Aaron R. Dinner

Also affiliated with University of Chicago, Computational Physics (United States)

Biochemistry, Genetics and Molecular BiologyPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “Spatiotemporal control of liquid crystal structure and dynamics through activity patterning”.

Spatiotemporal control of liquid crystal structure and dynamics through activity patterning

Nature Materials(2021)10.1038/s41563-020-00901-4

N/A

3.7DataRank · unranked

137 citations

Steven A. Redford, Paul V. Ruijgrok, Nitin Kumar, Ali Mozaffari, Sasha Zemsky +6 more

Transient intracellular acidification regulates the core transcriptional heat shock response

eLife(2020)10.7554/elife.54880

N/A

2.9DataRank · unranked

96 citations

Christopher D. Katanski, Aaron R. Dinner, D. Allan Drummond, Catherine G. Triandafillou

KidA, a multi-PAS domain protein, tunes the period of the cyanobacterial circadian oscillator

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2202426119

N/A

0.467DataRank · unranked

9 citations

Chris Chi, Gopal K. Pattanayak, Aaron R. Dinner, Michael J. Rust, Soo Ji Kim

Bayesian modeling reveals metabolite‐dependent ultrasensitivity in the cyanobacterial circadian clock

Molecular Systems Biology(2020)10.15252/msb.20199355

N/A

0.464DataRank · unranked

21 citations

Danylo Lavrentovich, Archana G. Chavan, Eugene Leypunskiy, Eileen Li, Charles H. Matthews +4 more

Motor crosslinking augments elasticity in active nematics

Soft Matter(2024)10.1039/d3sm01176c

N/A

0.406DataRank · unranked

14 citations

Jonathan Colen, Jordan L. Shivers, Sasha Zemsky, Mehdi Molaei, Carlos Floyd +6 more

A centrin–Sfi1 myoneme fishnet powers ultrafast calcium-triggered contraction in the giant ciliate Spirostomum ambiguum

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.07.622534

N/A

0.292DataRank · unranked

6 citations

Carlos Floyd, L. X. Xu, Peter M. Thompson, Connie Yan, Wallace F. Marshall +6 more

Insulin dissociates by diverse mechanisms of coupled unfolding and unbinding

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.16.993931

N/A

0.241DataRank · unranked

4 citations

Chi-Jui Feng, Bodhi P. Vani, Erik H. Thiede, Lu Hong, Jonathan Weare +3 more

Dietary Restriction Impacts Peripheral Circadian Clock Output Important for Longevity in Drosophila

(2023)10.7554/elife.86191

N/A

0.208DataRank · unranked

3 citations

Yong-Jae Kwon, Marta Iwanaszko, Peng Jiang, Ladan Abbasi, Nicholas J. Wright +6 more

Elucidating the Role of Filament Turnover in Cortical Flow using Simulations and Representation Learning

arXiv (Cornell University)(2023)10.48550/arxiv.2310.10819

N/A

0.104DataRank · unranked

1 citations

Elizabeth D. White, Edwin Munro, Suriyanarayanan Vaikuntanathan, Aaron R. Dinner, Yuqing Qiu

Error Bounds for Dynamical Spectral Estimation

SIAM Journal on Mathematics of Data Science(2021)10.1137/20m1335984

N/A

0DataRank · unranked

0 citations

Erik H. Thiede, Douglas Dow, Aaron R. Dinner, Jonathan Weare, Robert J. Webber

Thermodynamic Control of Activity Patterns in Cytoskeletal Networks

Physical Review Letters(2022)10.1103/physrevlett.129.128002

N/A

0DataRank · unranked

14 citations

Yuqing Qiu, Étienne Fodor, Aaron R. Dinner, Suriyanarayanan Vaikuntanathan, Alexandra Lamtyugina

Kinetic modeling reveals additional regulation at co-transcriptional level by post-transcriptional sRNA regulators

Cell Reports(2021)10.1016/j.celrep.2021.109764

N/A

0DataRank · unranked

25 citations

Shriram Chennakesavalu, Emily M. Heideman, Xiangqian Ma, Magda Bujnowska, Lu Hong +4 more

Volumetric microscopy of CD9 and CD63 reveals distinct subpopulations and novel structures of extracellular vesicles in situ in triple negative breast cancer cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.08.515679

N/A

0DataRank · unranked

1 citations

Nykia D. Walker, Hannah Yi, Aaron R. Dinner, Norbert F. Scherer, Marsha Rich Rosner +1 more

Dynamics of activation in the voltage-sensing domain of Ci-VSP

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.19.521128

N/A

0DataRank · unranked

1 citations

Rong Shen, Benoı̂t Roux, Aaron R. Dinner, Spencer C. Guo

Predicting rare events using neural networks and short-trajectory data

Journal of Computational Physics(2023)10.1016/j.jcp.2023.112152

N/A

0DataRank · unranked

21 citations

Justin Finkel, Aaron R. Dinner, Jonathan Weare, John Strahan

Inexact iterative numerical linear algebra for neural network-based spectral estimation and rare-event prediction

The Journal of Chemical Physics(2023)10.1063/5.0151309

N/A

0DataRank · unranked

13 citations

Spencer C. Guo, Chatipat Lorpaiboon, Aaron R. Dinner, Jonathan Weare, John Strahan

Pervasive, conserved secondary structure in highly charged protein regions

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011565

N/A

0DataRank · unranked

4 citations

Rosalind Wenshan Pan, Aaron R. Dinner, D. Allan Drummond, Catherine G. Triandafillou

Understanding the sources of error in MBAR through asymptotic analysis

The Journal of Chemical Physics(2023)10.1063/5.0147243

N/A

0DataRank · unranked

2 citations

Brian Van Koten, Aaron R. Dinner, Erik H. Thiede, Xiang Sherry Li

Actin filament alignment causes mechanical hysteresis in cross-linked networks

Soft Matter(2021)10.1039/d1sm00412c

N/A

0DataRank · unranked

26 citations

Steven A. Redford, Chatipat Lorpaiboon, Sayantan Majumdar, Aaron R. Dinner, Margaret L. Gardel +1 more

Actin crosslinker competition and sorting drive emergent GUV size-dependent actin network architecture

Communications Biology(2021)10.1038/s42003-021-02653-6

N/A

0DataRank · unranked

54 citations

Steven A. Redford, Chatipat Lorpaiboon, Alessandro Groaz, Hossein Moghimianavval, Thomas Litschel +5 more

Pervasive, conserved secondary structure in highly charged protein regions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.15.528637

N/A

0DataRank · unranked

0 citations

Rosalind Wenshan Pan, Aaron R. Dinner, D. Allan Drummond, Catherine G. Triandafillou

Inexact iterative numerical linear algebra for neural network-based spectral estimation and rare-event prediction

arXiv (Cornell University)(2023)10.48550/arxiv.2303.12534

N/A

0DataRank · unranked

0 citations

Spencer C. Guo, Chatipat Lorpaiboon, Aaron R. Dinner, Jonathan Weare, John Strahan

Accurate estimates of dynamical statistics using memory

arXiv (Cornell University)(2023)10.48550/arxiv.2311.07881

N/A

0DataRank · unranked

0 citations

Spencer C. Guo, John Strahan, Jonathan Weare, Aaron R. Dinner, Chatipat Lorpaiboon

Dynamics of activation in the voltage-sensing domain of Ciona intestinalis phosphatase Ci-VSP

Nature Communications(2024)10.1038/s41467-024-45514-6

N/A

0DataRank · unranked

16 citations

Rong Shen, Benoı̂t Roux, Aaron R. Dinner, Spencer C. Guo

Kinetic model of small RNA-mediated regulation suggests that a small RNA can regulate co-transcriptionally

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.03.365106

N/A

0DataRank · unranked

0 citations

Shriram Chennakesavalu, Emily M. Heideman, Xiangqian Ma, Magda Bujnowska, Lu Hong +4 more

Temperature-dependent fold-switching mechanism of the circadian clock protein KaiB

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2412327121

N/A

0DataRank · unranked

10 citations

Damini Sood, Spencer C. Guo, Nanhao Chen, Adam Antoszewski, Tegan Marianchuk +11 more

Accurate estimates of dynamical statistics using memory

The Journal of Chemical Physics(2024)10.1063/5.0187145

N/A

0DataRank · unranked

8 citations

Spencer C. Guo, John Strahan, Jonathan Weare, Aaron R. Dinner, Chatipat Lorpaiboon

BAD-NEUS: Rapidly converging trajectory stratification

The Journal of Chemical Physics(2024)10.1063/5.0215975

N/A

0DataRank · unranked

5 citations

Chatipat Lorpaiboon, Jonathan Weare, Aaron R. Dinner, John Strahan

Stratification as a General Variance Reduction Method for Markov Chain Monte Carlo

SIAM/ASA Journal on Uncertainty Quantification(2020)10.1137/18m122964x

N/A

0DataRank · unranked

1 citations

Erik H. Thiede, Brian Van Koten, Jonathan Weare, Aaron R. Dinner

BAD-NEUS: Rapidly converging trajectory stratification

arXiv (Cornell University)(2024)10.48550/arxiv.2404.19653

N/A

0DataRank · unranked

1 citations

Chatipat Lorpaiboon, Jonathan Weare, Aaron R. Dinner, John Strahan

Chronic infections can generate SARS-CoV-2-like bursts of viral evolution without epistasis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.06.616878

N/A

0DataRank · unranked

1 citations

John Strahan, Aaron R. Dinner, John P. Barton, Edwin Rodríguez-Horta

Analysis of the Dynamics of a Complex, Multipathway Reaction: Insulin Dimer Dissociation

The Journal of Physical Chemistry B(2024)10.1021/acs.jpcb.4c06933

N/A

0DataRank · unranked

0 citations

Spencer C. Guo, Sammy Allaw, Aaron R. Dinner, Kyunghoon Jeong

Limits on the computational expressivity of non-equilibrium biophysical processes

Nature Communications(2025)10.1038/s41467-025-61873-0

N/A

0DataRank · unranked

15 citations

Aaron R. Dinner, Arvind Murugan, Suriyanarayanan Vaikuntanathan, Carlos Floyd

Using pretrained graph neural networks with token mixers as geometric featurizers for conformational dynamics

The Journal of Chemical Physics(2025)10.1063/5.0244453

N/A

0DataRank · unranked

10 citations

Chatipat Lorpaiboon, Spencer C. Guo, Jonathan Weare, Aaron R. Dinner, Zihan Pengmei

Mapping the diverse topologies of protein-protein interaction fitness landscapes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.14.682342

N/A

0DataRank · unranked

1 citations

Matthew J. Styles, Cheng Gao, Aditya Nandy, Christopher Basile, Joshua A. Pixley +5 more

Tau-Driven Coordination of Microtubule-Actin Crosstalk in Cell-Sized Vesicles

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.12.669979

N/A

0DataRank · unranked

0 citations

Jordan L. Shivers, Liya Ding, Aaron R. Dinner, Allen P. Liu, Mousumi Akter

Using Multiple Isotope-Labeled Infrared Spectra for the Structural Characterization of an Intrinsically Disordered Peptide

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c05522

N/A

0DataRank · unranked

0 citations

Aaron R. Dinner, Andrei Tokmakoff, Ian J. A. Bongalonta

Local imperfect feedback control in non-equilibrium biophysical systems enabled by thermodynamic constraints

arXiv (Cornell University)(2025)10.48550/arxiv.2507.07295

N/A

0DataRank · unranked

0 citations

Aaron R. Dinner, Suriyanarayanan Vaikuntanathan, Carlos Floyd