Ziyi Li

Also affiliated with Harbin Medical University, Shanghai Jiao Tong University, Chinese Academy of Medical Sciences & Peking Union Medical College, Singapore Immunology Network, Shanghai Chest Hospital, Third Affiliated Hospital of Harbin Medical University, Suzhou Institute of Systems Medicine, Institute of Natural Science

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 45 papers. Top paper: “Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy”.

Stem cell architecture drives myelodysplastic syndrome progression and predicts response to venetoclax-based therapy

Nature Medicine(2022)10.1038/s41591-022-01696-4

N/A

2.2DataRank · unranked

83 citations

Hui Yang, Feiyang Ma, Guillermo Montalban‐Bravo, Natthakan Thongon, Valentina Marchica +33 more

Accommodating Time-Varying Heterogeneity in Risk Estimation under the Cox Model: A Transfer Learning Approach

Journal of the American Statistical Association(2023)10.1080/01621459.2023.2210336

N/A

0.470DataRank · unranked

22 citations

Yu Shen, Jing Ning, Ziyi Li

Current gaps in emergency medicine core content education for oncologic emergencies: A targeted needs assessment

AEM Education and Training(2024)10.1002/aet2.10987

N/A

0.312DataRank · unranked

7 citations

Angela Lindsay, Moira Davenport, Nicholas Pettit, Jazmin R. Menendez, Ziyi Li +4 more

Severity of Symptoms as an Independent Predictor of Poor Outcomes in Patients with Advanced Cancer Presenting to the Emergency Department: Secondary Analysis of a Prospective Randomized Study

Cancers(2024)10.3390/cancers16233988

N/A

0.208DataRank · unranked

3 citations

Elizabeth Stroh, Cielito C. Reyes‐Gibby, Monica K. Wattana, Jayne Viets-Upchurch, Ziyi Li +5 more

Heightened expression of type I interferon signaling genes in CD4+ T cells from acutely HIV-1–infected women is associated with lower viral loads

Frontiers in Immunology(2025)10.3389/fimmu.2024.1507530

N/A

0.167DataRank · unranked

2 citations

Luxiao Chen, Khader Ghneim, Ziyi Li, Kelsie Brooks, Jake W. Rhodes +6 more

SCIntRuler: guiding the integration of multiple single-cell RNA-seq datasets with a novel statistical metric

Bioinformatics(2024)10.1093/bioinformatics/btae537

N/A

0.165DataRank · unranked

2 citations

Steven H. Lin, Hao Wu, Ziyi Li, Y B Lyu

CondiS web app: imputation of censored lifetimes for machine learning-based survival analysis

Bioinformatics(2022)10.1093/bioinformatics/btac461

N/A

0.104DataRank · unranked

1 citations

Christopher R. Flowers, Ziyi Li, Xuelin Huang, Yizhuo Wang

A comparative study of statistical methods for identifying differentially expressed genes in spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.17.638726

N/A

0.104DataRank · unranked

1 citations

Chenxuan Zang, Ziyi Li, Charles C. Guo, Dejian Lai, Peng Wei +1 more

Covariate adjustment in continuous biomarker assessment

Biometrics(2021)10.1111/biom.13601

N/A

0DataRank · unranked

3 citations

Yijian Huang, Dattatraya Patil, Martin G. Sanda, Ziyi Li

Application of machine learning methods in clinical trials for precision medicine

JAMIA Open(2022)10.1093/jamiaopen/ooab107

N/A

0DataRank · unranked

35 citations

Bing Z. Carter, Ziyi Li, Xuelin Huang, Yizhuo Wang

A comprehensive assessment of cell type-specific differential expression methods in bulk data

Briefings in Bioinformatics(2022)10.1093/bib/bbac516

N/A

0DataRank · unranked

18 citations

Wen Tang, Emina H. Huang, Ziyi Li, Hao Feng, Guanqun Meng

Large mid-upper arm circumference is associated with reduced insulin resistance independent of BMI and waist circumference: A cross-sectional study in the Chinese population

Frontiers in Endocrinology(2022)10.3389/fendo.2022.1054671

N/A

0DataRank · unranked

14 citations

Liyun He, Na Yang, Ziyi Li, Lingling Xu, Wei Li +4 more

Occupational and domestic physical activity and diabetes risk in adults: Results from a long-term follow-up cohort

Frontiers in Endocrinology(2022)10.3389/fendo.2022.1054046

N/A

0DataRank · unranked

10 citations

Liyun He, Na Yang, Ziyi Li, Lingling Xu, Wei Li +4 more

A machine learning-based method for automatically identifying novel cells in annotating single-cell RNA-seq data

Bioinformatics(2022)10.1093/bioinformatics/btac617

N/A

0DataRank · unranked

11 citations

Yizhuo Wang, Irene Gañán‐Gómez, Simona Colla, Kim‐Anh Do, Ziyi Li

EDClust: an EM–MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing

Bioinformatics(2022)10.1093/bioinformatics/btac168

N/A

0DataRank · unranked

9 citations

Ziyi Li, Hongkai Ji, Hao Wu, Xin Wei

CeDAR: incorporating cell type hierarchy improves cell type specific differential analyses in bulk omics data

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499410

N/A

0DataRank · unranked

2 citations

Ziyi Li, Hao Wu, Luxiao Chen

NeuCA web server: a neural network-based cell annotation tool with web-app and GUI

Bioinformatics(2022)10.1093/bioinformatics/btac108

N/A

0DataRank · unranked

0 citations

Sijia He, Emina H. Huang, Ziyi Li, Hao Feng, Daoyu Duan

Molecular parameters impacting the success rate of a lung cancer PDX model.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.e20592

N/A

0DataRank · unranked

0 citations

Shawna M. Hubert, Ran Zhang, Xingzhi Song, Tatiana V. Karpinets, Annikka Weissferdt +15 more

Mitochondrial regulation of GPX4 inhibition–mediated ferroptosis in acute myeloid leukemia

Leukemia(2023)10.1038/s41375-023-02117-2

N/A

0DataRank · unranked

50 citations

Ran Zhao, Lauren B. Ostermann, Ziyi Li, Matthew Tcheng, Samar J. Yazdani +13 more

Successful treatment of non-Langerhans cell histiocytosis with the MEK inhibitor trametinib: a multicenter analysis

Blood Advances(2023)10.1182/bloodadvances.2022009013

N/A

0DataRank · unranked

47 citations

Razelle Kurzrock, Gaurav Goyal, Aaron M. Goodman, Harsh Patel, Gordon Ruan +8 more

Anti–miR-93-5p therapy prolongs sepsis survival by restoring the peripheral immune response

Journal of Clinical Investigation(2023)10.1172/jci158348

N/A

0DataRank · unranked

32 citations

Enrique Fuentes‐Mattei, Melanie Winkle, Keishi Okubo, Recep Bayraktar, Erik Knutsen +34 more

Highly synchronized cortical circuit dynamics mediate spontaneous pain in mice

Journal of Clinical Investigation(2023)10.1172/jci166408

N/A

0DataRank · unranked

22 citations

Lukas Fischer, Qian Chen, Ziyi Li, Liuyue Yang, Zerong You +20 more

ISLET: individual-specific reference panel recovery improves cell-type-specific inference

Genome biology(2023)10.1186/s13059-023-03014-8

N/A

0DataRank · unranked

12 citations

Guanqun Meng, Tong Lin, Hemang Parikh, Yue Pan, Ziyi Li +3 more

Extracellular RNA Sensing Mediates Inflammation and Organ Injury in a Murine Model of Polytrauma

The Journal of Immunology(2023)10.4049/jimmunol.2300103

N/A

0DataRank · unranked

11 citations

Fengqian Chen, Sheng Wang, Ziyi Li, Jing Zhu, Yang Yang +13 more

CeDAR: incorporating cell type hierarchy improves cell type-specific differential analyses in bulk omics data

Genome biology(2023)10.1186/s13059-023-02857-5

N/A

0DataRank · unranked

17 citations

Ziyi Li, Hao Wu, Luxiao Chen

A novel statistical method for decontaminating T-cell receptor sequencing data

Briefings in Bioinformatics(2023)10.1093/bib/bbad230

N/A

0DataRank · unranked

3 citations

Mehmet Altan, Alexandre Reuben, Ruitao Lin, John V. Heymach, Hai T. Tran +6 more

Covariate‐specific evaluation of continuous biomarker

Statistics in Medicine(2023)10.1002/sim.9652

N/A

0DataRank · unranked

1 citations

Yijian Huang, Dattatraya Patil, Mark A. Rubin, Martin G. Sanda, Ziyi Li

ProtPipe: A Multifunctional Data Analysis Pipeline for Proteomics and Peptidomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571327

N/A

0DataRank · unranked

7 citations

Cory A. Weller, Syed Nisar Hussain Shah, Nicholas L. Johnson, Ying Hao, Jessica Roberts +15 more

MASH: Mediation Analysis of Survival Outcome and High-dimensional Omics Mediators with Application to Complex Diseases

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.22.554286

N/A

0DataRank · unranked

4 citations

Christopher R. Flowers, Ziyi Li, Xuelin Huang, Peng Wei, Sunyi Chi

MASH: Mediation analysis of survival outcome and high-dimensional omics mediators with application to complex diseases

The Annals of Applied Statistics(2024)10.1214/23-aoas1838

N/A

0DataRank · unranked

6 citations

Christopher R. Flowers, Ziyi Li, Xuelin Huang, Peng Wei, Sunyi Chi

CASi: A framework for cross-timepoint analysis of single-cell RNA sequencing data

Scientific Reports(2024)10.1038/s41598-024-58566-x

N/A

0DataRank · unranked

1 citations

Christopher R. Flowers, Michael Wang, Xuelin Huang, Ziyi Li, Yizhuo Wang

Accurate identification of locally aneuploid cells by incorporating cytogenetic information in single cell data analysis

Scientific Reports(2024)10.1038/s41598-024-75226-2

N/A

0DataRank · unranked

1 citations

Ruoxing Li, Irene Gañán‐Gómez, Hussein A. Abbas, Guillermo Garcia‐Manero, Wei Sun +1 more

Discordance in Acute Gastrointestinal Toxicity between Synchrotron-Based Proton and Linac-based Electron Ultra-High Dose Rate Irradiation

International Journal of Radiation Oncology*Biology*Physics(2025)10.1016/j.ijrobp.2025.01.007

N/A

0DataRank · unranked

16 citations

U Titt, Nolan Esplen, Luke Connell, Elise Konradsson, Ming Yang +10 more

Nucleotide motif-guided selection of plasma microRNA biomarkers in trauma

iScience(2025)10.1016/j.isci.2025.113569

N/A

0DataRank · unranked

3 citations

Ruoxing Li, Chien-Yu Lin, Chanhee Park, Sheng Wang, Andrew Suen +9 more

Investigating the oxygen dependence of FLASH-RT using electron paramagnetic resonance imaging

Radiotherapy and Oncology(2025)10.1016/j.radonc.2025.111329

N/A

0DataRank · unranked

2 citations

Grace Murley, Brett Velasquez, Elise Konradsson, Denae Neill, Luke Connell +8 more

Nucleotide motif-guided selection of plasma microRNA biomarkers for organ injury prediction in trauma

medRxiv(2025)10.1101/2025.03.02.25323184

N/A

0DataRank · unranked

0 citations

Ruoxing Li, Chien-Yu Lin, Chanhee Park, Sheng Wang, Andrew Suen +9 more

Robust partial reference-free cell composition estimation from tissue expression

Bioinformatics(2020)10.1093/bioinformatics/btaa184

N/A

0DataRank · unranked

33 citations

Zhenxing Guo, Ying Cheng, Peng Jin, Hao Wu, Ziyi Li

Impact of Boarding Time on In-Hospital Mortality in Patients Presenting to an Oncologic Emergency Department of a Comprehensive Cancer Center

Journal of the American College of Emergency Physicians Open(2025)10.1016/j.acepjo.2025.100261

N/A

0DataRank · unranked

0 citations

Denise Manon Langabeer, Valda D. Page, Ziyi Li, Aiham Qdaisat, Patricia Brock

Complete deconvolution of DNA methylation signals from complex tissues: a geometric approach

Bioinformatics(2020)10.1093/bioinformatics/btaa930

N/A

0DataRank · unranked

11 citations

Hao Wu, Ziyi Li, Weiwei Zhang

5-hydroxymethylcytosine is dynamically regulated during forebrain organoid development and aberrantly altered in Alzheimer’s disease

Cell Reports(2021)10.1016/j.celrep.2021.109042

N/A

0DataRank · unranked

61 citations

Junyu Chen, Emily C. Bruggeman, Feng Wang, Yangping Li, Chongchong Xu +8 more

A comprehensive comparison of supervised and unsupervised methods for cell type identification in single-cell RNA-seq

Briefings in Bioinformatics(2021)10.1093/bib/bbab567

N/A

0DataRank · unranked

60 citations

Xiaochu Lin, Ziyi Li, Hao Wu, Xiaobo Sun

Role of extracellular microRNA-146a-5p in host innate immunity and bacterial sepsis

iScience(2021)10.1016/j.isci.2021.103441

N/A

0DataRank · unranked

52 citations

Yang Yang, Andrew Suen, Jing Zhu, Brittney Williams, Jiang Hu +9 more

Stress modulates Ahi1-dependent nuclear localization of ten-eleven translocation protein 2

Human Molecular Genetics(2021)10.1093/hmg/ddab179

N/A

0DataRank · unranked

15 citations

Qicheng Hu, Junjie Wang, Zhigang Miao, Ziyi Li, Yuwen Zhao +6 more

Ectopic expression of CGG-repeats alters ovarian response to gonadotropins and leads to infertility in a murine FMR1 premutation model

Human Molecular Genetics(2021)10.1093/hmg/ddab083

N/A

0DataRank · unranked

15 citations

Nicholes R. Candelaria, Ziyi Li, Emily G. Allen, Peng Jin, David L. Nelson +1 more

Ten-eleven translocation 2 modulates allergic inflammation by 5-hydroxymethylcytosine remodeling of immunologic pathways

Human Molecular Genetics(2021)10.1093/hmg/ddab167

N/A

0DataRank · unranked

12 citations

Lei Gu, Yujing Li, Ronghua Li, Yiqu Cao, Ziyi Li +4 more