Stephen J. Salipante

Also affiliated with University of Washington Applied Physics Laboratory

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 38 papers. Top paper: “Genomic attributes of homology-directed DNA repair deficiency in metastatic prostate cancer”.

Genomic attributes of homology-directed DNA repair deficiency in metastatic prostate cancer

JCI Insight(2021)10.1172/jci.insight.152789

N/A

0.542DataRank · unranked

36 citations

Sayan Dasgupta, Payel Chatterjee, Ilsa M. Coleman, Gavin Ha, Lisa S. Ang +17 more

Mechanisms of Staphylococcus aureus survival of trimethoprim-sulfamethoxazole-induced thymineless death

mBio(2024)10.1128/mbio.01634-24

N/A

0.312DataRank · unranked

5 citations

Allyson Tran, T. B. Gardiner, Tiia Freeman, Angshita Dutta, Carson J. Miller +7 more

Repeated isolation of an antibiotic-dependent and temperature-sensitive mutant ofPseudomonas aeruginosafrom a cystic fibrosis patient

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa482

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0DataRank · unranked

6 citations

Alison Scott, Catherine R. Armbruster, Dale Whittington, J. Scott Edgar, Xuan Qin +8 more

Discovery and Characterization of Spike N‐Terminal Domain‐Binding Aptamers for Rapid SARS‐CoV‐2 Detection

Angewandte Chemie International Edition(2021)10.1002/anie.202107730

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0DataRank · unranked

109 citations

Lucy Yang, Ha V. Dang, Emmeline L. Cheng, Ian I. Cardle, Alexandra C. Walls +8 more

Combining Ivacaftor and Intensive Antibiotics Achieves Limited Clearance of Cystic Fibrosis Infections

mBio(2021)10.1128/mbio.03148-21

N/A

0DataRank · unranked

66 citations

Sudhakar Pipavath, Anna Li, Anh T. Vo, Anina Ratjen, Suzanne Carter +10 more

A population-level strain genotyping method to study pathogen strain dynamics in human infections

JCI Insight(2021)10.1172/jci.insight.152472

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0DataRank · unranked

6 citations

S. Durfey, Sumedha Ravishankar, Peter Jorth, Wendy Ni, Duncan Skerrett +6 more

Synergy Between Beta-Lactams and Lipo-, Glyco-, and Lipoglycopeptides, Is Independent of the Seesaw Effect in Methicillin-Resistant Staphylococcus aureus

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.688357

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0DataRank · unranked

16 citations

Ismael A Barreras Beltran, Nathaniel K. Ashford, Kelsi Penewit, Adam Waalkes, Elizabeth A. Holmes +5 more

A Population-level Strain Genotyping Method to Study Pathogen Strain Dynamics in Human Infections

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.02.450905

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0DataRank · unranked

1 citations

S. Durfey, Sumedha Ravishankar, Peter Jorth, Wendy Ni, Duncan Skerrett +6 more

Genome-wide protein-DNA interaction site mapping using a double strand DNA-specific cytosine deaminase

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.01.454665

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0DataRank · unranked

1 citations

Elena Velázquez, S. Brook Peterson, James C. Charity, FoSheng Hsu, Matthew C. Radey +12 more

Coordinately regulated interbacterial antagonism defense pathways constitute a bacterial innate immune system

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.22.457286

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0DataRank · unranked

1 citations

Kaitlyn D. LaCourse, Hannah E. Ledvina, Rutan Zhang, Matthew C. Radey, Hemantha D. Kulasekara +10 more

Aptamer Sandwich Lateral Flow Assay (AptaFlow) for Antibody-Free SARS-CoV-2 Detection

Analytical Chemistry(2022)10.1021/acs.analchem.2c00554

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0DataRank · unranked

64 citations

Nataly Kacherovsky, Nuttada Panpradist, Ruixuan Wan, Joey Liang, Bo Zhang +4 more

Discovery of a Transferrin Receptor 1-Binding Aptamer and Its Application in Cancer Cell Depletion for Adoptive T-Cell Therapy Manufacturing

Journal of the American Chemical Society(2022)10.1021/jacs.2c05349

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0DataRank · unranked

55 citations

Ian I. Cardle, Nataly Kacherovsky, Harsh Bansia, Tong Wang, Yunshi Zhou +8 more

Genome-wide protein–DNA interaction site mapping in bacteria using a double-stranded DNA-specific cytosine deaminase

Nature Microbiology(2022)10.1038/s41564-022-01133-9

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0DataRank · unranked

33 citations

Elena Velázquez, S. Brook Peterson, James C. Charity, Matthew C. Radey, Michael J. Gebhardt +16 more

Emergence of Dalbavancin, Vancomycin, and Daptomycin Nonsusceptible Staphylococcus aureus in a Patient Treated With Dalbavancin: Case Report and Isolate Characterization

Clinical Infectious Diseases(2022)10.1093/cid/ciac341

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0DataRank · unranked

35 citations

Hari Polenakovik, Ismael A Barreras Beltran, Adam Waalkes, Stephen J. Salipante, Libin Xu +2 more

Discovery of coordinately regulated pathways that provide innate protection against interbacterial antagonism

eLife(2022)10.7554/elife.74658

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0DataRank · unranked

26 citations

Kaitlyn D. LaCourse, Hannah E. Ledvina, Rutan Zhang, Matthew C. Radey, Hemantha D. Kulasekara +10 more

Genome Capture Sequencing Selectively Enriches Bacterial DNA and Enables Genome-Wide Measurement of Intrastrain Genetic Diversity in Human Infections

mBio(2022)10.1128/mbio.01424-22

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0DataRank · unranked

15 citations

Snehal Joshi, Matthew C. Radey, Anh T. Vo, Cara M Forsberg, Sarah J. Morgan +7 more

Genomic reconstruction and directed interventions in a multidrug-resistant Shigellosis outbreak in Seattle, WA, USA: a genomic surveillance study

The Lancet Infectious Diseases(2023)10.1016/s1473-3099(22)00879-9

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0DataRank · unranked

36 citations

Dustin R. Long, Adam Waalkes, Lori Bourassa, Stephen J. Libby, Kelsi Penewit +9 more

In Vitro Selection Identifies Staphylococcus aureus Genes Influencing Biofilm Formation

Infection and Immunity(2023)10.1128/iai.00538-22

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0DataRank · unranked

15 citations

Kelsi Penewit, Hsin‐Yu Lo, Jared Almazan, Elizabeth A. Holmes, Andrew Bryan +5 more

Discovery of a glutathione utilization pathway in Francisella that shows functional divergence between environmental and pathogenic species

Cell Host & Microbe(2023)10.1016/j.chom.2023.06.010

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0DataRank · unranked

11 citations

Hannah E. Ledvina, Catherine A. Tower, Stanimir Kambarev, Elizabeth Liu, James C. Charity +18 more

Transposon sequencing identifies genes impacting Staphylococcus aureus invasion in a human macrophage model

Infection and Immunity(2023)10.1128/iai.00228-23

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0DataRank · unranked

8 citations

Dustin R. Long, Elizbeth A. Holmes, Kelsi Penewit, Taylor Hodgson, Janessa D. Lewis +3 more

Diagnosis of Ovarian Carcinoma Homologous Recombination DNA Repair Deficiency From Targeted Gene Capture Oncology Assays

JCO Precision Oncology(2023)10.1200/po.22.00720

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0DataRank · unranked

6 citations

Nithisha Khasnavis, Marc R. Radke, Kalyan Banda, Helen Davies, Christopher C. Pennil +10 more

Pulmonary Co-Infections Detected Premortem Underestimate Postmortem Findings in a COVID-19 Autopsy Case Series

Pathogens(2023)10.3390/pathogens12070932

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0DataRank · unranked

4 citations

Benjamin T. Bradley, Nadia Nasir, Sydney R. Stein, Sabrina Ramelli, Marcos J. Ramos-Benítez +24 more

Discovery of a unique pathway for glutathione utilization in Francisella

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.02.526638

N/A

0DataRank · unranked

0 citations

Hannah E. Ledvina, Catherine A. Tower, Stanimir Kambarev, Elizabeth Liu, James C. Charity +17 more

543 Detailed profiling of the intestinal microbiome of children with cystic fibrosis treated with elexacaftor-tezacaftor-ivacaftor

Journal of Cystic Fibrosis(2023)10.1016/s1569-1993(23)01466-2

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0DataRank · unranked

0 citations

Seth A. Reasoner, Adam Waalkes, Kelsi Penewit, J. Stovall, Andrew G. Sokolow +6 more

Contribution of the patient microbiome to surgical site infection and antibiotic prophylaxis failure in spine surgery

Science Translational Medicine(2024)10.1126/scitranslmed.adk8222

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0DataRank · unranked

52 citations

Chloe Bryson‐Cahn, Adam Waalkes, Elizabeth A. Holmes, Kelsi Penewit, Celeste Tavolaro +7 more

Preventing Surgical Site Infections in the Era of Escalating Antibiotic Resistance and Antibiotic Stewardship

JAMA Surgery(2024)10.1001/jamasurg.2024.0429

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0DataRank · unranked

32 citations

Adam S. Cifu, Stephen J. Salipante, Robert G. Sawyer, Kaylie Machutta, John C. Alverdy +1 more

Longitudinal profiling of the intestinal microbiome in children with cystic fibrosis treated with elexacaftor-tezacaftor-ivacaftor

mBio(2024)10.1128/mbio.01935-23

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0DataRank · unranked

23 citations

Rachel Bernard, Adam Waalkes, Kelsi Penewit, Janessa D. Lewis, Andrew G. Sokolow +6 more

Alterations in the fecal microbiota in patients with advanced cystic fibrosis liver disease after 6 months of elexacaftor/tezacaftor/ivacaftor

Journal of Cystic Fibrosis(2024)10.1016/j.jcf.2024.02.015

N/A

0DataRank · unranked

12 citations

Christopher E. Pope, Hillary S. Hayden, Carson J. Miller, Stephen J. Salipante, Steven M. Rowe +6 more

Clinical and in vitro models identify distinct adaptations enhancing Staphylococcus aureus pathogenesis in human macrophages

PLoS Pathogens(2024)10.1371/journal.ppat.1012394

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0DataRank · unranked

4 citations

Elizabeth A. Holmes, Hsin‐Yu Lo, Kelsi Penewit, Jared Almazan, Taylor Hodgson +7 more

2023 Neer Award for Basic Science: Genetics of Cutibacterium acnes in revision shoulder arthroplasty: a large-scale bacterial whole-genome sequencing study

Journal of Shoulder and Elbow Surgery(2024)10.1016/j.jse.2024.02.039

N/A

0DataRank · unranked

7 citations

Frederick A. Matsen, Anastasia J. Whitson, Adam Waalkes, Jared Almazan, Lori Bourassa +3 more

Fecal microbiota changes in people with cystic fibrosis after 6 months of elexacaftor/tezacaftor/ivacaftor: Findings from the promise study

Journal of Cystic Fibrosis(2025)10.1016/j.jcf.2025.05.006

N/A

0DataRank · unranked

14 citations

Hillary S. Hayden, Adrian J. Verster, Christopher E. Pope, Carson J. Miller, Kelsi Penewit +9 more

Efficient and Traceless Aptamer‐Based Serial Selection of Naïve and Early Memory CD8 T Cells for CAR T Cell Therapy

Advanced Healthcare Materials(2025)10.1002/adhm.202502930

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0DataRank · unranked

2 citations

Emmeline L. Cheng, Nataly Kacherovsky, Abigail Marking, Arie Lin‐Goldstein, Clinton M. Heinze +4 more

Simulated exposures of oritavancin in in vitro pharmacodynamic models select for methicillin-resistant Staphylococcus aureus with reduced susceptibility to oritavancin but minimal cross-resistance or seesaw effect with other antimicrobials

Journal of Antimicrobial Chemotherapy(2025)10.1093/jac/dkaf042

N/A

0DataRank · unranked

2 citations

Rutan Zhang, Ismael A Barreras Beltran, Kelsi Penewit, Adam Waalkes, Elizabeth A. Holmes +3 more

Effects of Therapeutic Antibiotic Exposure on the Oropharyngeal and Fecal Microbiota in Infants With Cystic Fibrosis

Pediatric Pulmonology(2025)10.1002/ppul.71024

N/A

0DataRank · unranked

2 citations

Maria T. Nelson, Sydney E. Ross, Adrian J. Verster, Drake C. Bouzek, Alex Eng +9 more

SIV/SARS-CoV-2 coinfection in rhesus macaques impacts viral shedding, host immunity, the microbiome, and viral evolution

Frontiers in Immunology(2025)10.3389/fimmu.2025.1587688

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0DataRank · unranked

1 citations

Zohar Kolodner, Adam Waalkes, Kaitlin Sawatzki, Linhui Hao, Dustin R. Long +13 more

Identification of a novel tedizolid resistance mutation in rpoB of MRSA after in vitro serial passage

Journal of Antimicrobial Chemotherapy(2020)10.1093/jac/dkaa422

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0DataRank · unranked

13 citations

Kelsi Penewit, Adam Waalkes, Libin Xu, Stephen J. Salipante, Abhinav Nath +2 more

The type VI secretion system governs strain maintenance in a wild mammalian gut microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.29.690828

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0DataRank · unranked

1 citations

Kyle L. Asfahl, Bentley Lim, Savannah K Bertolli, Samuel S. Minot, Matthew C. Radey +8 more

Cell free DNA from respiratory pathogens is detectable in the blood plasma of Cystic Fibrosis patients

Scientific Reports(2020)10.1038/s41598-020-63970-0

N/A

0DataRank · unranked

26 citations

Elizabeth A. Holmes, Dustin R. Long, Ryan C. Shean, Gilbert E. Bautista, Sumedha Ravishankar +6 more