia/ocaf128

N/A

0DataRank · unranked

7 citations

Jun Wang, Shuang Zhou, Jiawen Deng, Rui Zhang, Zaifu Zhan

Towards Better Multi-task Learning: A Framework for Optimizing Dataset Combinations in Large Language Models

(2025)10.18653/v1/2025.findings-naacl.297

N/A

0DataRank · unranked

3 citations

Rui Zhang, Zaifu Zhan

Multimodal Artificial Intelligence Agents in Healthcare: A Scoping Review

(2025)10.22541/au.176055853.39564234/v1

N/A

0DataRank · unranked

0 citations

Shuang Zhou, Yu Hou, Yiran Song, Min Zeng, Fang Tian +10 more

Exploring Eating Disorder Topics on Twitter: Machine Learning Approach

JMIR Medical Informatics(2020)10.2196/18273

N/A

0DataRank · unranked

47 citations

Yunpeng Zhao, Jiang Bian, Ann F. Haynos, Rui Zhang, Sicheng Zhou

An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C)

UNC Libraries(2025)10.17615/wb8c-t328

N/A

0DataRank · unranked

0 citations

Timothy Q. Duong, Hua Xu, Daniel R. Harris, Melissa A Haendel, Rafael Fuentes +23 more

Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019)

BMC Medical Informatics and Decision Making(2020)10.1186/s12911-020-01292-x

N/A

0DataRank · unranked

1 citations

Cui Tao, Jiang Bian, Rui Zhang, Zhe He

Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model

medRxiv(2020)10.1101/2020.09.16.20196022

N/A

0DataRank · unranked

1 citations

Jianfu Li, Yiqi Xu, Nan Wang, Yanshan Wang, Terrence J Adam +3 more

Drug repurposing for COVID-19 via knowledge graph completion

Journal of Biomedical Informatics(2021)10.1016/j.jbi.2021.103696

N/A

0DataRank · unranked

210 citations

Dimitar Hristovski, Dalton Schutte, Andrej Kastrin, Marcelo Fiszman, Halil Kilicoglu +1 more

Deep learning models in detection of dietary supplement adverse event signals from Twitter

JAMIA Open(2021)10.1093/jamiaopen/ooab081

N/A

0DataRank · unranked

15 citations

Yunpeng Zhao, Dalton Schutte, Jiang Bian, Rui Zhang, Yefeng Wang

Mining on Alzheimer’s diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing

BMC Bioinformatics(2022)10.1186/s12859-022-04934-1

N/A

0DataRank · unranked

33 citations

Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li +5 more

Classifying the lifestyle status for Alzheimer’s disease from clinical notes using deep learning with weak supervision

BMC Medical Informatics and Decision Making(2022)10.1186/s12911-022-01819-4

N/A

0DataRank · unranked

36 citations

Dalton Schutte, Yoonkwon Yi, Anusha Bompelli, Fang Yu, Yanshan Wang +2 more

Assessing the use of prescription drugs and dietary supplements in obese respondents in the National Health and Nutrition Examination Survey

PLoS ONE(2022)10.1371/journal.pone.0269241

N/A

0DataRank · unranked

6 citations

Aiwen Xing, Julia L. Sheffler, Elizabeth Steidley, Terrence J Adam, Rui Zhang +2 more

MTAP - A Distributed Framework for NLP Pipelines

2022 IEEE 10th International Conference on Healthcare Informatics (ICHI)(2022)10.1109/ichi54592.2022.00102

N/A

0DataRank · unranked

0 citations

Reed McEwan, Raymond Finzel, Greg Silverman, Rui Zhang, Serguei Pakhomov +2 more

An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C)

Journal of the American Medical Informatics Association(2023)10.1093/jamia/ocad134

N/A

0DataRank · unranked

26 citations

Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert Miller +23 more

A cross-institutional evaluation on breast cancer phenotyping NLP algorithms on electronic health records

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.08.018

N/A

0DataRank · unranked

18 citations

Nan Wang, Liwei Wang, Ju Sun, Anne Blaes, Hongfang Liu +2 more

Representing and utilizing clinical textual data for real world studies: An OHDSI approach

Journal of Biomedical Informatics(2023)10.1016/j.jbi.2023.104343

N/A

0DataRank · unranked

15 citations

Juan M. Banda, Michael Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu +22 more

Rui Zhang

Indexed papers

Top data-sharing exemplar

Papers