B. Franklin Pugh

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 27 papers. Top paper: “Complete Khoisan and Bantu genomes from southern Africa”.

Complete Khoisan and Bantu genomes from southern Africa

Nature(2010)10.1038/nature08795

N/A

0.932DataRank · unranked

500 citations

Webb Miller, Aakrosh Ratan, Lynn P. Tomsho, Belinda Giardine, Lindsay R. Kasson +44 more

A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome

Science(2011)10.1126/science.1200508

N/A

0.870DataRank · unranked

330 citations

Christian J. Wippo, Megha Wal, Elissa Ward, Philipp Korber, B. Franklin Pugh +1 more

Genomic Nucleosome Organization Reconstituted with Pure Proteins

Cell(2016)10.1016/j.cell.2016.09.045

N/A

0.859DataRank · unranked

306 citations

Megha Wal, Shinya Watanabe, Bongsoo Park, Craig L. Peterson, B. Franklin Pugh +2 more

Alignment and quantification of ChIP-exo crosslinking patterns reveal the spatial organization of protein–DNA complexes

Nucleic Acids Research(2020)10.1093/nar/gkaa618

N/A

0DataRank · unranked

7 citations

Matthew J. Rossi, Nina Farrell, B. Franklin Pugh, Shaun Mahony, Naomi Yamada

A ChIP-exo screen of 887 PCRP transcription factor antibodies in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.08.140046

N/A

0DataRank · unranked

3 citations

Luca Mariani, Gerson Rothschild, Edwin R. Smith, Bryan J. Venters, Thomas R. Blanda +20 more

PEGR: a management platform for ChIP-based next generation sequencing pipelines

Practice and Experience in Advanced Research Computing(2020)10.1145/3311790.3396621

N/A

0DataRank · unranked

3 citations

Gretta D. Kellogg, Shaun Mahony, William Lai, B. Franklin Pugh, Danying Shao

What do Transcription Factors Interact With?

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.166883

N/A

0DataRank · unranked

64 citations

B. Franklin Pugh, Hai‐Ning Chen

Acute stress drives global repression through two independent RNA polymerase II stalling events in Saccharomyces

Cell Reports(2021)10.1016/j.celrep.2020.108640

N/A

0DataRank · unranked

26 citations

Matthew J. Rossi, Alain R. Bataille, Chitvan Mittal, William Lai, B. Franklin Pugh +1 more

A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells

Genome Research(2021)10.1101/gr.275472.121

N/A

0DataRank · unranked

24 citations

Luca Mariani, Gerson Rothschild, Edwin R. Smith, Bryan J. Venters, Thomas R. Blanda +20 more

High similarity among ChEC-seq datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.04.429774

N/A

0DataRank · unranked

9 citations

Matthew J. Rossi, B. Franklin Pugh, Chitvan Mittal

STENCIL: A web templating engine for visualizing and sharing life science datasets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.04.447108

N/A

0DataRank · unranked

1 citations

Ali Nematbakhsh, Prashant Kumar Kuntala, Gretta D. Kellogg, B. Franklin Pugh, William Lai +1 more

PEGR: a flexible management platform for reproducible epigenomic and genomic research

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.26.453821

N/A

0DataRank · unranked

0 citations

Gretta D. Kellogg, Ali Nematbakhsh, Prashant Kumar Kuntala, Shaun Mahony, B. Franklin Pugh +2 more

PEGR: a flexible management platform for reproducible epigenomic and genomic research

Genome biology(2022)10.1186/s13059-022-02671-5

N/A

0DataRank · unranked

8 citations

Gretta D. Kellogg, Ali Nematbakhsh, Prashant Kumar Kuntala, Shaun Mahony, B. Franklin Pugh +2 more

STENCIL: A web templating engine for visualizing and sharing life science datasets

PLoS Computational Biology(2022)10.1371/journal.pcbi.1009859

N/A

0DataRank · unranked

4 citations

Ali Nematbakhsh, Prashant Kumar Kuntala, Gretta D. Kellogg, B. Franklin Pugh, William Lai +1 more

An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters

Genes & Development(2022)10.1101/gad.350026.122

N/A

0DataRank · unranked

14 citations

Olivia Lang, William Lai, B. Franklin Pugh, Chitvan Mittal

Genome-wide promoter assembly in E. coli measured at single-base resolution

Genome Research(2022)10.1101/gr.276544.121

N/A

0DataRank · unranked

5 citations

Javaid Jabbar, Nitika Badjatia, Matthew J. Rossi, William Lai, B. Franklin Pugh +1 more

ScriptManager: an interactive platform for reducing barriers to genomics analysis

Practice and Experience in Advanced Research Computing(2022)10.1145/3491418.3535161

N/A

0DataRank · unranked

3 citations

B. Franklin Pugh, William Lai, Olivia Lang

Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly

Molecular Cell(2023)10.1016/j.molcel.2023.10.037

N/A

0DataRank · unranked

7 citations

Ila van Kruijsbergen, Chitvan Mittal, Cor Lieftink, Ineke Brouwer, Teun van den Brand +12 more

GenoPipe: identifying the genotype of origin within (epi)genomic datasets

Nucleic Acids Research(2023)10.1093/nar/gkad950

N/A

0DataRank · unranked

3 citations

Divyanshi Srivastava, B. Franklin Pugh, William Lai, Olivia Lang

Joint sequence & chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.06.561228

N/A

0DataRank · unranked

8 citations

Jianyu Yang, Tomohiko Akiyama, D. James, Alexis Morrissey, Thomas R. Blanda +6 more

GenoPipe: identifying the genotype of origin within (epi)genomic datasets

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.14.532660

N/A

0DataRank · unranked

0 citations

Divyanshi Srivastava, B. Franklin Pugh, William Lai, Olivia Lang

A chromatin-associated regulator of RNA Polymerase III assembly at tRNA genes revealed by locus-specific proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.17.534528

N/A

0DataRank · unranked

0 citations

Ila van Kruijsbergen, Chitvan Mittal, Cor Lieftink, Ineke Brouwer, Teun van den Brand +11 more

Molecular basis of global promoter sensing and nucleosome capture by the SWR1 chromatin remodeler

Cell(2024)10.1016/j.cell.2024.09.007

N/A

0DataRank · unranked

23 citations

Giho Park, Ziyang Ye, Justin S. Cha, Anne M. Gardner, Qin Lei +6 more

High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.11.617876

N/A

0DataRank · unranked

3 citations

Lauren A. Mayse, Lu Bai, Marcus B. Smolka, B. Franklin Pugh, Michelle D. Wang +1 more

High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation

eLife(2025)10.7554/elife.105675

N/A

0DataRank · unranked

4 citations

Lauren A. Mayse, Lu Bai, Marcus B. Smolka, B. Franklin Pugh, Michelle D. Wang +1 more

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

Genome biology(2020)10.1186/s13059-020-02040-0

N/A

0DataRank · unranked

48 citations

Huiyan Jin, Irina O. Vvedenskaya, Jordi Abante Llenas, Tingting Zhao, Indranil Malik +13 more

Actin R256 Mono-methylation Is a Conserved Post-translational Modification Involved in Transcription

Cell Reports(2020)10.1016/j.celrep.2020.108172

N/A

0DataRank · unranked

15 citations

Yuan Zhong, Amelie Albrecht, Pau Biak Sang, Adrian Maples, Zhenan Liu +18 more