🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Joseph Beechem

Bruker (United States)

ORCID: 0000-0001-8372-5899

Also affiliated with CRC for Spatial information, University of Washington Bothell, Bruker (Switzerland)

Biochemistry, Genetics and Molecular BiologyChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile
0.263Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.16.658716
Top 59%
0.263DataRank
Top 59%4 citations

Roberto De Gregorio, Erika Hissong, Elif Ozcelik, Nicholas Bartelo, Felipe Segato Dezem +45 more

Papers

Driven by 15 papers — median percentile 41. Top paper: “COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets”.

COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets

Nature(2021)10.1038/s41586-021-03570-8
N/A
10.7DataRank · unranked
879 citations

Carly G.K. Ziegler, Graham Heimberg, Rachelly Normand, Yiming Yang, Åsa Segerstolpe +95 more

Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma

Nature Medicine(2021)10.1038/s41591-020-01212-6
N/A
3.5DataRank · unranked
127 citations

Cyril Neftel, Marni E. Shore, Hannah R. Weisman, Nathan D. Mathewson, Matthew J. McBride +50 more

Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.25.267336
N/A
1.6DataRank · unranked
35 citations

Karthik A. Jagadeesh, Jimmy A. Guo, Hannah I. Hoffman, Payman Yadollahpour, Rahul Mohan +46 more

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.27.514070
N/A
0.677DataRank · unranked
16 citations

Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey +63 more

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients

Genome Biology(2025)10.1186/s13059-025-03499-5
N/A
0.363DataRank · unranked
7 citations

Dimitra Karagkouni, Nikolaos Kalavros, Johannes C. Melms, Sebastian Niezen, Toni Marie Delorey +70 more

An information theoretic approach to detecting spatially varying genes

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100507
N/A
0.320DataRank · unranked
5 citations

Patrick Danaher, Young‐Mi Kim, Joseph Beechem, Raphaël Gottardo, Evan W. Newell +1 more

The Spatial Atlas of Human Anatomy (SAHA): A Multimodal Subcellular-Resolution Reference Across Human Organs

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.16.658716
Top 59%
0.263DataRank
Top 59%4 citations

Roberto De Gregorio, Erika Hissong, Elif Ozcelik, Nicholas Bartelo, Felipe Segato Dezem +45 more

An information theoretic approach to detecting spatially varying genes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.02.514777
N/A
0.165DataRank · unranked
2 citations

Patrick Danaher, Young‐Mi Kim, Joseph Beechem, Raphaël Gottardo, Evan W. Newell +1 more

Highly Multiplexed Spatially Resolved Proteomic and Transcriptional Profiling of the Glioblastoma Microenvironment Using Archived Formalin-Fixed Paraffin-Embedded Specimens

Modern Pathology(2023)10.1016/j.modpat.2022.100034
N/A
0DataRank · unranked
16 citations

Patrick Danaher, Patrick J. Cimino, Kyle Hurth, Sarah Warren, John Glod +4 more

High-Plex Spatial RNA Profiling Reveals Cell Type‒Specific Biomarker Expression during Melanoma Development

Journal of Investigative Dermatology(2021)10.1016/j.jid.2021.06.041
N/A
0DataRank · unranked
27 citations

Michelle Kriner, Samantha Wong, Guannan Zhu, Jessica R. Terrell, Qian Li +4 more

Multiplatform Analysis of Intratumoral PTEN Heterogeneity in Melanoma

Journal of Investigative Dermatology(2023)10.1016/j.jid.2023.01.034
N/A
0DataRank · unranked
4 citations

Mariana Petaccia de Macêdo, Fernando C. L. Carapeto, Feng Wang, Diego M. Marzese, Khalida Wani +12 more

Spatially resolved analysis of pancreatic cancer identifies therapy-associated remodeling of the tumor microenvironment

Nature Genetics(2024)10.1038/s41588-024-01890-9
N/A
0DataRank · unranked
72 citations

Jingyi Cao, Dennis Gong, Mark Gregory, Nicholas J Caldwell, Xunqin Yin +27 more

InSituCor: exploring spatially correlated genes conditional on the cell type landscape

Genome biology(2025)10.1186/s13059-025-03554-1
N/A
0DataRank · unranked
8 citations

Dan McGuire, Lidan Wu, Michael J. Patrick, David Kroeppler, Haiyan Zhai +7 more

Aggressive B cell lymphomas retain ATR-dependent determinants of T cell exclusion from the germinal center dark zone

Journal of Clinical Investigation(2025)10.1172/jci187371
N/A
0DataRank · unranked
1 citations

Giorgio Bertolazzi, Allison Chan, Giovanni Medico, Giulia Bastianello, Gaia Morello +44 more

Inter- and intra-tumor heterogeneity of metastatic prostate cancer determined by digital spatial gene expression profiling

Nature Communications(2021)10.1038/s41467-021-21615-4
N/A
0DataRank · unranked
299 citations

Michelle Kriner, Ilsa M. Coleman, Colm Morrissey, Martine P. Roudier, Lawrence D. True +10 more