🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jared Adolf‐Bryfogle

Janssen (United States)

ORCID: 0000-0001-8586-1907
MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
2.7Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

CoV3D: a database of high resolution coronavirus protein structures

Nucleic Acids Research(2020)10.1093/nar/gkaa731
Top 8%
2.7DataRank
Top 8%81 citations

Johnathan D. Guest, Rui Yin, Jared Adolf‐Bryfogle, William R. Schief, Brian G. Pierce +1 more

Papers

Driven by 14 papers — median percentile 92. Top paper: “CoV3D: a database of high resolution coronavirus protein structures”.

CoV3D: a database of high resolution coronavirus protein structures

Nucleic Acids Research(2020)10.1093/nar/gkaa731
Top 8%
2.7DataRank
Top 8%81 citations

Johnathan D. Guest, Rui Yin, Jared Adolf‐Bryfogle, William R. Schief, Brian G. Pierce +1 more

Hiding in plain sight: structure and sequence analysis reveals the importance of the antibody DE loop for antibody-antigen binding

mAbs(2020)10.1080/19420862.2020.1840005
N/A
0DataRank · unranked
37 citations

Jared Adolf‐Bryfogle, Roland L. Dunbrack, Simon Kelow

Better together: Elements of successful scientific software development in a distributed collaborative community

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007507
N/A
0DataRank · unranked
44 citations

Brian D. Weitzner, P. Douglas Renfrew, Steven M. Lewis, Rocco Moretti, Andrew M. Watkins +20 more

Hiding in plain sight: structure and sequence analysis reveals the importance of the antibody DE loop for antibody-antigen binding

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.946350
N/A
0DataRank · unranked
6 citations

Jared Adolf‐Bryfogle, Roland L. Dunbrack, Simon Kelow

PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design

Preprints.org(2020)10.20944/preprints202002.0097.v1
N/A
0DataRank · unranked
4 citations

Jared Adolf‐Bryfogle, Jason C. Klima, Sergey Lyskov, Jason W. Labonte, Steven J. Bertolani +16 more

Modeling Immunity with Rosetta: Methods for Antibody and Antigen Design

Biochemistry(2021)10.1021/acs.biochem.0c00912
N/A
0DataRank · unranked
62 citations

Samuel Schmitz, Jared Adolf‐Bryfogle, Alexander M. Sevy, Jessica A. Finn, Marion F. Sauer +20 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

Nature Communications(2021)10.1038/s41467-021-27222-7
N/A
0DataRank · unranked
27 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +45 more

Biochemical and structural characterization of two cif-like epoxide hydrolases from Burkholderia cenocepacia

Current Research in Structural Biology(2021)10.1016/j.crstbi.2021.02.002
N/A
0DataRank · unranked
4 citations

Kelli L. Hvorecny, Cassandra M. Burke, Morgan S. A. Gilman, Gary E. Heussler, Jared Adolf‐Bryfogle +4 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438423
N/A
0DataRank · unranked
4 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +43 more

Biochemical and Structural Characterization of Two Cif-Like Epoxide Hydrolases from Burkholderia cenocepacia

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.20.427036
N/A
0DataRank · unranked
0 citations

Kelli L. Hvorecny, Cassandra M. Burke, Morgan S. A. Gilman, Gary E. Heussler, Jared Adolf‐Bryfogle +4 more

A penultimate classification of canonical antibody CDR conformations

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.12.511988
N/A
0DataRank · unranked
16 citations

Bulat Faezov, Qifang Xu, Mitchell I. Parker, Jared Adolf‐Bryfogle, Roland L. Dunbrack +1 more

Deep Evolutionary Forecasting identifies highly-mutated SARS-CoV-2 variants via functional sequence-landscape enumeration

Research Square(2022)10.21203/rs.3.rs-2248327/v1
N/A
0DataRank · unranked
0 citations

Jelena Vučinić, Jared Adolf‐Bryfogle, James W. Bowman, Sebástien Vérel, Isabelle Moczygemba +4 more

Complete Combinatorial Mutational Enumeration of a protein functional site enables sequence-landscape mapping and identifies highly-mutated variants that retain activity

Research Square(2023)10.21203/rs.3.rs-2248327/v2
N/A
0DataRank · unranked
0 citations

Jelena Vučinić, Jared Adolf‐Bryfogle, James W. Bowman, Sebástien Vérel, Isabelle Moczygemba +4 more

Complete combinatorial mutational enumeration of a protein functional site enables sequence‐landscape mapping and identifies highly‐mutated variants that retain activity

Protein Science(2024)10.1002/pro.5109
N/A
0DataRank · unranked
5 citations

Jelena Vučinić, Jared Adolf‐Bryfogle, James W. Bowman, Sebástien Vérel, Isabelle Moczygemba +4 more