🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Yueyu Jiang

University of San Diego

ORCID: 0000-0001-8425-7556

Also affiliated with UC San Diego Health System, University of California San Diego, Universidad Católica Santo Domingo

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
6.0Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-01845-1
Top 5%
4.4DataRank
Top 5%629 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Papers

Driven by 10 papers — median percentile 91. Top paper: “Greengenes2 unifies microbial data in a single reference tree”.

Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-01845-1
Top 5%
4.4DataRank
Top 5%629 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Greengenes2 enables a shared data universe for microbiome studies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.19.520774
Top 13%
1.6DataRank
Top 13%44 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Author Correction: Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-02026-w
N/A
0.470DataRank · unranked
22 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach

Bioinformatics(2024)10.1093/bioinformatics/btae361
N/A
0.165DataRank · unranked
2 citations

Daniel McDonald, Daniela S. Perry, Rob Knight, Siavash Mirarab, Yueyu Jiang

Machine Learning Enables Alignment‐Free Distance Calculation and Phylogenetic Placement Using k ‐Mer Frequencies

Molecular Ecology Resources(2025)10.1111/1755-0998.70055
N/A
0DataRank · unranked
1 citations

Yueyu Jiang, Siavash Mirarab, Eleonora Rachtman

DEPP: Deep Learning Enables Extending Species Trees using Single Genes

Systematic Biology(2022)10.1093/sysbio/syac031
N/A
0DataRank · unranked
36 citations

Metin Balaban, Qiyun Zhu, Siavash Mirarab, Yueyu Jiang

Machine learning enables alignment-free distance calculation and phylogenetic placement using k-mer frequencies

(2025)10.22541/au.174539883.30231226/v1
N/A
0DataRank · unranked
1 citations

Yueyu Jiang, Siavash Mirarab, Eleonora Rachtman

Learning Hyperbolic Embedding for Phylogenetic Tree Placement and Updates

Biology(2022)10.3390/biology11091256
N/A
0DataRank · unranked
16 citations

Puoya Tabaghi, Siavash Mirarab, Yueyu Jiang

Generation of accurate, expandable phylogenomic trees with uDance

Nature Biotechnology(2023)10.1038/s41587-023-01868-8
N/A
0DataRank · unranked
22 citations

Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab +1 more

Author Correction: Generation of accurate, expandable phylogenomic trees with uDance

Nature Biotechnology(2023)10.1038/s41587-023-02027-9
N/A
0DataRank · unranked
0 citations

Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab +1 more