Marinka Zitnik

Also affiliated with Harvard University, Lemuel Shattuck Hospital, Harvard University Press, Dana-Farber/Harvard Cancer Center, Artificial Intelligence in Medicine (Canada)

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.621Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Signals in the Cells: Multimodal and Contextualized Machine Learning Foundations for Therapeutics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.12.598655

Top 32%

0.621DataRank

Top 32%14 citations

Xiang Lin, Michelle M. Li, Kexin Huang, Wenhao Gao, Tianfan Fu +4 more

Papers

Driven by 46 papers — median percentile 68. Top paper: “TrustLLM: Trustworthiness in Large Language Models”.

TrustLLM: Trustworthiness in Large Language Models

arXiv (Cornell University)(2024)10.48550/arxiv.2401.05561

N/A

3.5DataRank · unranked

53 citations

Y. Huang, Haoran Wang, Siyuan Wu, Qihui Zhang, Chujie Gao +65 more

Current and future directions in network biology

Bioinformatics Advances(2024)10.1093/bioadv/vbae099

N/A

1.6DataRank · unranked

100 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

Biomonitoring and precision health in deep space supported by artificial intelligence

Nature Machine Intelligence(2023)10.1038/s42256-023-00617-5

N/A

1.3DataRank · unranked

57 citations

Lauren M. Sanders, Erik L. Antonsen, Jaden J. A. Hastings, Seung Min Park, Graham Mackintosh +51 more

Biological research and self-driving labs in deep space supported by artificial intelligence

Nature Machine Intelligence(2023)10.1038/s42256-023-00618-4

N/A

1.1DataRank · unranked

48 citations

Ryan T. Scott, Jason H. Yang, Héctor García Martín, Daniel C. Berrios, Jaden J. A. Hastings +54 more

Network Medicine Framework for Identifying Drug Repurposing Opportunities for COVID-19

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2025581118

N/A

0.942DataRank · unranked

534 citations

Ítalo Faria do Valle, Marinka Zitnik, Asher Ameli, Xiao Gan, Onur Varol +6 more

How to build the virtual cell with artificial intelligence: Priorities and opportunities

Cell(2024)10.1016/j.cell.2024.11.015

N/A

0.861DataRank · unranked

310 citations

Yusuf Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed +37 more

A foundation model for clinician-centered drug repurposing

Nature Medicine(2024)10.1038/s41591-024-03233-x

N/A

0.785DataRank · unranked

186 citations

Payal Chandak, Qianwen Wang, Shreyas Havaldar, Akhil Vaid, Jure Leskovec +5 more

Leveraging the Cell Ontology to classify unseen cell types

Nature Communications(2021)10.1038/s41467-021-25725-x

N/A

0.646DataRank · unranked

73 citations

Angela Oliveira Pisco, Aaron McGeever, Maria Brbić, Marinka Zitnik, Spyros Darmanis +4 more

Signals in the Cells: Multimodal and Contextualized Machine Learning Foundations for Therapeutics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.12.598655

Top 32%

0.621DataRank

Top 32%14 citations

Xiang Lin, Michelle M. Li, Kexin Huang, Wenhao Gao, Tianfan Fu +4 more

ProCyon: A multimodal foundation model for protein phenotypes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627665

N/A

0.391DataRank · unranked

8 citations

Yepeng Huang, Robert Calef, Valentina Giunchiglia, Tianlong Chen, George Dasoulas +19 more

Metapaths: similarity search in heterogeneous knowledge graphs via meta-paths

Bioinformatics(2023)10.1093/bioinformatics/btad297

N/A

0.330DataRank · unranked

8 citations

Michelle M. Li, Amelia L.M. Tan, Marinka Zitnik, Ayush Noori

Beyond Low Earth Orbit: Biomonitoring, Artificial Intelligence, and Precision Space Health

arXiv (Cornell University)(2021)10.48550/arxiv.2112.12554

N/A

0.330DataRank · unranked

8 citations

Erik L. Antonsen, Lauren M. Sanders, Jaden J. A. Hastings, Seung Min Park, Graham Mackintosh +51 more

Contrastive learning improves critical event prediction in COVID-19 patients

Patterns(2021)10.1016/j.patter.2021.100389

N/A

0.292DataRank · unranked

6 citations

Hossein Honarvar, Suraj K. Jaladanki, Chengxi Zang, Nidhi Naik, Sulaiman Somani +13 more

UniTS: A Unified Multi-Task Time Series Model

arXiv (Cornell University)(2024)10.48550/arxiv.2403.00131

N/A

0.269DataRank · unranked

3 citations

Teddy Koker, Owen Queen, Thomas Hartvigsen, Theodoros Tsiligkaridis, Marinka Zitnik +1 more

Beyond Low Earth Orbit: Biological Research, Artificial Intelligence, and Self-Driving Labs

arXiv (Cornell University)(2021)10.48550/arxiv.2112.12582

N/A

0.241DataRank · unranked

4 citations

Jason H. Yang, Ryan T. Scott, Amina A. Qutub, Héctor García Martín, Daniel C. Berrios +51 more

InfEHR: Clinical phenotype resolution through deep geometric learning on electronic health records

Nature Communications(2025)10.1038/s41467-025-63366-6

N/A

0.241DataRank · unranked

4 citations

Emma Holmes, Akhil Vaid, Alexander W. Charney, Patricia Kovatch, Joshua Lampert +6 more

CONCERT predicts niche-aware perturbation responses in spatial transcriptomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.08.686890

N/A

0.104DataRank · unranked

1 citations

Zhenglun Kong, Soumya Ghosh, Sharon L. R. Kardia, Marinka Zitnik, Xiang Lin

ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine

medRxiv(2024)10.1101/2024.12.03.24318322

N/A

0DataRank · unranked

9 citations

Uri Gottlieb, Galit Shaham, Lihi Eisen, Jacob Waxman, Stav Devons-Sberro +9 more

Efficient Generation of Protein Pockets with PocketGen

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.25.581968

N/A

0DataRank · unranked

6 citations

Wan Xiang Shen, Qi Liu, Marinka Zitnik, Zaixi Zhang

Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.03.573985

N/A

0DataRank · unranked

4 citations

Xiang Lin, Isuru Sachitha Herath, Kirill Veselkov, Michael M. Bronstein, Marinka Zitnik +1 more

Empowering Biomedical Discovery with AI Agents

arXiv (Cornell University)(2024)10.48550/arxiv.2404.02831

N/A

0DataRank · unranked

4 citations

Ada Fang, Yepeng Huang, Valentina Giunchiglia, Ayush Noori, Jonathan Richard Schwarz +4 more

KGARevion: An AI Agent for Knowledge-Intensive Biomedical QA

arXiv (Cornell University)(2024)10.48550/arxiv.2410.04660

N/A

0DataRank · unranked

4 citations

Yibo Wang, Shanghua Gao, Xiaolong Liu, Valentina Giunchiglia, Djork-Arné Clevert +2 more

Activity Cliff-Informed Contrastive Learning for Molecular Property Prediction

Research Square(2024)10.21203/rs.3.rs-2988283/v2

N/A

0DataRank · unranked

2 citations

Chao Cui, Xiaorui Su, Zaixi Zhang, Alejandro Velez Arce, Jianmin Wang +6 more

Few shot learning for phenotype-driven diagnosis of patients with rare genetic diseases

npj Digital Medicine(2025)10.1038/s41746-025-01749-1

N/A

0DataRank · unranked

28 citations

Michelle M. Li, Shilpa N. Kobren, Ayush Noori, Undiagnosed Diseases Network, Isaac S. Kohane +2 more

Combinatorial prediction of therapeutic perturbations using causally inspired neural networks

Nature Biomedical Engineering(2025)10.1038/s41551-025-01481-x

N/A

0DataRank · unranked

18 citations

Xiang Lin, Isuru S. Herath, Kirill Veselkov, Michael M. Bronstein, Marinka Zitnik +1 more

Learning Universal Representations of Intermolecular Interactions with ATOMICA

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.02.646906

N/A

0DataRank · unranked

7 citations

Michael Desgagné, Zaixi Zhang, Xiao‐Hua Zhou, Joseph Loscalzo, Bradley L. Pentelute +2 more

Multimodal Medical Code Tokenizer

arXiv (Cornell University)(2025)10.48550/arxiv.2502.04397

N/A

0DataRank · unranked

3 citations

Shvat Messica, Yepeng Huang, Ruth Johnson, Lukas Fesser, Shanghua Gao +3 more

Teaching large language models to reason like expert diagnosticians

ArXiv.org(2025)10.48550/arxiv.2509.12194

N/A

0DataRank · unranked

1 citations

Riccardo Conci, Peter G. Brodeur, Jason Gusdorf, Sourik Beltrán, Bita Behrouzi +18 more

Multimodal Retrieval of Genomics Data Visualizations

(2025)10.31219/osf.io/zatw9_v1

N/A

0DataRank · unranked

0 citations

Sehi L’Yi, Thomas Chris Smits, Shanghua Gao, Marinka Zitnik, Nils Gehlenborg +1 more

Geranium: Multimodal Retrieval of Genomics Data Visualizations

(2025)10.31219/osf.io/zatw9_v5

N/A

0DataRank · unranked

0 citations

Sehi L’Yi, Thomas Chris Smits, Shanghua Gao, Marinka Zitnik, Nils Gehlenborg +1 more

DeepPurpose: a deep learning library for drug–target interaction prediction

Bioinformatics(2020)10.1093/bioinformatics/btaa1005

N/A

0DataRank · unranked

484 citations

Tianfan Fu, Lucas M. Glass, Marinka Zitnik, Cao Xiao, Jimeng Sun +1 more

Identification of disease treatment mechanisms through the multiscale interactome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.30.069690

N/A

0DataRank · unranked

2 citations

Marinka Zitnik, Jure Leskovec, Camilo Ruiz

Identification of druggable host targets needed for SARS-CoV-2 infection by combined pharmacological evaluation and cellular network directed prioritization both in vitro and in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.20.440626

N/A

0DataRank · unranked

9 citations

Patrick T. Keiser, Deisy Morselli Gysi, Giulia Menichetti, Hiroyuki Mori, Callie J. Donahue +21 more

Sparse dictionary learning recovers pleiotropy from human cell fitness screens

Cell Systems(2022)10.1016/j.cels.2021.12.005

N/A

0DataRank · unranked

42 citations

Jason J. Kwon, Jessica A. Talamas, Ashir A. Borah, Francisca Vazquez, Jesse S. Boehm +5 more

Identification of potent inhibitors of SARS-CoV-2 infection by combined pharmacological evaluation and cellular network prioritization

iScience(2022)10.1016/j.isci.2022.104925

N/A

0DataRank · unranked

29 citations

Patrick T. Keiser, Deisy Morselli-Gysi, Giulia Menichetti, Hiroyuki Mori, Callie J. Donahue +21 more

Enhancing convolutional neural network predictions of electrocardiograms with left ventricular dysfunction using a novel sub-waveform representation

Cardiovascular Digital Health Journal(2022)10.1016/j.cvdhj.2022.07.074

N/A

0DataRank · unranked

12 citations

Chirag Agarwal, Sulaiman Somani, Akhil Vaid, Joshua Lampert, Tingyi Wanyan +7 more

Multimodal representation learning for predicting molecule–disease relations

Bioinformatics(2023)10.1093/bioinformatics/btad085

N/A

0DataRank · unranked

23 citations

Xiang Zhang, Everett Rush, Vidul Ayakulangara Panickan, Xingyu Li, Tianrun Cai +12 more

Structure-inducing pre-training

Nature Machine Intelligence(2023)10.1038/s42256-023-00647-z

N/A

0DataRank · unranked

20 citations

Brendan Yap, Peter Szolovits, Marinka Zitnik, Matthew B.A. McDermott

Domain Adaptation for Time Series Under Feature and Label Shifts

arXiv (Cornell University)(2023)10.48550/arxiv.2302.03133

N/A

0DataRank · unranked

17 citations

Owen Queen, Teddy Koker, Consuelo Cuevas, Theodoros Tsiligkaridis, Marinka Zitnik +1 more

Contextual AI models for single-cell protein biology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.18.549602

N/A

0DataRank · unranked

10 citations

Yepeng Huang, Marissa Sumathipala, Man Liang, Alberto Valdeolivas, Ashwin N. Ananthakrishnan +4 more

Current and future directions in network biology

arXiv (Cornell University)(2023)10.48550/arxiv.2309.08478

N/A

0DataRank · unranked

3 citations

Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Krishnan, Arjun +32 more

Graph AI in Medicine

arXiv (Cornell University)(2023)10.48550/arxiv.2310.13767

N/A

0DataRank · unranked

0 citations

Michelle M. Li, Ayush Noori, Owen Queen, Marinka Zitnik, Ruth Johnson

Empowering biomedical discovery with AI agents

Cell(2024)10.1016/j.cell.2024.09.022

N/A

0DataRank · unranked

257 citations

Ada Fang, Yepeng Huang, Valentina Giunchiglia, Ayush Noori, Jonathan Richard Schwarz +4 more

Graph Artificial Intelligence in Medicine

Annual Review of Biomedical Data Science(2024)10.1146/annurev-biodatasci-110723-024625

N/A

0DataRank · unranked

32 citations

Michelle M. Li, Ayush Noori, Owen Queen, Marinka Zitnik, Ruth Johnson

On knowing a gene: A distributional hypothesis of gene function

Cell Systems(2024)10.1016/j.cels.2024.04.008

N/A

0DataRank · unranked

16 citations

Joshua Pan, Guadalupe Gonzalez, William C. Hahn, Marinka Zitnik, Jason J. Kwon

Evaluating generalizability of artificial intelligence models for molecular datasets

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.25.581982

N/A

0DataRank · unranked

10 citations

Andrew Shen, Daria Bykova, Maximillian G. Marin, Marinka Zitnik, Maha R. Farhat +1 more

Marinka Zitnik

Indexed papers

Top data-sharing exemplar

Papers