Jeffrey I. Gordon

Also affiliated with APC Microbiome Institute

Biochemistry, Genetics and Molecular BiologyMaterials ScienceAgricultural and Biological SciencesMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.6Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Nature Biotechnology(2011)10.1038/nbt.1823

Top 3%

6.9DataRank

Top 3%815 citations

Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral-Zettler +112 more

Papers

Driven by 42 papers — median percentile 83. Top paper: “Functional Genomic and Metabolic Studies of the Adaptations of a Prominent Adult Human Gut Symbiont, Bacteroides thetaiotaomicron, to the Suckling Period”.

Functional Genomic and Metabolic Studies of the Adaptations of a Prominent Adult Human Gut Symbiont, Bacteroides thetaiotaomicron, to the Suckling Period

Journal of Biological Chemistry(2006)10.1074/jbc.m606509200

N/A

10.3DataRank · unranked

338 citations

Eric C. Martens, Jeffrey I. Gordon, Magnus K. Bjursell

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Nature Biotechnology(2011)10.1038/nbt.1823

Top 3%

6.9DataRank

Top 3%815 citations

Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral-Zettler +112 more

Targeting of proteins into the eukaryotic secretory pathway: Signal peptide structure/function relationships

BioEssays(1990)10.1002/bies.950121005

N/A

4.5DataRank · unranked

70 citations

Jeffrey I. Gordon, Steven F. Nothwehr

An obesity-associated gut microbiome with increased capacity for energy harvest

Nature(2006)10.1038/nature05414

N/A

1.4DataRank · unranked

12327 citations

Ruth E. Ley, Michael A. Mahowald, Vincent Magrini, Elaine R. Mardis, Jeffrey I. Gordon +1 more

Human gut microbes associated with obesity

Nature(2006)10.1038/4441022a

N/A

1.4DataRank · unranked

8708 citations

Peter J. Turnbaugh, Samuel Klein, Jeffrey I. Gordon, Ruth E. Ley

Products of gut microbial Toll/interleukin-1 receptor domain NADase activities in gnotobiotic mice and Bangladeshi children with malnutrition

Cell Reports(2022)10.1016/j.celrep.2022.110738

N/A

0.702DataRank · unranked

14 citations

Mark A. Zaydman, Siddarth Venkatesh, Yo Sasaki, Neha Damaraju, Alex L. Yenkin +9 more

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Nature Precedings(2010)10.1038/npre.2010.5252.2

Top 30%

0.654DataRank

Top 30%9 citations

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James Cole +100 more

Bioactive glycans in a microbiome-directed food for children with malnutrition

Nature(2023)10.1038/s41586-023-06838-3

N/A

0.628DataRank · unranked

65 citations

Daniel M. Webber, Dmitry A. Rodionov, Suzanne Henrissat, Robert Y. Chen, Cyrus Zhou +24 more

TREM2 deficiency reprograms intestinal macrophages and microbiota to enhance anti–PD-1 tumor immunotherapy

Science Immunology(2024)10.1126/sciimmunol.adi5374

N/A

0.587DataRank · unranked

49 citations

Martina Molgora, Darya Khantakova, Natália Jaeger, Hao-Wei Chang, Rafael S. Czepielewski +15 more

An approach for evaluating the effects of dietary fiber polysaccharides on the human gut microbiome and plasma proteome

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2123411119

N/A

0.533DataRank · unranked

34 citations

Chandani Desai, Juan J. Castillo, Garret Couture, Ruteja A. Barve, Vincent Lombard +12 more

Glycoside hydrolase–mediated glucomannan catabolism in Segatella copri , a target of microbiota-directed foods for malnourished children

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2521522122

N/A

0.312DataRank · unranked

7 citations

Matthew C. Hibberd, Evan M. Lee, Bo Pilgaard, M. Paul Vuillemin, Emma Kiehn +15 more

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

Nature Precedings(2010)10.1038/npre.2010.5252

N/A

0.276DataRank · unranked

2 citations

Pelin Yilmaz, Renzo Kottmann, Dawn Field, Rob Knight, James Cole +100 more

Dietary plant diversity predicts early life microbiome maturation

medRxiv(2025)10.1101/2025.02.28.25323117

N/A

0.208DataRank · unranked

3 citations

Ammara Aqeel, Ben Neubert, Anna Bauer, Sharon Jiang, Olivia Osborne +29 more

Risk factors for neurosurgical intervention within 48 hours of admission for patients with mild traumatic brain injury and isolated subdural hematoma

Journal of neurosurgery(2024)10.3171/2024.5.jns232476

N/A

0.165DataRank · unranked

2 citations

Ripul R. Panchal, Lane Mellor, Laxmi Dhakal, David Hamilton, Glenda Quan +10 more

Bioactive glycans in a microbiome-directed food for malnourished children

medRxiv(2023)10.1101/2023.08.14.23293998

N/A

0DataRank · unranked

2 citations

Daniel M. Webber, Dmitry A. Rodionov, Suzanne Henrissat, Robert Y. Chen, Cyrus Zhou +24 more

Prevotella copri and microbiota members mediate the beneficial effects of a therapeutic food for malnutrition

Nature Microbiology(2024)10.1038/s41564-024-01628-7

N/A

0DataRank · unranked

52 citations

Evan M. Lee, William Yi Wang, Cyrus Zhou, Kali M. Pruss, Suzanne Henrissat +27 more

A human gut Faecalibacterium prausnitzii fatty acid amide hydrolase

Science(2024)10.1126/science.ado6828

N/A

0DataRank · unranked

37 citations

Siddarth Venkatesh, Ke Ke, Michael J. Barratt, Jeffrey I. Gordon, Jiye Cheng

A microbiome-directed therapeutic food for children recovering from severe acute malnutrition

Science Translational Medicine(2024)10.1126/scitranslmed.adn2366

N/A

0DataRank · unranked

17 citations

Matthew C. Hibberd, Ishita Mostafa, Nurun Nahar Naila, Md Munirul Islam, Mahabub Uz Zaman +17 more

Deficiency of IL-22–binding protein enhances the ability of the gut microbiota to protect against enteric pathogens

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2321836121

N/A

0DataRank · unranked

16 citations

Blanda Di Luccia, Susan Gilfillan, Hao-Wei Chang, Christina Song, Jiye Cheng +5 more

A shared group of bacterial taxa in the duodenal microbiota of undernourished Pakistani children with environmental enteric dysfunction

mSphere(2024)10.1128/msphere.00196-24

N/A

0DataRank · unranked

14 citations

Robert Y. Chen, Nicholas W. Griffin, Matthew C. Hibberd, Aqsa Khalid, Kamran Sadiq +17 more

Fetal MAVS and type I IFN signaling pathways control ZIKV infection in the placenta and maternal decidua

The Journal of Experimental Medicine(2024)10.1084/jem.20240694

N/A

0DataRank · unranked

10 citations

Leran Wang, Reyan Coskun, Stéfanie Primon Muraro, Fang Zhao, Michelle Elam-Noll +7 more

In vivo manipulation of human gut Bacteroides fitness by abiotic oligosaccharides

Nature Chemical Biology(2024)10.1038/s41589-024-01763-6

N/A

0DataRank · unranked

1 citations

Zachary Beller, Megan Hill, Han Yuan, David Belanger, Cheryl Frankfater +8 more

Establishing human microbial observatory programs in low‐ and middle‐income countries

Annals of the New York Academy of Sciences(2024)10.1111/nyas.15224

N/A

0DataRank · unranked

1 citations

Michael J. Barratt, Matthew C. Hibberd, Mustafizur Rahman, Tahmeed Ahmed, Jeffrey I. Gordon

Effects of intergenerational transmission of small intestinal bacteria cultured from stunted Bangladeshi children with enteropathy

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.01.621574

N/A

0DataRank · unranked

6 citations

C.-Y. Kao, Alexandra Byrne, Robert Y. Chen, Blanda Di Luccia, Laura Karvelyte +16 more

Integrative genomic reconstruction reveals heterogeneity in carbohydrate utilization across human gut bifidobacteria

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.06.602360

N/A

0DataRank · unranked

3 citations

Dmitry A. Rodionov, Matthew Charles Hibberd, Janaki L. Guruge, James D Kent, Marat D. Kazanov +9 more

Effects of the gut microbiota on placental angiogenesis and intrauterine growth in gnotobiotic mice

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2426341122

N/A

0DataRank · unranked

15 citations

Z.L. Chang, Athziri Marcial Rodríguez, Haoxin Liu, Jiye Cheng, Yael Alippe +3 more

Sequential co-assembly reduces computational resources and errors in metagenome-assembled genomes

Cell Reports Methods(2025)10.1016/j.crmeth.2025.101005

N/A

0DataRank · unranked

3 citations

Jeffrey I. Gordon, Hannah M. Lynn

Using gnotobiotic mice to decipher effects of gut microbiome repair in undernourished children on tuft and goblet cell function

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2523178122

N/A

0DataRank · unranked

2 citations

Hao-Wei Chang, Jiye Cheng, Daniel M. Webber, Hannah M. Lynn, Matthew C. Hibberd +6 more

Enhancing inference of differential gene expression in metatranscriptomes from human microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.11.675436

N/A

0DataRank · unranked

0 citations

Nathan P. McNulty, Matthew C. Hibberd, Jiye Cheng, Kazi Ahsan, Hao-Wei Chang +3 more

Combined Prebiotic and Microbial Intervention Improves Oral Cholera Vaccination Responses in a Mouse Model of Childhood Undernutrition

Cell Host & Microbe(2020)10.1016/j.chom.2020.04.008

N/A

0DataRank · unranked

65 citations

Philip P. Ahern, Nicholas W. Griffin, Jiye Cheng, Janaki L. Guruge, Alexandra Byrne +9 more

Identifying determinants of bacterial fitness in a model of human gut microbial succession

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1918951117

N/A

0DataRank · unranked

54 citations

Arjun S. Raman, Matthew C. Hibberd, Jiye Cheng, Nicholas W. Griffin, Yangqing Peng +5 more

Microbiota functional activity biosensors for characterizing nutrient utilization in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.02.362798

N/A

0DataRank · unranked

0 citations

Zachary Beller, Samantha L. Peters, Amir Rajabi, Gianluca Dimartino, Richard J. Giannone +3 more

Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans

Nature(2021)10.1038/s41586-021-03671-4

N/A

0DataRank · unranked

141 citations

Chandni Desai, Arjun S. Raman, Robert Y. Chen, Matthew C. Hibberd, Jiye Cheng +20 more

Strain-level functional variation in the human gut microbiota based on bacterial binding to artificial food particles

Cell Host & Microbe(2021)10.1016/j.chom.2021.01.007

N/A

0DataRank · unranked

53 citations

Janaki L. Guruge, Juan J. Castillo, Garret Couture, Vincent Lombard, Nicolas Terrapon +4 more

Melding microbiome and nutritional science with early child development

Nature Medicine(2021)10.1038/s41591-021-01451-1

N/A

0DataRank · unranked

9 citations

Ishita Mostafa, Matthew C. Hibberd, Subhasish Das, Hannah M. Lynn, Daniel M. Webber +5 more

Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo

eLife(2021)10.7554/elife.64478

N/A

0DataRank · unranked

10 citations

Zachary Beller, Samantha L. Peters, Amir Rajabi, Gianluca Dimartino, Richard J. Giannone +3 more

Gut microbiome development and childhood undernutrition

Cell Host & Microbe(2022)10.1016/j.chom.2022.04.002

N/A

0DataRank · unranked

68 citations

Tahmeed Ahmed, Jeffrey I. Gordon, Michael J. Barratt

Human Milk Oligosaccharide Compositions Illustrate Global Variations in Early Nutrition

Journal of Nutrition(2022)10.1093/jn/nxac027

N/A

0DataRank · unranked

51 citations

Jasmine C. C. Davis, Sarah M. Totten, Lauren Wu, Laura D. Klein, Mélanie Martin +18 more

ApoE isoform– and microbiota-dependent progression of neurodegeneration in a mouse model of tauopathy

Science(2023)10.1126/science.add1236

N/A

0DataRank · unranked

247 citations

David O’Donnell, Nimansha Jain, Jason D. Ulrich, Jasmin Herz, Yuhao Li +18 more

Transplantation of gut microbiota from old mice into young healthy mice reduces lean mass but not bone mass

Gut Microbes(2023)10.1080/19490976.2023.2236755

N/A

0DataRank · unranked

20 citations

Carrie A. Cowardin, Louise Grahnemo, Julia M. Scheffler, Karin Horkeby, Cecilia Engdahl +12 more

Inducible CRISPR-targeted “knockdown” of human gut Bacteroides in gnotobiotic mice discloses glycan utilization strategies

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2311422120

N/A

0DataRank · unranked

20 citations

Darryl A. Wesener, Timothy Seebeck, Janaki L. Guruge, Alexandra Byrne, Suzanne Henrissat +15 more

Prevotella copri -related effects of a therapeutic food for malnutrition

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.11.553030

N/A

0DataRank · unranked

4 citations

Evan M. Lee, William Yi Wang, Cyrus Zhou, Kali M. Pruss, Suzanne Henrissat +27 more

Jeffrey I. Gordon

Indexed papers

Top data-sharing exemplar

Papers