🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Ruibin Liu

Beijing Institute of Technology

ORCID: 0000-0001-8395-9353

Also affiliated with University of Maryland, Baltimore, Liaoning University of Traditional Chinese Medicine, Liaoning Cancer Hospital & Institute, State Key Laboratory of Explosion Science and Safety Protection, University of Maryland, College Park, China Medical University

Materials ScienceEngineeringComputer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Assessment of proton-coupled conformational dynamics of SARS and MERS coronavirus papain-like proteases: Implication for designing broad-spectrum antiviral inhibitors”.

Assessment of proton-coupled conformational dynamics of SARS and MERS coronavirus papain-like proteases: Implication for designing broad-spectrum antiviral inhibitors

The Journal of Chemical Physics(2020)10.1063/5.0020458
N/A
0DataRank · unranked
67 citations

Neha Verma, Robert C. Harris, Ruibin Liu, Zhong‐Yin Zhang, Jack A. Henderson

Profiling MAP kinase cysteines for targeted covalent inhibitor design

RSC Medicinal Chemistry(2021)10.1039/d1md00277e
N/A
0DataRank · unranked
19 citations

Neha Verma, Jack A. Henderson, Shaoqi Zhan, Zhong‐Yin Zhang, Ruibin Liu

GPU-Accelerated All-atom Particle-Mesh Ewald Continuous Constant pH Molecular Dynamics in Amber

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.04.494833
N/A
0DataRank · unranked
4 citations

Ruibin Liu, Vinícius M. de Oliveira, Erik Vaquez Montelongo, Jack A. Henderson, Zhong‐Yin Zhang +1 more

Quantum Descriptors for Predicting and Understanding the Structure–Activity Relationships of Michael Acceptor Warheads

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00720
N/A
0DataRank · unranked
12 citations

Erik Antonio Vázquez-Montelongo, Shuhua Ma, Zhong‐Yin Zhang, Ruibin Liu

Analysis of the ERK Pathway Cysteinome for Targeted Covalent Inhibition of RAF and MEK Kinases

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00014
N/A
0DataRank · unranked
7 citations

Ruibin Liu, Shaoqi Zhan, Joseph Clayton, Zhong‐Yin Zhang, Aarion Romany

Structure-Kinetics Relationships of Opioids from Metadynamics and Machine Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.06.531338
N/A
0DataRank · unranked
2 citations

Ruibin Liu, Quynh N. Vo, Christopher R. Ellis, Lidiya Stavitskaya, Zhong‐Yin Zhang +1 more

Force Field Limitations of All-Atom Continuous Constant pH Molecular Dynamics

The Journal of Physical Chemistry B(2024)10.1021/acs.jpcb.4c05971
N/A
0DataRank · unranked
10 citations

Ruibin Liu, Zhong‐Yin Zhang, Craig A. Peeples

Why is the Omicron main protease of SARS-CoV-2 less stable than its wild-type counterpart? A crystallographic, biophysical, and theoretical study

hLife(2024)10.1016/j.hlife.2024.06.003
N/A
0DataRank · unranked
9 citations

Xinyuanyuan Sun, Vinícius M. de Oliveira, Ruibin Liu, Joseph Clayton, Haifa El Kilani +3 more

Machine Learned Classification of Ligand Intrinsic Activities at Human μ-Opioid Receptor

ACS Chemical Neuroscience(2024)10.1021/acschemneuro.4c00212
N/A
0DataRank · unranked
6 citations

Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Zhong‐Yin Zhang, Myongin Oh

Why is the Omicron main protease of SARS-CoV-2 less stable than its wild-type counterpart? A crystallographic, biophysical, and theoretical study of the free enzyme and its complex with inhibitor 13b-K

Inorg. Mater. (Engl. Transl.); (United States)(2024)10.1101/2024.03.04.583178
N/A
0DataRank · unranked
4 citations

Xinyuanyuan Sun, Vinícius M. de Oliveira, Ruibin Liu, Joseph Clayton, Haifa El Kilani +3 more

KaMLs for Predicting Protein p K a Values and Ionization States: Are Trees All You Need?

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.09.622800
N/A
0DataRank · unranked
3 citations

Daniel Kortzak, Simon Ambrozak, Shubham Bhatnagar, Ian Buchanan, Ruibin Liu +2 more

Force Field Limitations of All-Atom Continuous Constant pH Molecular Dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.03.611076
N/A
0DataRank · unranked
2 citations

Ruibin Liu, Zhong‐Yin Zhang, Craig A. Peeples

Machine Learned Classification of Ligand Intrinsic Activities at Human µ -Opioid Receptor

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.07.588485
N/A
0DataRank · unranked
1 citations

Maximilian Shen, Ruibin Liu, Lidiya Stavitskaya, Zhong‐Yin Zhang, Myongin Oh

KaMLs for Predicting Protein p K a Values and Ionization States: Are Trees All You Need?

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.4c01602
N/A
0DataRank · unranked
8 citations

Daniel Kortzak, Simon Ambrozak, Shubham Bhatnagar, Ian Buchanan, Ruibin Liu +2 more

Illuminating the Druggable Human Proteome with an AI Protein Profiling Platform

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.07.670677
N/A
0DataRank · unranked
0 citations

Daniel Kortzak, Ruibin Liu, Mingzhe Shen, Zhong-Yin Zhang, Zhong‐Yin Zhang +1 more

Illuminating the Druggable Proteome with an AI Protein Profiling Platform

Research Square(2025)10.21203/rs.3.rs-7667948/v1
N/A
0DataRank · unranked
0 citations

Guy W. Dayhoff, Daniel Kortzak, Ruibin Liu, Mingzhe Shen, Zhong-Yin Zhang +1 more