Davide Risso

Also affiliated with Tate & Lyle (United Kingdom)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

14.3Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0

Top 5%

4.3DataRank

Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

Papers

Driven by 32 papers — median percentile 87. Top paper: “Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia”.

Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia

Science Advances(2020)10.1126/sciadv.abc5801

N/A

16.7DataRank · unranked

1247 citations

Tatsuya Tsukahara, Caleb Weinreb, Marcela Lipovsek, Koen Van den Berge, Boying Gong +20 more

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0

Top 5%

4.3DataRank

Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03500-8

Top 5%

4.2DataRank

Top 5%389 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew I. Aldridge +81 more

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor

Bioinformatics(2022)10.1093/bioinformatics/btac299

Top 7%

3.1DataRank

Top 7%140 citations

Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado‐Torres, Shila Ghazanfar +4 more

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.29.970558

Top 13%

1.6DataRank

Top 13%63 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S. Adkins +78 more

Rapid non-uniform adaptation to conformation-specific KRAS(G12C) inhibition

Nature(2020)10.1038/s41586-019-1884-x

N/A

0.947DataRank · unranked

552 citations

Yulei Zhao, Jordan Aronowitz, Trang T. Mai, Alberto Vides, Besnik Qeriqi +7 more

Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects

Cell Reports Methods(2022)10.1016/j.crmeth.2022.100321

N/A

0.737DataRank · unranked

20 citations

Hsin-Jung Chou, Hector Roux de Bézieux, Kelly Street, Davide Risso, John Ngai +2 more

Curated Single Cell Multimodal Landmark Datasets for R/Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.27.466079

Top 45%

0.415DataRank

Top 45%4 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +7 more

Curated single cell multimodal landmark datasets for R/Bioconductor

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011324

Top 48%

0.375DataRank

Top 48%7 citations

Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger +6 more

Orchestrating Spatial Transcriptomics Analysis with Bioconductor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.20.688607

Top 59%

0.260DataRank

Top 59%3 citations

Yixing Dong, Ilaria Billato, Peiying Cai, Martin Emons, Samuel Gunz +29 more

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.03.974220

N/A

0.104DataRank · unranked

1 citations

Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca K. Chance, Davide Risso +5 more

PsiNorm: a scalable normalization for single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.07.438822

N/A

0DataRank · unranked

8 citations

Graziano Martello, Davide Risso, Chiara Romualdi, Matteo Borella

A species-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for preimplantation development

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.24.436683

N/A

0DataRank · unranked

4 citations

Wanqing Shao, Jingqi Chen, Angus Lee, Xin Qi, Mackenzie Noon +9 more

mbkmeans: fast clustering for single cell data using mini-batch k -means

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.27.119438

N/A

0DataRank · unranked

4 citations

Ruoxi Liu, Yuwei Ni, Elizabeth Purdom, Davide Risso, Stephanie C. Hicks

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data

Genome biology(2020)10.1186/s13059-020-02104-1

N/A

0DataRank · unranked

142 citations

Chiara Romualdi, Levi Waldron, Davide Risso, Nicola Vitulo, Matteo Calgaro

benchdamic: benchmarking of differential abundance methods for microbiome data

Bioinformatics(2022)10.1093/bioinformatics/btac778

N/A

0DataRank · unranked

8 citations

Chiara Romualdi, Davide Risso, Nicola Vitulo, Matteo Calgaro

A Bartlett-type correction for likelihood ratio tests with application to testing equality of Gaussian graphical models

Statistics & Probability Letters(2022)10.1016/j.spl.2022.109732

N/A

0DataRank · unranked

3 citations

Monica Chiogna, Vera Djordjilović, Davide Risso, Erika Banzato

Co-clustering of spatially resolved transcriptomic data

The Annals of Applied Statistics(2023)10.1214/22-aoas1677

N/A

0DataRank · unranked

10 citations

Davide Risso, Andrea Sottosanti

Structure learning for zero-inflated counts with an application to single-cell RNA sequencing data

The Annals of Applied Statistics(2023)10.1214/23-aoas1732

N/A

0DataRank · unranked

2 citations

Koen Van den Berge, Monica Chiogna, Davide Risso, Thi Kim Hue Nguyen

Juggling offsets unlocks RNA-seq tools for fast and Scalable differential usage, Aberrant Splicing and Expression Retrieval

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.29.547014

N/A

0DataRank · unranked

5 citations

Jeroen Gilis, Mattias Van Heetvelde, Davide Risso, Elfride De Baere, Lieven Clement +1 more

Differential detection workflows for multi-sample single-cell RNA-seq data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.17.572043

N/A

0DataRank · unranked

5 citations

Laura Perin, Milan Malfait, Koen Van den Berge, Alemu Takele Assefa, Bie Verbist +3 more

Structured factorization for single-cell gene expression data

arXiv (Cornell University)(2023)10.48550/arxiv.2305.11669

N/A

0DataRank · unranked

0 citations

Luisa Galtarossa, Davide Risso, Lorenzo Schiavon, Giovanni Toto, Antonio Canale

A Latent Activated Olfactory Stem Cell State Revealed by Single-Cell Transcriptomic and Epigenomic Profiling

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.26.564041

N/A

0DataRank · unranked

0 citations

Dana Bakalar, Hsin-Jung Chou, Divya Kunda, Davide Risso, Kelly Street +5 more

Exploring public cancer gene expression signatures across bulk, single-cell and spatial transcriptomics data with signifinder Bioconductor package

NAR Genomics and Bioinformatics(2024)10.1093/nargab/lqae138

N/A

0DataRank · unranked

8 citations

Laura Masatti, Anna Bortolato, Anna Corrà, Fabiola Pedrini, Martina Aere +6 more

Improving replicability in single-cell RNA-Seq cell type discovery with Dune

BMC Bioinformatics(2024)10.1186/s12859-024-05814-6

N/A

0DataRank · unranked

1 citations

Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca K. Chance, Davide Risso +5 more

Guided structure learning of DAGs for count data

Statistical Modelling(2024)10.1177/1471082x241266738

N/A

0DataRank · unranked

0 citations

Monica Chiogna, Davide Risso, Erika Banzato, Thi Kim Hue Nguyen

Differential detection workflows for multi-sample single-cell RNA-seq data

BMC Genomics(2025)10.1186/s12864-025-12102-x

N/A

0DataRank · unranked

0 citations

Laura Perin, Milan Malfait, Helena L. Crowell, Koen Van den Berge, Alemu Takele Assefa +4 more

Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.15.907964

N/A

0DataRank · unranked

3 citations

Chiara Romualdi, Levi Waldron, Davide Risso, Nicola Vitulo, Matteo Calgaro

Structured factorization for single-cell gene expression data

Journal of the Royal Statistical Society Series C: Applied Statistics(2026)10.1093/jrsssc/qlag009

N/A

0DataRank · unranked

0 citations

Luisa Galtarossa, Davide Risso, Lorenzo Schiavon, Giovanni Toto, Antonio Canale

A mouse-specific retrotransposon drives a conserved Cdk2ap1 isoform essential for development

Cell(2021)10.1016/j.cell.2021.09.021

N/A

0DataRank · unranked

124 citations

Wanqing Shao, Jingqi Chen, Angus Lee, Xin Qi, Mackenzie Noon +10 more

mbkmeans: Fast clustering for single cell data using mini-batch k-means

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008625

N/A

0DataRank · unranked

67 citations

Ruoxi Liu, Yuwei Ni, Elizabeth Purdom, Davide Risso, Stephanie C. Hicks

Per-sample standardization and asymmetric winsorization lead to accurate clustering of RNA-seq expression profiles

Bioinformatics(2021)10.1093/bioinformatics/btab091

N/A

0DataRank · unranked

8 citations

Stefano Maria Pagnotta, Davide Risso

Davide Risso

Indexed papers

Top data-sharing exemplar

Papers