Hugh K. Haddox

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin”.

Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin

Cell Host & Microbe(2024)10.1016/j.chom.2024.06.015

N/A

0.557DataRank · unranked

40 citations

Rachel Eguia, Juhye Lee, Hugh K. Haddox, Jared Galloway, Nguyen Van Vinh Chau +14 more

Deep mutational scanning of CYP2C19 in human cells reveals a substrate specificity-abundance tradeoff

Genetics(2024)10.1093/genetics/iyae156

N/A

0.433DataRank · unranked

12 citations

Katherine A. Sitko, Jared Galloway, Hugh K. Haddox, Aisha Haley Bianchi, Ajeya Dixon +13 more

Accurate Computational Design of 3D Protein Crystals

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.18.517014

N/A

0.330DataRank · unranked

8 citations

Shunzhi Wang, Una Nattermann, Asim K. Bera, Andrew J. Borst, Matthew J. Bick +21 more

A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer–Encoder

Molecular Biology and Evolution(2025)10.1093/molbev/msaf186

N/A

0.312DataRank · unranked

7 citations

Kevin Sung, Mackenzie M. Johnson, Will Dumm, David Rich, Tyler N. Starr +5 more

The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.07.631013

N/A

0.241DataRank · unranked

4 citations

Georg Angehrn, Luca Sesta, Chris Jennings-Shaffer, Seth D Temple, Jared Galloway +5 more

Thrifty wide-context models of B cell receptor somatic hypermutation

eLife(2025)10.7554/elife.105471

N/A

0.232DataRank · unranked

3 citations

Mackenzie M. Johnson, Will Dumm, Noah Simon, Hugh K. Haddox, Julia Fukuyama +2 more

Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571235

N/A

0DataRank · unranked

13 citations

Rachel Eguia, Juhye Lee, Hugh K. Haddox, Jared Galloway, Nguyễn Văn Vĩnh Châu +14 more

Deep mutational scanning reveals functional constraints and antibody-escape potential of Lassa virus glycoprotein complex

Immunity(2024)10.1016/j.immuni.2024.06.013

N/A

0DataRank · unranked

26 citations

Katharine H. D. Crawford, Michael Murphy, Jared Galloway, Hugh K. Haddox, Frederick A. Matsen +4 more

Deep mutational scanning reveals functional constraints and antigenic variability of Lassa virus glycoprotein complex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.05.579020

N/A

0DataRank · unranked

2 citations

Katharine H. D. Crawford, Michael Murphy, Jared Galloway, Hugh K. Haddox, Frederick A. Matsen +4 more

Thrifty wide-context models of B cell receptor somatic hypermutation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.26.625407

N/A

0DataRank · unranked

2 citations

Mackenzie M. Johnson, Will Dumm, Noah Simon, Hugh K. Haddox, Julia Fukuyama +2 more

Computational design of sequence-specific DNA-binding proteins

Nature Structural & Molecular Biology(2025)10.1038/s41594-025-01669-4

N/A

0DataRank · unranked

23 citations

Robert Pecoraro, Ryan McHugh, Lindsey Doyle, Wei Chen, Olivier Boivin +15 more

The mutation rate of SARS-CoV-2 is highly variable between sites and is influenced by sequence context, genomic region, and RNA structure

Nucleic Acids Research(2025)10.1093/nar/gkaf503

N/A

0DataRank · unranked

13 citations

Georg Angehrn, Luca Sesta, Chris Jennings-Shaffer, Seth D Temple, Jared Galloway +6 more

Nucleotide context models outperform protein language models for predicting antibody affinity maturation

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013758

N/A

0DataRank · unranked

1 citations

Kevin Sung, Hugh K. Haddox, A. B. Vora, Tatsuya Araki, Gabriel D. Victora +4 more

Thrifty wide-context models of B cell receptor somatic hypermutation

eLife(2025)10.7554/elife.105471.1

N/A

0DataRank · unranked

5 citations

Mackenzie M. Johnson, Will Dumm, Noah Simon, Hugh K. Haddox, Julia Fukuyama +2 more

Clonal interference and changing selective pressures shape the escape of SARS-CoV-2 from hundreds of antibodies

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.22.634135

N/A

0DataRank · unranked

0 citations

Omar Abdel Aziz, Jared Galloway, Javen Kent, C. M. Cooper, Jesse D. Bloom +2 more

Thrifty wide-context models of B cell receptor somatic hypermutation

eLife(2025)10.7554/elife.105471.2

N/A

0DataRank · unranked

0 citations

Mackenzie M. Johnson, Will Dumm, Noah Simon, Hugh K. Haddox, Julia Fukuyama +2 more

Large-scale design and refinement of stable proteins using sequence-only models

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.12.435185

N/A

0DataRank · unranked

10 citations

Scott Novotney, Devin Strickland, Hugh K. Haddox, Nicholas Leiby, Gabriel J. Rocklin +18 more

Thrifty wide-context models of B cell receptor somatic hypermutation

eLife(2025)10.7554/elife.105471.3

N/A

0DataRank · unranked

0 citations

Mackenzie M. Johnson, Will Dumm, Noah Simon, Hugh K. Haddox, Julia Fukuyama +2 more

De novo design of obligate ABC-type heterotrimeric proteins

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00879-4

N/A

0DataRank · unranked

30 citations

Andrew Favor, Ya‐Ting Chang, Andrew Norris, Scott E. Boyken, Yang Hsia +8 more

Accurate computational design of three-dimensional protein crystals

Nature Materials(2023)10.1038/s41563-023-01683-1

N/A

0DataRank · unranked

56 citations

Shunzhi Wang, Una Nattermann, Asim K. Bera, Andrew J. Borst, Muammer Y. Yaman +26 more

Small-molecule binding and sensing with a designed protein family

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.565201

N/A

0DataRank · unranked

34 citations

Samuel J. Pellock, Christoffer Norn, Doug Tischer, Justas Dauparas, Ivan Anischenko +14 more

Computational design of sequence-specific DNA-binding proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.20.558720

N/A

0DataRank · unranked

28 citations

Robert Pecoraro, Ryan McHugh, Lindsey Doyle, Wei Chen, Olivier Boivin +15 more

Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.31.551037

N/A

0DataRank · unranked

25 citations

Jared Galloway, Bernadeta Dadonaite, Jesse D. Bloom, Frederick A. Matsen, William S. DeWitt +1 more