Yukari C. Manabe

Also affiliated with Johns Hopkins Medicine, Infectious Diseases Institute, Makerere University

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

2.1Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The clinical course of COVID-19 in the outpatient setting: a prospective cohort study

medRxiv(2020)10.1101/2020.09.01.20184937

Top 18%

1.1DataRank

Top 18%21 citations

Diane Brown, Minyoung Jang, Annukka A.R. Antar, Jeanne Keruly, Vismaya S. Bachu +7 more

Papers

Driven by 125 papers — median percentile 80. Top paper: “The clinical course of COVID-19 in the outpatient setting: a prospective cohort study”.

The clinical course of COVID-19 in the outpatient setting: a prospective cohort study

medRxiv(2020)10.1101/2020.09.01.20184937

Top 18%

1.1DataRank

Top 18%21 citations

Diane Brown, Minyoung Jang, Annukka A.R. Antar, Jeanne Keruly, Vismaya S. Bachu +7 more

The RADx Tech Clinical Studies Core: A Model for Academic Based Clinical Studies

IEEE Open Journal of Engineering in Medicine and Biology(2021)10.1109/ojemb.2021.3070830

Top 21%

0.957DataRank

Top 21%18 citations

Nisha Fahey, Nathaniel Hafer, Bryan Buchholz, Denise Dunlap, Robert L. Murphy +20 more

Performance of Rapid Antigen Tests to Detect Symptomatic and Asymptomatic SARS-CoV-2 Infection

medRxiv(2022)10.1101/2022.08.05.22278466

N/A

0.704DataRank · unranked

15 citations

Carly Herbert, Honghuang Lin, Yan Yi, Caitlin Pretz, Pamela Stamegna +39 more

Comparison of the analytical sensitivity of seven commonly used commercial SARS-CoV-2 automated molecular assays

Journal of Clinical Virology(2020)10.1016/j.jcv.2020.104578

N/A

0.670DataRank · unranked

86 citations

Justin Hardick, Elizabeth Morehead, Jo-Anne Miller, Charlotte A. Gaydos, Yukari C. Manabe +1 more

A portable magnetofluidic platform for detecting sexually transmitted infections and antimicrobial susceptibility

Science Translational Medicine(2021)10.1126/scitranslmed.abf6356

N/A

0.628DataRank · unranked

65 citations

Johan H. Melendez, Fan‐En Chen, Liben Chen, Annet Onzia, Aidah Zawedde +13 more

Evaluation of Serological SARS-CoV-2 Lateral Flow Assays for Rapid Point-of-Care Testing

Journal of Clinical Microbiology(2020)10.1128/jcm.02020-20

N/A

0.624DataRank · unranked

63 citations

Kathryn R. Martin, Yukari C. Manabe, H Schmidt, Jernelle Miller, Morgan Keruly +17 more

High Burden of Bloodstream Infections Associated With Antimicrobial Resistance and Mortality in the Neonatal Intensive Care Unit in Pune, India

Clinical Infectious Diseases(2020)10.1093/cid/ciaa554

N/A

0.590DataRank · unranked

50 citations

Matthew L. Robinson, Uday Rajput, Chhaya Valvi, Aarti Kinikar, Tushar Parikh +12 more

Low male partner attendance after syphilis screening in pregnant women leads to worse birth outcomes: the Syphilis Treatment of Partners (STOP) randomised control trial

Sexual Health(2020)10.1071/sh19092

N/A

0.571DataRank · unranked

44 citations

Joshua Kimeze, Edith Nakku-Joloba, Matthew M. Hamill, Mariam Namawejje, Agnes Kiragga +5 more

Daily sampling of early SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness

medRxiv(2021)10.1101/2021.07.12.21260208

N/A

0.533DataRank · unranked

34 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Agha Zeeshan Mirza, Madison Conte +33 more

Pregnancy alters interleukin-1 beta expression and antiviral antibody responses during severe acute respiratory syndrome coronavirus 2 infection

American Journal of Obstetrics and Gynecology(2021)10.1016/j.ajog.2021.03.028

N/A

0.524DataRank · unranked

32 citations

Jun Lei, Patrick S. Creisher, Minyoung Jang, Ramya Reddy, Kristin Voegtline +19 more

Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection

Journal of Virology(2024)10.1128/jvi.01618-23

N/A

0.477DataRank · unranked

23 citations

Katia Koelle, Michael A. Martin, Laura Gibson, Kimberly K. O. Walden, Gloria Rendon +11 more

Chest X-ray interpretation does not complement Xpert MTB/RIF in diagnosis of smear-negative pulmonary tuberculosis among TB-HIV co-infected adults in a resource-limited setting

BMC Infectious Diseases(2021)10.1186/s12879-020-05752-7

N/A

0.449DataRank · unranked

19 citations

John Mark Bwanika, Willy Ssengooba, Frank Mubiru, Damalie Nakanjako, Moses Joloba +3 more

Delayed Rise of Oral Fluid Antibodies, Elevated BMI, and Absence of Early Fever Correlate With Longer Time to SARS-CoV-2 RNA Clearance in a Longitudinally Sampled Cohort of COVID-19 Outpatients

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab195

N/A

0.449DataRank · unranked

19 citations

Tong Yu, Nora Pisanic, Răzvan Azamfirei, Jeffrey A. Tornheim, Diane Brown +39 more

Early, Robust Mucosal Secretory Immunoglobulin A but not Immunoglobulin G Response to Severe Acute Respiratory Syndrome Coronavirus 2 Spike in Oral Fluid Is Associated With Faster Viral Clearance and Coronavirus Disease 2019 Symptom Resolution

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae447

N/A

0.442DataRank · unranked

18 citations

Annukka A.R. Antar, Marissa K. Hetrich, Zoe O Demko, Xueyan Zhang, Kristoffer Spicer +11 more

Preclinical Validation of a Novel Injection-Molded Swab for the Molecular Assay Detection of SARS-CoV-2

Diagnostics(2022)10.3390/diagnostics12010206

N/A

0.430DataRank · unranked

5 citations

Devon R. Hartigan, Justin P. Hardick, Rebecca Gore, Miryam Adelfio, Anyelo R. Diaz +5 more

Landscape Review of Mail-in Self-Collection, Programs for Sexually Transmitted Infections

Sexually Transmitted Diseases(2023)10.1097/olq.0000000000001787

N/A

0.416DataRank · unranked

8 citations

Gretchen Armington, Rachel Fink, Charlotte A. Gaydos, Yukari C. Manabe, Miya F. Pontes

Within-host evolutionary dynamics and tissue compartmentalization during acute SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.21.497047

N/A

0.396DataRank · unranked

13 citations

Katia Koelle, Michael A. Martin, Laura Gibson, Kimberly K. O. Walden, Gloria Rendon +11 more

The impact of COVID-19 pandemic on technologic and process innovation in point-of-care diagnostics for sexually transmitted infections

Clinical Biochemistry(2021)10.1016/j.clinbiochem.2021.11.003

N/A

0.385DataRank · unranked

12 citations

Yukari C. Manabe

Higher colorectal tissue HIV infectivity in cisgender women compared with MSM before and during oral preexposure prophylaxis

AIDS(2021)10.1097/qad.0000000000002907

N/A

0.385DataRank · unranked

12 citations

Ian McGowan, Krista Yuhas, Rhonda M. Brand, Mark A. Marzinke, Yukari C. Manabe +15 more

Local emergence and global evolution of Neisseria gonorrhoeae with high-level resistance to azithromycin

Antimicrobial Agents and Chemotherapy(2024)10.1128/aac.00927-24

N/A

0.373DataRank · unranked

11 citations

Vonetta L. Edwards, Adamaris Muñiz Tirado, Justin Hardick, Aditya Mehta, Jain Aluvathingal +5 more

The contribution of late HIV diagnosis on the occurrence of HIV-associated tuberculosis

AIDS(2022)10.1097/qad.0000000000003321

N/A

0.330DataRank · unranked

8 citations

Yanink Caro‐Vega, Alessandro Cozzi‐Lepri, Joseph Musaazi, Gabriela Carriquiry, Barbara Castelnuovo +7 more

Respiratory viruses in rural Zambia during the second year of the COVID-19 pandemic

IJID Regions(2023)10.1016/j.ijregi.2023.07.003

N/A

0.312DataRank · unranked

7 citations

Mutinta Hamahuwa, Evan Miller, Pamela Sinywimaanzi, Justin Hardick, Juliet Morales +9 more

Functional adrenal insufficiency among tuberculosis-human immunodeficiency virus co-infected patients: a cross-sectional study in Uganda

BMC Research Notes(2020)10.1186/s13104-020-05064-8

N/A

0.312DataRank · unranked

7 citations

Andrew Mujugira, David B. Meya, Irene Andia Biraro, Ezekiel Mupere, William Worodria +2 more

Clustering of SARS-CoV-2 Infections in Households of Patients Diagnosed in the Outpatient Setting in Baltimore, Maryland

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab121

N/A

0.292DataRank · unranked

6 citations

Annukka A.R. Antar, Paul W. Blair, Anastasia S. Lambrou, Tong Yu, Diane Brown +34 more

Urine Lipoarabinomannan Testing in Adults With Advanced Human Immunodeficiency Virus in a Trial of Empiric Tuberculosis Therapy

Clinical Infectious Diseases(2021)10.1093/cid/ciab179

N/A

0.292DataRank · unranked

6 citations

Gregory P. Bisson, Amita Gupta, Sachiko Miyahara, Xin Sun, Carrie Fry +11 more

Long COVID brain fog and muscle pain are associated with longer time to clearance of SARS-CoV-2 RNA from the upper respiratory tract during acute infection

medRxiv(2023)10.1101/2023.01.18.23284742

N/A

0.292DataRank · unranked

6 citations

Tong Yu, Zoe O Demko, Chen Hu, Jeffrey A. Tornheim, Paul W. Blair +4 more

The Clinical Review Committee: Impact of the Development of In Vitro Diagnostic Tests for SARS-CoV-2 Within RADx Tech

IEEE Open Journal of Engineering in Medicine and Biology(2021)10.1109/ojemb.2021.3070818

N/A

0.292DataRank · unranked

6 citations

Charlotte A. Gaydos, Barbara Van Der Pol, Sally M. McFall, Yu‐Hsiang Hsieh, William Clarke +11 more

Metagenomic next generation sequencing of plasma RNA for diagnosis of unexplained, acute febrile illness in Uganda

PLoS neglected tropical diseases(2024)10.1371/journal.pntd.0012451

N/A

0.269DataRank · unranked

5 citations

Paul W. Blair, Jennifer Lu, Raghavendran Anantharam, Kenneth Kobba, Matthew L. Robinson +9 more

Sex Differences in the Prevalence of Geriatric Syndromes Among Older People Living with HIV Attending an Urban Outpatient Clinic in Kampala, Uganda

HIV/AIDS - Research and Palliative Care(2024)10.2147/hiv.s489598

N/A

0.269DataRank · unranked

5 citations

Grace Banturaki, Suzan Naikoba, Esther Nasuuna, Yukari C. Manabe, Meredith Greene +2 more

Accelerating Human Immunodeficiency Virus Self-Testing in the United States: A Call to Action

Clinical Infectious Diseases(2023)10.1093/cid/ciad025

N/A

0.269DataRank · unranked

5 citations

Robin J. MacGowan, Jonathan Mermin, S. Michele Owen, Yukari C. Manabe, Stephany Ma

Divergent neuroimmune signatures in the cerebrospinal fluid predict differential gender-specific survival among patients with HIV-associated cryptococcal meningitis

Frontiers in Immunology(2023)10.3389/fimmu.2023.1275443

N/A

0.247DataRank · unranked

4 citations

David R. Boulware, Elizabeth C Okafor, Joshua Rhein, Henry Kajumbula, Bernard S. Bagaya +6 more

Development of a Rapid Automated Point-of-Care Test for Hepatitis C Viral RNA on the DASH Rapid Polymerase Chain Reaction System

The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf608

N/A

0.241DataRank · unranked

4 citations

Matthew A. Butzler, Claudia Hawkins, Yukari C. Manabe, Jeffrey P. Holden, David L. Thomas +3 more

An Evaluation of the Performance, Patient Acceptability, and Feasibility of a Point-of-Care HIV-Syphilis Assay in an Urban Emergency Department

Sexually Transmitted Diseases(2024)10.1097/olq.0000000000001995

N/A

0.241DataRank · unranked

4 citations

Yu‐Hsiang Hsieh, Deanna Curbeam, Ann Rizkallah, Danielle A. Perez, Gaby Dashler +7 more

Effectiveness of Double-Dose Dolutegravir in People Receiving Rifampin-based Tuberculosis Treatment: An Observational, Cohort Study of People With HIV From 6 Countries

Clinical Infectious Diseases(2024)10.1093/cid/ciae269

N/A

0.241DataRank · unranked

4 citations

Cissy Kityo, Michael D. Hughes, Caitlyn McCarthy, Carole L. Wallis, Mina C. Hosseinipour +28 more

Performance of and Severe Acute Respiratory Syndrome Coronavirus 2 Diagnostics Based on Symptom Onset and Close Contact Exposure: An Analysis From the Test Us at Home Prospective Cohort Study

Open Forum Infectious Diseases(2024)10.1093/ofid/ofae304

N/A

0.208DataRank · unranked

3 citations

Biqi Wang, Honghuang Lin, Yan Yi, Nathaniel Hafer, Caitlin Pretz +29 more

High level of HIV viral suppression in a cross-sectional study of Ugandan men with urethritis and bacterial STI

International Journal of STD & AIDS(2023)10.1177/09564624231193491

N/A

0.165DataRank · unranked

2 citations

Oliver Laeyendecker, Sharada Saraf, Swetha Ashokkumar, Annet Onzia, Johan H. Melendez +7 more

Emergency Myelopoiesis Distinguishes Multisystem Inflammatory Syndrome in Children From Pediatric Severe Coronavirus Disease 2019

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae032

N/A

0.165DataRank · unranked

2 citations

T. Andargie, T Scott Johnston, Oren Gordon, Yi Wang, Nadine Peart Akindele +10 more

The Critical Importance of Clinical Use Case to Inform Point-of-Care Technology Development: A Case Study of HIV Nucleic Acid Assays in the United States

Clinical Infectious Diseases(2025)10.1093/cid/ciaf510

N/A

0.165DataRank · unranked

2 citations

Matthew M. Hamill, Kara Palamountain, Chad J. Achenbach, Kevin P. Delaney, Yu‐Hsiang Hsieh +9 more

Age Patterns of HSV-2 Incidence and Prevalence in Two Ugandan Communities: A Catalytic Incidence Model Applied to Population-Based Seroprevalence Data

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad113

N/A

0.104DataRank · unranked

1 citations

Ronald M. Galiwango, Josephine Mpagazi, Aaron A.R. Tobian, Robert Ssekubugu, Jade Jackson +16 more

Added Value of Extragenital Sexually Transmitted Infection Testing in “IWantTheKit” Program Users

Sexually Transmitted Diseases(2023)10.1097/olq.0000000000001743

N/A

0.104DataRank · unranked

1 citations

Johan H. Melendez, Gretchen S. Armington, Barbara Silver, Charlotte A. Gaydos, Kenneth Ruby +5 more

Optimal decision theory for diagnostic testing: Minimizing indeterminate classes with applications to saliva-based SARS-CoV-2 antibody assays

Mathematical Biosciences(2022)10.1016/j.mbs.2022.108858

N/A

0DataRank · unranked

0 citations

Prajakta Bedekar, Nora Pisanic, Yukari C. Manabe, David L. Thomas, Christopher D. Heaney +2 more

Telemedicine Use Among People with HIV in 2021: The Hybrid-Care Environment

medRxiv(2022)10.1101/2022.06.27.22276960

N/A

0DataRank · unranked

0 citations

Geetanjali Chander, Joyce Jones, Anthony T. Fojo, Jeanne Keruly, Yukari C. Manabe +4 more

Aetiology of Hospitalized Fever and Risk of Death at Two Rural Tertiary Care Hospitals in Uganda from August 2019 to August 2020

Research Square(2022)10.21203/rs.3.rs-1808975/v1

N/A

0DataRank · unranked

0 citations

Kenneth Kobba, Francis Kakooza, Matthew L. Robinson, Emmanuel Candia, Jonathan Mayito +7 more

Mycobacterium tuberculosis disease associates with higher HIV-1-specific antibody responses

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.02.518812

N/A

0DataRank · unranked

0 citations

Lydia Nakiyingi, Yvetane Moreau, Ethel Nankya, Alex Olson, Mo Zhang +7 more

Long COVID brain fog and muscle pain are associated with longer time to clearance of SARS-CoV-2 RNA from the upper respiratory tract during acute infection

Frontiers in Immunology(2023)10.3389/fimmu.2023.1147549

N/A

0DataRank · unranked

49 citations

Tong Yu, Zoe O Demko, Chen Hu, Jeffrey A. Tornheim, Paul W. Blair +3 more

Performance of Rapid Antigen Tests to Detect Symptomatic and Asymptomatic SARS-CoV-2 Infection

Annals of Internal Medicine(2023)10.7326/m23-0385

N/A

0DataRank · unranked

46 citations

Carly Herbert, Honghuang Lin, Yan Yi, Caitlin Pretz, Pamela Stamegna +39 more

Maternal Colonization Versus Nosocomial Transmission as the Source of Drug-Resistant Bloodstream Infection in an Indian Neonatal Intensive Care Unit: A Prospective Cohort Study

Clinical Infectious Diseases(2023)10.1093/cid/ciad282

N/A

0DataRank · unranked

24 citations

Julia Johnson, Shilpa Naik, Sunil Patil, Rajesh Kulkarni, Aarti Kinikar +15 more

Increased uptake of tuberculosis preventive therapy (TPT) among people living with HIV following the 100-days accelerated campaign: A retrospective review of routinely collected data at six urban public health facilities in Uganda

PLoS ONE(2023)10.1371/journal.pone.0268935

N/A

0DataRank · unranked

23 citations

Christine Sekaggya‐Wiltshire, Stephen Okoboi, Stella Zawedde‐Muyanja, Mbazi Senkoro, Nelson Kalema +6 more

Methodological approaches to optimize multiplex oral fluid SARS-CoV-2 IgG assay performance and correlation with serologic and neutralizing antibody responses

Journal of Immunological Methods(2023)10.1016/j.jim.2023.113440

N/A

0DataRank · unranked

16 citations

Annukka A.R. Antar, Kate Kruczynski, Magdielis Gregory Rivera, Santosh Dhakal, Kristoffer Spicer +10 more

Bloodstream infections in neonates with central venous catheters in three tertiary neonatal intensive care units in Pune, India

Journal of Neonatal-Perinatal Medicine(2023)10.3233/npm-221110

N/A

0DataRank · unranked

7 citations

Tushar Parikh, Bharat Randive, Aarti Kinikar, Uday Rajput, Chhaya Valvi +14 more

Effect of the relationship between anaemia and systemic inflammation on the risk of incident tuberculosis and death in people with advanced HIV: a sub-analysis of the REMEMBER trial

EClinicalMedicine(2023)10.1016/j.eclinm.2023.102030

N/A

0DataRank · unranked

10 citations

Sonya Krishnan, Padmini Salgame, Yukari C. Manabe, Mina C. Hosseinipour, Gregory P. Bisson +18 more

Design and implementation of a digital site-less clinical study of serial rapid antigen testing to identify asymptomatic SARS-CoV-2 infection

Journal of Clinical and Translational Science(2023)10.1017/cts.2023.540

N/A

0DataRank · unranked

10 citations

Carly Herbert, Caitlin Pretz, Pamela Stamegna, Andreas Filippaios, Qiming Shi +37 more

Highlighting and addressing barriers to widespread adaptation of HIV self-testing in the United States

Expert Review of Molecular Diagnostics(2023)10.1080/14737159.2023.2187291

N/A

0DataRank · unranked

6 citations

Yukari C. Manabe, Stephany Ma

Differential Viral Dynamics by Sex and Body Mass Index During Acute SARS-CoV-2 Infection: Results From a Longitudinal Cohort Study

Clinical Infectious Diseases(2023)10.1093/cid/ciad701

N/A

0DataRank · unranked

5 citations

Yukari C. Manabe, Andreas Filippaios, Honghuang Lin, Biqi Wang, Chad J. Achenbach +13 more

COVID-19 Serology at Population Scale: SARS-CoV-2-Specific Antibody Responses in Saliva

Journal of Clinical Microbiology(2020)10.1128/jcm.02204-20

N/A

0DataRank · unranked

260 citations

Pranay R. Randad, Kate Kruczynski, Yukari C. Manabe, David L. Thomas, Andrew Pekosz +16 more

Autoantibodies in post-treatment Lyme disease and association with clinical symptoms

Clinical and Experimental Rheumatology(2023)10.55563/clinexprheumatol/qcupkk

N/A

0DataRank · unranked

4 citations

Alison W. Rebman, Annukka A.R. Antar, Yukari C. Manabe, Laura Gutierrez‐Alamillo, Livia Casciola‐Rosen +3 more

Heterogeneity in practitioner-reported barriers to use, cost considerations and priorities for point of care sexually transmitted infection tests on surveys across seven years

International Journal of STD & AIDS(2023)10.1177/09564624231194375

N/A

0DataRank · unranked

1 citations

Yu‐Hsiang Hsieh, Yukari C. Manabe, Charlotte A. Gaydos, Anne Rompalo, Susan Tuddenham

Modeling in higher dimensions to improve diagnostic testing accuracy: Theory and examples for multiplex saliva-based SARS-CoV-2 antibody assays

PLoS ONE(2023)10.1371/journal.pone.0280823

N/A

0DataRank · unranked

4 citations

Anthony J. Kearsley, Nora Pisanic, Yukari C. Manabe, David L. Thomas, Christopher D. Heaney +2 more

Mycobacterium tuberculosis disease associates with higher HIV-1-specific antibody responses

iScience(2023)10.1016/j.isci.2023.106631

N/A

0DataRank · unranked

4 citations

Lydia Nakiyingi, Yvetane Moreau, Ethel Nankya, Alex Olson, Mo Zhang +7 more

A National, County-Level Evaluation of the Association Between COVID-19 and Sexually Transmitted Infections Within the United States in 2020

Sexually Transmitted Diseases(2023)10.1097/olq.0000000000001818

N/A

0DataRank · unranked

3 citations

Jordan Bradburne, Natalie K. Lee, Yukari C. Manabe, Lea E. Widdice, Charlotte A. Gaydos +5 more

Divergent Neuroimmune Signatures in the Cerebrospinal Fluid Predict Differential Gender-Specific Survival Among Patients With HIV-Associated Cryptococcal Meningitis

medRxiv(2023)10.1101/2023.08.09.23293903

N/A

0DataRank · unranked

1 citations

David R. Boulware, Elizabeth C Okafor, Joshua Rhein, Henry Kajumbula, Bernard S. Bagaya +7 more

Application of machine learning models to identify serological predictors of COVID-19 severity and outcomes

Research Square(2023)10.21203/rs.3.rs-3463155/v1

N/A

0DataRank · unranked

0 citations

Santosh Dhakal, Anna Yin, Marta Escarra‐Senmarti, Zoe O Demko, Nora Pisanic +23 more

Design, Creation, and Use of The Test Us Bank (TUB) COVID-19 Sample Biorepository

Research Square(2023)10.21203/rs.3.rs-3587006/v1

N/A

0DataRank · unranked

0 citations

Chad J. Achenbach, S. Behar, Laurel O’Connor, Seanan Tarrant, Julia Ferranto +46 more

Discordant performance of mpox serological assays

Journal of Virological Methods(2024)10.1016/j.jviromet.2024.115004

N/A

0DataRank · unranked

19 citations

Joyce Jones, Kelly A. Gebo, Bhakti Hansoti, Caroline C. Traut, Matthew M. Hamill +10 more

Relationship Between Acute SARS-CoV-2 Viral Clearance and Long COVID-19 (Long COVID) Symptoms: A Cohort Study

Clinical Infectious Diseases(2024)10.1093/cid/ciae539

N/A

0DataRank · unranked

12 citations

Annukka A.R. Antar, John Broach, Colton Wright, Pamela Stamegna, Katherine Daniela Luzuriaga Chávez +5 more

Higher prevalence of kidney function impairment among older people living with HIV in Uganda

BMC Nephrology(2024)10.1186/s12882-024-03761-1

N/A

0DataRank · unranked

8 citations

Robert Kalyesubula, Yukari C. Manabe, Phoebe Mbabazi, Susan Naikooba, Faizo Ssekindi +4 more

Antibiotic overuse, poor antimicrobial stewardship, and low specificity of syndromic case management in a cross section of men with urethral discharge syndrome in Kampala, Uganda

PLoS ONE(2024)10.1371/journal.pone.0290574

N/A

0DataRank · unranked

4 citations

Annet Onzia, Rosalind Parkes‐Ratanshi, Peter Kyambadde, Emmanuel Mande, Vivian Nakate +4 more

Improving Access to Care Through Youth-Focused Virtual Sexual Health Navigation

Journal of Adolescent Health(2024)10.1016/j.jadohealth.2024.02.027

N/A

0DataRank · unranked

3 citations

Errol L. Fields, Aubrey Alvarenga, Yeng Yang, Fiona Shorrock, Chris Reed +5 more

Autoantibodies directed against interferon alpha, nuclear antigens, cardiolipin, and beta 2 glycoprotein 1 are not induced by SARS-CoV-2 or associated with long COVID

International Journal of Infectious Diseases(2024)10.1016/j.ijid.2024.107289

N/A

0DataRank · unranked

5 citations

Joanne H. Hunt, Patrizio Caturegli, Patrick Winguth, Reinaldo E. Fernández, Gracie M Rozek +10 more

Self-collected penile-meatal swabs are suitable for the detection of STIs in Ugandan men with high rates of STI coinfections

Sexually Transmitted Infections(2024)10.1136/sextrans-2024-056330

N/A

0DataRank · unranked

4 citations

Adamaris Muñiz Tirado, Annet Onzia, Emmanuel Mande, Justin Hardick, Rosalind Parkes‐Ratanshi +3 more

Self-administered versus clinician-performed BinaxNOW COVID rapid test: a comparison of accuracy

Microbiology Spectrum(2024)10.1128/spectrum.02525-23

N/A

0DataRank · unranked

3 citations

Minahil Cheema, Sarah Omer, Ishaan Gupta, Kristie J. Sun, Asia Mitchell +18 more

Application of machine learning algorithms to identify serological predictors of COVID-19 severity and outcomes

Communications Medicine(2024)10.1038/s43856-024-00658-w

N/A

0DataRank · unranked

3 citations

Anna Yin, Marta Escarra‐Senmarti, Zoe O Demko, Nora Pisanic, Trevor S. Johnston +23 more

Retrospective Monkeypox Virus Surveillance Among Male Users of I Want the Kit in Maryland, United States

Clinical Infectious Diseases(2024)10.1093/cid/ciae208

N/A

0DataRank · unranked

2 citations

Justin Hardick, Katherine Uhteg, Nisha Ramdeep, Gretchen Armington, Heba H. Mostafa +2 more

Design, creation, and use of the Test Us Bank (TUB) COVID-19 sample biorepository

BMC Infectious Diseases(2024)10.1186/s12879-024-10154-0

N/A

0DataRank · unranked

1 citations

Chad J. Achenbach, S. Behar, Laurel O’Connor, Seanan Tarrant, Julia Ferranto +46 more

Relationship between acute SARS-CoV-2 viral clearance with Long COVID Symptoms: a cohort study

medRxiv(2024)10.1101/2024.07.04.24309953

N/A

0DataRank · unranked

6 citations

Annukka A.R. Antar, John Broach, Colton Wright, Pamela Stamegna, Katherine Daniela Luzuriaga Chávez +5 more

Higher prevalence of kidney function impairment among older people living with HIV in Uganda

Research Square(2024)10.21203/rs.3.rs-4364155/v1

N/A

0DataRank · unranked

1 citations

Robert Kalyesubula, Yukari C. Manabe, Phoebe Mbabazi, Susan Naikooba, Faizo Ssekindi +4 more

Comparison of the prevalence and associated factors of chronic kidney disease diagnosed by serum creatinine or cystatin C among young people living with HIV in Uganda

medRxiv(2024)10.1101/2024.09.02.24312932

N/A

0DataRank · unranked

1 citations

Laurie A. Tomlinson, Robert Kalyesubula, Chido Dziva Chikwari, Barbara Castelnuovo, Yukari C. Manabe +3 more

Disseminated Saccharomyces cerevisiae infection in advanced HIV: a literature review

Clinical Microbiology and Infection(2025)10.1016/j.cmi.2025.02.009

N/A

0DataRank · unranked

5 citations

Amita Gupta, Matthew M. Hamill, Sean X. Zhang, Yukari C. Manabe, Lucy X. Li

Virological and drug-resistance outcomes for people living with HIV initiating or switching to tenofovir, lamivudine, and dolutegravir in six PEPFAR-supported countries: a prospective cohort study

The Lancet HIV(2025)10.1016/s2352-3018(25)00162-6

N/A

0DataRank · unranked

3 citations

Caitlyn McCarthy, Carole L. Wallis, Cissy Kityo, Michael D. Hughes, Catherine Godfrey +44 more

Virology Outcomes of Tenofovir-lamivudine-dolutegravir in Treatment-naïve and Virologically Suppressed Individuals Switching From an NNRTI-based Regimen: An Observational Analysis at 13 Sites

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf270

N/A

0DataRank · unranked

1 citations

Caitlyn McCarthy, Serena P. Koenig, Michael D Hughes, Carole L. Wallis, Isaac Tsikhutsu +41 more

Real-world Use of Molecular Point-of-care Testing for Sexually Transmitted Infections (STIs) in the Emergency Department: Why It Matters for Acute Care Management

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf749

N/A

0DataRank · unranked

1 citations

Kendall Maliszewski, Mustapha Saheed, Edana Mann, Nyah Johnson, Spencer J Mann +8 more

Post-treatment time to symptom resolution and associated factors in a cohort of Ugandan men with urethral discharge syndrome

BMC Infectious Diseases(2025)10.1186/s12879-025-11196-8

N/A

0DataRank · unranked

0 citations

Yisi Liu, Junyi Zhou, Ethan Gough, Annet Onzia, Rosalind Parkes‐Ratanshi +5 more

Associations with Prevalent Sexually Transmitted Infection Prevalence among Young Women Domestic Workers in Central Uganda

medRxiv(2025)10.1101/2025.08.21.25334130

N/A

0DataRank · unranked

0 citations

Andrew Mujugira, Vivian Nakate, Joseph Musaazi, Justine Bukenya, Eric Sseggujja +7 more

Syphilis clustering among young pregnant women in Kampala, Uganda

medRxiv(2025)10.1101/2025.08.21.25334202

N/A

0DataRank · unranked

0 citations

Timothy R. Muwonge, Andrew Mujugira, Barbara Castelnuvo, Edith Nakku-Joloba, Rosalind Parkes‐Ratanshi +3 more

Impact of Tuberculosis Preventive Treatment on Adverse Pregnancy Outcomes in women living with HIV in Uganda: A Quasi-experimental study using routine care data

Research Square(2025)10.21203/rs.3.rs-7170241/v1

N/A

0DataRank · unranked

0 citations

Christine Sekaggya‐Wiltshire, Stella Zawedde‐Muyanja, Proscovia Namuwenge, M. Sanni Ali, Yukari C. Manabe +3 more

Telemedicine Use Among People With HIV in 2021: The Hybrid-Care Environment

JAIDS Journal of Acquired Immune Deficiency Syndromes(2023)10.1097/qai.0000000000003124

N/A

0DataRank · unranked

8 citations

Geetanjali Chander, Joyce Jones, Anthony T. Fojo, Jeanne Keruly, Yukari C. Manabe +4 more

Reduction in Baseline CD4 Count Testing Following Human Immunodeficiency Virus “Treat All” Adoption in Uganda

Clinical Infectious Diseases(2020)10.1093/cid/ciaa261

N/A

0DataRank · unranked

17 citations

Mark W. Tenforde, Alex Muganzi, Joseph N Jarvis, Yukari C. Manabe, Joanita Kigozi +1 more

Self-Collected Oral Fluid Saliva Is Insensitive Compared With Nasal-Oropharyngeal Swabs in the Detection of Severe Acute Respiratory Syndrome Coronavirus 2 in Outpatients

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa648

N/A

0DataRank · unranked

28 citations

Carolyn Reuland, Tong Yu, Răzvan Azamfirei, Justin Hardick, Taylor R. Church +38 more

Antimicrobial Resistance of Neisseria Gonorrhoeae in a Newly Implemented Surveillance Program in Uganda: Surveillance Report

JMIR Public Health and Surveillance(2020)10.2196/17009

N/A

0DataRank · unranked

27 citations

Matthew M. Hamill, Francis Kakooza, Emmanuel Mande, Jessica Wagner, Olive Mbabazi +9 more

Severe Acute Respiratory Syndrome Coronavirus 2 Antibody Status in Decedents Undergoing Forensic Postmortem Examination in Maryland, May 24 to June 30, 2020

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa611

N/A

0DataRank · unranked

1 citations

Oliver Laeyendecker, Rong Li, Sally B. Coburn, Ethan Klock, Owen R. Baker +10 more

Dysregulated immunity in SARS-CoV-2 infected pregnant women

medRxiv(2020)10.1101/2020.11.13.20231373

N/A

0DataRank · unranked

29 citations

Jun Lei, Patrick S. Creisher, Minyoung Jang, Ramya Reddy, Kristin Voegtline +18 more

Durable SARS-CoV-2 B cell immunity after mild or severe disease

medRxiv(2020)10.1101/2020.10.28.20220996

N/A

0DataRank · unranked

21 citations

Nicole Skinner, Paul W. Blair, Han-Sol Park, Kirsten Littlefield, Abhinaya Ganesan +10 more

Variability of Salivary and Nasal Specimens for SARS-CoV-2 Detection

medRxiv(2020)10.1101/2020.10.07.20208520

N/A

0DataRank · unranked

6 citations

Carolyn Reuland, Tong Yu, Răzvan Azamfirei, Taylor R. Church, Diane Brown +7 more

Chest X-ray interpretation does not complement Xpert MTB/RIF in diagnosis of smear-negative pulmonary tuberculosis among TB-HIV co-infected adults in a resource-limited setting

Research Square(2020)10.21203/rs.3.rs-85376/v1

N/A

0DataRank · unranked

3 citations

John Mark Bwanika, Willy Ssengooba, Frank Mubiru, Damalie Nakanjako, Moses Joloba +3 more

Functional Adrenal Insufficiency among Tuberculosis-Human Immunodeficiency Virus co-infected patients: A Cross-section study in Uganda

Research Square(2020)10.21203/rs.2.16756/v3

N/A

0DataRank · unranked

0 citations

Andrew Mujugira, David B. Meya, Irene Andia Biraro, Ezekiel Mupere, William Worodria +2 more

Antigen-Based Testing but Not Real-Time Polymerase Chain Reaction Correlates With Severe Acute Respiratory Syndrome Coronavirus 2 Viral Culture

Clinical Infectious Diseases(2021)10.1093/cid/ciaa1706

N/A

0DataRank · unranked

294 citations

Valentin Parvu, Maggie Li, Jeffrey C Andrews, Yukari C. Manabe, Salma Kodsi +5 more

Longitudinal Assessment of Diagnostic Test Performance Over the Course of Acute SARS-CoV-2 Infection

The Journal of Infectious Diseases(2021)10.1093/infdis/jiab337

N/A

0DataRank · unranked

163 citations

Laura Gibson, Pamela P. Martinez, Ruian Ke, Agha Zeeshan Mirza, Madison Conte +29 more

Durable SARS-CoV-2 B cell immunity after mild or severe disease

Journal of Clinical Investigation(2021)10.1172/jci145516

N/A

0DataRank · unranked

98 citations

Nicole Skinner, Paul W. Blair, Han-Sol Park, Kirsten Littlefield, Abhinaya Ganesan +11 more

Factors that Influence the Reported Sensitivity of Rapid Antigen Testing for SARS-CoV-2

Frontiers in Microbiology(2021)10.3389/fmicb.2021.714242

N/A

0DataRank · unranked

78 citations

Devin S. Gary, J. John Mann, Yu‐Chih Lin, Dorsey Mills, Lauren Cooper +5 more

The Clinical Course of COVID-19 in the Outpatient Setting: A Prospective Cohort Study

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab007

N/A

0DataRank · unranked

74 citations

Diane Brown, Minyoung Jang, Annukka A.R. Antar, Jeanne Keruly, Vismaya S. Bachu +42 more

Point-of-care testing for HIV and sexually transmitted infections reveals risky behavior among men at gambling centers in Uganda”

International Journal of STD & AIDS(2021)10.1177/09564624211000973

N/A

0DataRank · unranked

2 citations

John Mark Bwanika, Joshua Kyenkya, Grace Banturaki, Joanita Kigozi, Davis Musinguzi +5 more

Longitudinal analysis of SARS-CoV-2 vaccine breakthrough infections reveal limited infectious virus shedding and restricted tissue distribution

medRxiv(2021)10.1101/2021.08.30.21262701

N/A

0DataRank · unranked

38 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Chad J. Achenbach, Sally M. McFall +38 more

Longitudinal assessment of diagnostic test performance over the course of acute SARS-CoV-2 infection

medRxiv(2021)10.1101/2021.03.19.21253964

N/A

0DataRank · unranked

29 citations

Laura Gibson, Pamela P. Martinez, Ruian Ke, Agha Zeeshan Mirza, Madison Conte +29 more

Dimeric IgA is a specific biomarker of recent SARS-CoV-2 infection

medRxiv(2021)10.1101/2021.06.28.21259671

N/A

0DataRank · unranked

11 citations

Huy Trần Văn, Ethan Klock, Shuning Zheng, Zihui Wei, Irene Boo +12 more

Durability of SARS-CoV-2-specific IgG responses in saliva for up to 8 months after infection

medRxiv(2021)10.1101/2021.03.12.21252149

N/A

0DataRank · unranked

10 citations

Nora Pisanic, Kate Kruczynski, Tyrone Howard, Magdielis Gregory Rivera, Kristoffer Spicer +20 more

Future potential of Rapid Acceleration of Diagnostics (RADx Tech) in molecular diagnostics

Expert Review of Molecular Diagnostics(2021)10.1080/14737159.2021.1898950

N/A

0DataRank · unranked

7 citations

Denise Dunlap, Wilbur A. Lam, Yukari C. Manabe, Greg S. Martin, Sally M. McFall +1 more

Differentiation of SARS-CoV-2 naturally infected and vaccinated individuals in an inner-city emergency department

medRxiv(2021)10.1101/2021.10.13.21264968

N/A

0DataRank · unranked

7 citations

Yu‐Hsiang Hsieh, Reinaldo E. Fernández, Gaby Dashler, Emily Egbert, Shawn A. Truelove +15 more

Delayed rise of oral fluid antibodies, elevated BMI, and absence of early fever correlate with longer time to SARS-CoV-2 RNA clearance in an longitudinally sampled cohort of COVID-19 outpatients

medRxiv(2021)10.1101/2021.03.02.21252420

N/A

0DataRank · unranked

3 citations

Tong Yu, Nora Pisanic, Răzvan Azamfirei, Jeffrey A. Tornheim, Diane Brown +39 more

Time Between Viral Loads for People with HIV during the COVID-19 Pandemic

medRxiv(2021)10.1101/2021.12.19.21268052

N/A

0DataRank · unranked

3 citations

Nicola M. Shen, Jeanne Keruly, Joyce Jones, Anthony T. Fojo, Yukari C. Manabe +5 more

Preclinical and clinical validation of a novel injected molded swab for molecular assay detection of SARS-CoV-2 virus

medRxiv(2021)10.1101/2021.10.19.21265200

N/A

0DataRank · unranked

1 citations

Devon R. Hartigan, Justin Hardick, Rebecca Gore, Miryam Adelfio, Anyelo R. Diaz +5 more

Daily longitudinal sampling of SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness

Nature Microbiology(2022)10.1038/s41564-022-01105-z

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0DataRank · unranked

222 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Agha Zeeshan Mirza, Madison Conte +34 more

Longitudinal Analysis of SARS-CoV-2 Vaccine Breakthrough Infections Reveals Limited Infectious Virus Shedding and Restricted Tissue Distribution

Open Forum Infectious Diseases(2022)10.1093/ofid/ofac192

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0DataRank · unranked

65 citations

Pamela P. Martinez, Rebecca L. Smith, Laura Gibson, Chad J. Achenbach, Sally M. McFall +38 more

The HIV and sexually transmitted infection syndemic following mass scale-up of combination HIV interventions in two communities in southern Uganda: a population-based cross-sectional study

The Lancet Global Health(2022)10.1016/s2214-109x(22)00424-7

N/A

0DataRank · unranked

32 citations

Josephine Mpagazi, Stephen Kiboneka, Robert Ssekubugu, John Baptiste Kereba, Annet Nakayijja +66 more

Mitigation of SARS-CoV-2 transmission at a large public university

Nature Communications(2022)10.1038/s41467-022-30833-3

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0DataRank · unranked

35 citations

Robin L. Holland, Fadi G. Alnaji, Kelsie J. Green, Leyi Wang, Richard Fredrickson +95 more

Evaluation of Four Point of Care (POC) Antigen Assays for the Detection of the SARS-CoV-2 Variant Omicron

Microbiology Spectrum(2022)10.1128/spectrum.01025-22

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0DataRank · unranked

16 citations

Nicholas Gallagher, Jaiprasath Sachithanandham, Amary Fall, Zishan K. Siddiqui, Andrew Pekosz +3 more

Aetiology of hospitalized fever and risk of death at Arua and Mubende tertiary care hospitals in Uganda from August 2019 to August 2020

BMC Infectious Diseases(2022)10.1186/s12879-022-07877-3

N/A

0DataRank · unranked

15 citations

Kenneth Kobba, Francis Kakooza, Matthew L. Robinson, Emmanuel Candia, Jonathan Mayito +7 more

Retrospective Analysis of Ugandan Men with Urethritis Reveals Mycoplasma genitalium and Associated Macrolide Resistance

Microbiology Spectrum(2022)10.1128/spectrum.02304-21

N/A

0DataRank · unranked

13 citations

Justin Hardick, Annet Onzia, Tong Yu, Peter Kyambadde, Rosalind Parkes‐Ratanshi +5 more

Implementation of the Comprehensive Unit-Based Safety Program to Improve Infection Prevention and Control Practices in Four Neonatal Intensive Care Units in Pune, India

Frontiers in Pediatrics(2022)10.3389/fped.2021.794637

N/A

0DataRank · unranked

12 citations

Asad Latif, Bharat Randive, Abhay Kadam, Uday Rajput, Aarti Kinikar +17 more

High Sensitivity and NPV for BinaxNOW Rapid Antigen Test in Children at a Mass Testing Site during Prevalent Delta Variant Period

Microbiology Spectrum(2022)10.1128/spectrum.00236-22

N/A

0DataRank · unranked

8 citations

Mary Jane E. Vaeth, Matthew L. Robinson, Maryam Elhabashy, Ishaan Gupta, Sophia Purekal +18 more

Improving the specificity of nucleic acid detection with endonuclease-actuated degradation

Communications Biology(2022)10.1038/s42003-022-03242-x

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0DataRank · unranked

7 citations

Momčilo Gavrilov, Yang Liu, Dominique Rasoloson, Madison Conte, Justin Hardick +7 more

Characterizing SARS-CoV-2 Transcription of Subgenomic and Genomic RNAs During Early Human Infection Using Multiplexed Droplet Digital Polymerase Chain Reaction

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac472

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0DataRank · unranked

5 citations

Che‐Min Lo, Michael Murphy, Tanner Grudda, Nicholas Gallagher, Chun Huai Luo +13 more

Comparison of Rapid Antigen Tests’ Performance between Delta (B.1.61.7; AY.X) and Omicron (B.1.1.529; BA1) Variants of SARS-CoV-2: Secondary Analysis from a Serial Home Self-Testing Study

medRxiv(2022)10.1101/2022.02.27.22271090

N/A

0DataRank · unranked

21 citations

Carly Herbert, Andreas Filippaios, John Broach, Andrés Colubri, Nisha Fahey +29 more

Limitations of molecular and antigen test performance for SARS-CoV-2 in symptomatic and asymptomatic COVID-19 contacts

medRxiv(2022)10.1101/2022.02.05.22270481

N/A

0DataRank · unranked

8 citations

Agha Zeeshan Mirza, Nicholas Gallagher, Alec Boudreau, Lydia Garcia, Tong Yu +12 more

Increased uptake of tuberculosis preventive therapy (TPT) among people living with HIV following the 100-days accelerated campaign: A retrospective review of routinely collected data at six urban public health facilities in Uganda

medRxiv(2022)10.1101/2022.05.12.22274996

N/A

0DataRank · unranked

3 citations

Christine Sekaggya‐Wiltshire, Stephen Okoboi, Stella Zawedde‐Muyanja, Mbazi Senkoro, Nelson Kalema +6 more

Characterizing SARS-CoV-2 transcription of subgenomic and genomic RNAs during early human infection using multiplexed ddPCR

medRxiv(2022)10.1101/2022.02.18.22271199

N/A

0DataRank · unranked

0 citations

Che‐Min Lo, Michael Murphy, Tanner Grudda, Nicholas Gallagher, Chun Huai Luo +12 more

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