Nikola S. Mueller

Also affiliated with Helmholtz Zentrum München

Biochemistry, Genetics and Molecular BiologyNeuroscienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile

3.1Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

miTALOS v2: Analyzing Tissue Specific microRNA Function

PLOS ONE(2016)10.1371/journal.pone.0151771

Top 7%

3.1DataRank

Top 7%77 citations

Fabian Joachim Theis, Nikola S. Mueller, Martin Preusse

Papers

Driven by 56 papers — median percentile 0. Top paper: “GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotency”.

GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotency

Proceedings of the National Academy of Sciences(2017)10.1073/pnas.1708341114

N/A

5.4DataRank · unranked

178 citations

Dmitry Shaposhnikov, Valentyna Rishko, Chaido Ori, Christoph Ziegenhain, Steffen Sass +10 more

Single cell RNA-seq denoising using a deep count autoencoder

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/300681

N/A

3.3DataRank · unranked

86 citations

Lukas M. Simon, Maria Mircea, Nikola S. Mueller, Fabian Joachim Theis, Gökçen Eraslan

miTALOS v2: Analyzing Tissue Specific microRNA Function

PLOS ONE(2016)10.1371/journal.pone.0151771

Top 7%

3.1DataRank

Top 7%77 citations

Fabian Joachim Theis, Nikola S. Mueller, Martin Preusse

Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns

Nature Communications(2019)10.1038/s41467-019-10461-0

N/A

2.8DataRank · unranked

151 citations

Gökçen Eraslan, Christian M. Page, Jari Lahti, Marius Lahti-Pulkkinen, Esa Hämäläinen +233 more

A novel molecular disease classifier for psoriasis and eczema

Experimental Dermatology(2016)10.1111/exd.13077

N/A

2.7DataRank · unranked

76 citations

Linda Krause, Felix Lauffer, Anne Atenhan, Jenny Thomas, Sebastian P. Stark +11 more

Toll-like receptor 7/8 agonists stimulate plasmacytoid dendritic cells to initiate TH17-deviated acute contact dermatitis in human subjects

Journal of Allergy and Clinical Immunology(2018)10.1016/j.jaci.2017.07.045

N/A

2.4DataRank · unranked

57 citations

Felix Lauffer, Linda Krause, Jenny Thomas, Anne Atenhan, Regina Franz +16 more

DeepWAS: Multivariate genotype-phenotype associations by directly integrating regulatory information using deep learning

PLOS Computational Biology(2020)10.1371/journal.pcbi.1007616

N/A

2.3DataRank · unranked

88 citations

Till F. M. Andlauer, Jade Martins, Stella Iurato, Brigitte Kühnel, Melanie Waldenberger +26 more

IL‐17C amplifies epithelial inflammation in human psoriasis and atopic eczema

Journal of the European Academy of Dermatology and Venereology(2020)10.1111/jdv.16126

N/A

2.1DataRank · unranked

51 citations

V. Baghin, W. Kempf, M. Absmaier‐Kijak, M. Morelli, S. Madonna +20 more

Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

Molecular Cancer Research(2018)10.1158/1541-7786.mcr-17-0334

N/A

2.1DataRank · unranked

42 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

Predicting gene expression in massively parallel reporter assays: A comparative study

Human Mutation(2017)10.1002/humu.23197

N/A

1.7DataRank · unranked

52 citations

Haoyang Zeng, Matthew D. Edwards, Gamze Gürsoy, Kevin Tian, R. Alan Harris +20 more

The global gene expression profile of the secondary transition during pancreatic development

Mechanisms of Development(2016)10.1016/j.mod.2015.11.004

N/A

1.5DataRank · unranked

37 citations

Nikola S. Mueller, Silvia Engert, Michael Sterr, Ingo Burtscher, Aurelia Raducanu +6 more

A modular framework for gene set analysis integrating multilevel omics data

Nucleic Acids Research(2013)10.1093/nar/gkt752

N/A

1.4DataRank · unranked

31 citations

Florian Buettner, Nikola S. Mueller, Fabian Joachim Theis, Steffen Sass

BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Genome Biology(2019)10.1186/s13059-019-1748-6

N/A

1.3DataRank · unranked

28 citations

Florian Opperer, Can Sönmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl +5 more

Associations of psychiatric disease and ageing with FKBP5 expression converge on superficial layer neurons of the neocortex

Acta Neuropathologica(2023)10.1007/s00401-023-02541-9

N/A

1.3DataRank · unranked

55 citations

Janine Knauer-Arloth, Darina Czamara, Katrina Z. Edmond, Malosree Maitra, Anna S. Fröhlich +31 more

A computational model to predict severity of atopic eczema from 30 serum proteins

Journal of Allergy and Clinical Immunology(2016)10.1016/j.jaci.2016.04.018

N/A

1.1DataRank · unranked

15 citations

Vagkan Mourantchanian, Knut Brockow, Fabian Joachim Theis, Bettina Knapp, Nikola S. Mueller +4 more

Integrative Analysis of MicroRNA and mRNA Data Reveals an Orchestrated Function of MicroRNAs in Skeletal Myocyte Differentiation in Response to TNF-α or IGF1

PLOS ONE(2015)10.1371/journal.pone.0135284

N/A

1.1DataRank · unranked

24 citations

Steffen Sass, Nikola S. Mueller, Stefan Krebs, Stefan Bauersachs, Sebastian Kaiser +6 more

Single-cell RNA-seq denoising using a deep count autoencoder

Nature Communications(2019)10.1038/s41467-018-07931-2

N/A

1.1DataRank · unranked

1140 citations

Lukas M. Simon, Maria Mircea, Nikola S. Mueller, Fabian Joachim Theis, Gökçen Eraslan

Model Based Targeting of IL-6-Induced Inflammatory Responses in Cultured Primary Hepatocytes to Improve Application of the JAK Inhibitor Ruxolitinib

Frontiers in Physiology(2017)10.3389/fphys.2017.00775

N/A

0.954DataRank · unranked

31 citations

Andreas Raue, Xiaoyun Huang, Joep Vanlier, Anja Jünger, Sebastian Bohl +26 more

Robust Second-Order Source Separation Identifies Experimental Responses in Biomedical Imaging

Lecture Notes in Computer Science(2010)10.1007/978-3-642-15995-4_58

N/A

0.881DataRank · unranked

10 citations

Nikola S. Mueller, Claudia Plant, Christian Böhm, Fabian Joachim Theis

Tolerance of repeated toxic injuries of murine livers is associated with steatosis and inflammation

Cell Death & Disease(2023)10.1038/s41419-023-05855-4

N/A

0.741DataRank · unranked

25 citations

Christoph Ogris, Amnah Othman, Pia Erdoesi, Wolfgang Schmidt-Heck, Ina Biermayer +18 more

netReg: network-regularized linear models for biological association studies

Bioinformatics(2017)10.1093/bioinformatics/btx677

N/A

0.724DataRank · unranked

26 citations

Christiane Fuchs, Nikola S. Mueller, Fabian Joachim Theis, Simon Dirmeier

AURKA, DLGAP5, TPX2, KIF11 and CKAP5: Five specific mitosis-associated genes correlate with poor prognosis for non-small cell lung cancer patients

International Journal of Oncology(2017)10.3892/ijo.2017.3834

N/A

0.704DataRank · unranked

108 citations

Petros Christopoulos, Thomas Muley, Arne Warth, Ursula Klingmueller, Michael Thomas +7 more

RAMONA: a Web application for gene set analysis on multilevel omics data

Bioinformatics(2014)10.1093/bioinformatics/btu610

N/A

0.668DataRank · unranked

8 citations

Florian Buettner, Nikola S. Mueller, Fabian Joachim Theis, Steffen Sass

Dynamic landscape of pancreatic carcinogenesis reveals early molecular networks of malignancy

Gut(2016)10.1136/gutjnl-2015-310913

N/A

0.617DataRank · unranked

60 citations

Philipp Bruns, Nora A Behler, Ligong Chang, Anna Melissa Schlitter, Jing Cao +21 more

The neglected twin: Nummular eczema is a variant of atopic dermatitis with codominant TH2/TH17 immune response

Journal of Allergy and Clinical Immunology(2023)10.1016/j.jaci.2023.04.009

N/A

0.553DataRank · unranked

39 citations

Manja Jargosch, Nikola S. Mueller, Natalie Garzorz-Stark, Caroline Pilz, Felix Lauffer +9 more

Copy number aberrations from Affymetrix SNP 6.0 genotyping data—how accurate are commonly used prediction approaches?

Briefings in Bioinformatics(2018)10.1093/bib/bby096

N/A

0.427DataRank · unranked

5 citations

Ivan Kondofersky, Steffen Sass, Fabian Joachim Theis, Nikola S. Mueller, Kristian Unger +1 more

MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma

International Journal of Molecular Sciences(2015)10.3390/ijms161226230

N/A

0.406DataRank · unranked

14 citations

Adriana Pitea, Kristian Unger, Julia Hess, Julia Heß, Nikola S. Mueller +2 more

longmixr: a tool for robust clustering of high-dimensional cross-sectional and longitudinal variables of mixed data types

Bioinformatics(2024)10.1093/bioinformatics/btae137

N/A

0.292DataRank · unranked

6 citations

Monika Budde, Teodora Pandeva, Ivan Kondofersky, Sabrina K. Schaupp, Fabian Joachim Theis +6 more

Variant-risk-exon interplay impacts circadian rhythm and dopamine signaling pathway in severe psychiatric disorders

medRxiv(2022)10.1101/2022.08.09.22278128

N/A

0.249DataRank · unranked

4 citations

Natalie Matosin, Nathalie Gerstner, Anna S. Fröhlich, Anna C. Koller, Franziska Degenhardt +9 more

Gaussian graphical modeling reveals specific lipid correlations in glioblastoma cells

SPIE Proceedings(2011)10.1117/12.884196

N/A

0.165DataRank · unranked

2 citations

Jan Krumsiek, Fabian Joachim Theis, Christian Böhm, Anke Meyer‐Baese, Nikola S. Mueller

Variably methylated regions in the newborn epigenome: environmental, genetic and combined influences

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/436113

N/A

0.165DataRank · unranked

2 citations

Gökçen Eraslan, Jari Lahti, Christian M. Page, Marius Lahti-Pulkkinen, Esa Hämäläinen +30 more

Exon-variant interplay and multi-modal evidence identify endocrine dysregulation in severe psychiatric disorders impacting excitatory neurons

Translational Psychiatry(2025)10.1038/s41398-025-03366-8

N/A

0.104DataRank · unranked

1 citations

Natalie Matosin, Nathalie Gerstner, Anna S. Fröhlich, Anna C. Koller, Franziska Degenhardt +9 more

Additional file 4: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Figshare(2019)10.6084/m9.figshare.9277595

Top 100%

0DataRank

Top 100%0 citations

Florian Opperer, Can Sรถnmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl +5 more

Repeated toxic injuries of murine liver are tolerated through minute steatosis and mild inflammation

Zeitschrift für Gastroenterologie(2023)10.1055/s-0042-1759925

N/A

0DataRank · unranked

0 citations

Christoph Ogris, Amnah Othman, Pia Erdoesi, Wolfgang Schmidt-Heck, Ina Biermayer +12 more

Data from Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

(2023)10.1158/1541-7786.c.6541735

N/A

0DataRank · unranked

0 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

Additional file 5: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Figshare(2019)10.6084/m9.figshare.9277604

Top 100%

0DataRank

Top 100%0 citations

Florian Opperer, Can Sรถnmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl +5 more

The Role Of Micrornas In The Course Of Severe Mental Disorders

European Neuropsychopharmacology(2017)10.1016/j.euroneuro.2016.09.527

N/A

0DataRank · unranked

0 citations

Gaurav Jain, Lalit Kaurani, Ivan Kondofersky, Monika Budde, Katrin Gade +12 more

Polygenic Burden Analysis of Longitudinal Clusters of Psychopathological Features In A Cross-Diagnostic Group of Individuals with Severe Mental Illness

European Neuropsychopharmacology(2017)10.1016/j.euroneuro.2016.09.441

N/A

0DataRank · unranked

0 citations

Ivan Kondofersky, Monika Budde, Kristina Adorjan, Fanny Aldinger, Heike Anderson-Schmidt +15 more

Additional file 1: of BART-Seq: cost-effective massively parallelized targeted sequencing for genomics, transcriptomics, and single-cell analysis

Figshare(2019)10.6084/m9.figshare.9277580

Top 100%

0DataRank

Top 100%0 citations

Florian Opperer, Can Sรถnmezer, Dmitry Shaposhnikov, Steffen Sass, Christian Krendl +5 more

F96POLYGENIC RISK SCORE ANALYSIS OF TRAJECTORIES OF COGNITIVE PERFORMANCE IN PSYCHIATRIC PATIENTS

European Neuropsychopharmacology(2019)10.1016/j.euroneuro.2018.08.176

N/A

0DataRank · unranked

0 citations

Monika Budde, Ivan Kondofersky, Sergi Papiol, Urs Heilbronner, Katrin Gade +15 more

Suppl. Figure Legends from Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

(2023)10.1158/1541-7786.22517497

N/A

0DataRank · unranked

0 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

Integrating Polygenic Allele Burden Information And Phenomic Data To Characterize Complex Disease Trajectories In Severe Mental Illness

European Neuropsychopharmacology(2017)10.1016/j.euroneuro.2016.09.447

N/A

0DataRank · unranked

0 citations

Ivan Kondofersky, Kristina Adorjan, Fanny Aldinger, Heike Anderson-Schmidt, Till F.M. Andlauer +13 more

Supplementary Data - Materials and Methods from Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

INDIGO (University of Illinois at Chicago)(2023)10.1158/1541-7786.22517494.v1

N/A

0DataRank · unranked

0 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

Supplementary Figures S1-S8 from Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

(2023)10.1158/1541-7786.22517488

N/A

0DataRank · unranked

0 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

WHAT SHAPES THE CHILD'S EPIGENOME: GENOTYPE, PRENATAL ENVIRONMENT OR BOTH?

European Neuropsychopharmacology(2019)10.1016/j.euroneuro.2017.08.363

N/A

0DataRank · unranked

0 citations

Goekcen Eraslan, Anna Suarez, Polina Girchenko, Jari Lahti, Esa Hämäläinen +9 more

Supplementary Figures S1-S8 from Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

INDIGO (University of Illinois at Chicago)(2023)10.1158/1541-7786.22517488.v1

N/A

0DataRank · unranked

0 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

Data from Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

(2023)10.1158/1541-7786.c.6541735.v1

N/A

0DataRank · unranked

0 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

Bioinformatics in Psychiatric Genetics

Psychiatric Genetics(2018)10.1093/med/9780190221973.003.0009

N/A

0DataRank · unranked

0 citations

Ivan Kondofersky, Karolina Worf, Fabian Joachim Theis, Gökçen Eraslan, Nikola S. Mueller

SA125POLYGENIC BURDEN ANALYSIS OF LONGITUDINAL CLUSTERS OF PSYCHOPATHOLOGICAL FEATURES IN A CROSS-DIAGNOSTIC GROUP OF INDIVIDUALS WITH SEVERE MENTAL ILLNESS

European Neuropsychopharmacology(2019)10.1016/j.euroneuro.2018.08.347

N/A

0DataRank · unranked

0 citations

Ivan Kondofersky, Monika Budde, Kristina Adorjan, Fanny Aldinger, Heike Anderson-Schmidt +12 more

POLYGENIC BURDEN ANALYSIS OF LONGITUDINAL CLUSTERS OF QUALITY OF LIFE AND FUNCTIONING IN PATIENTS WITH SEVERE MENTAL ILLNESS

European Neuropsychopharmacology(2017)10.1016/j.euroneuro.2016.09.450

N/A

0DataRank · unranked

0 citations

Fanny Aldinger, Ivan Kondofersky, Kristina Adorjan, Heike Anderson-Schmidt, Till F.M. Andlauer +16 more

POLYGENIC BURDEN ANALYSIS OF LONGITUDINAL CLUSTERS OF PSYCHOPATHOLOGICAL FEATURES IN A CROSS-DIAGNOSTIC GROUP OF INDIVIDUALS WITH SEVERE MENTAL ILLNESS

European Neuropsychopharmacology(2019)10.1016/j.euroneuro.2017.08.382

N/A

0DataRank · unranked

0 citations

Ivan Kondofersky, Monika Budde, Kristina Adorjan, Fanny Aldinger, Heike Anderson-Schmidt +14 more

Supplementary Data - Materials and Methods from Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

(2023)10.1158/1541-7786.22517494

N/A

0DataRank · unranked

0 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

Repeated toxic injuries of murine liver are tolerated through microsteatosis and mild inflammation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.12.476054

N/A

0DataRank · unranked

0 citations

Christoph Ogris, Amnah Othman, Pia Erdoesi, Wolfgang Schmidt-Heck, Ina Biermayer +12 more

Supplementary Data - Tables from Epigenetically Regulated Chromosome 14q32 miRNA Cluster Induces Metastasis and Predicts Poor Prognosis in Lung Adenocarcinoma Patients

(2023)10.1158/1541-7786.22517491

N/A

0DataRank · unranked

0 citations

Manuel Rodríguez-Paredes, Marco Albrecht, Carsten Sticht, Damian Stichel, Julian Gutekunst +20 more

Network Embedding Across Multiple Tissues and Data Modalities Elucidates the Context of Host Factors Important for COVID-19 Infection

Frontiers in Genetics(2022)10.3389/fgene.2022.909714

N/A

0DataRank · unranked

6 citations

Ghalia Rehawi, Lambert Moyon, Nathalie Gerstner, Christoph Ogris, Janine Knauer-Arloth +4 more

Information Theoretic Concepts to Unravel Cell–Cell Communication

Lecture Notes in Bioengineering(2017)10.1007/978-3-319-54729-9_4

N/A

0DataRank · unranked

0 citations

Steffen Sass, Barbara Offermann, Amit Singh, Steffen Knauer, Andreas Schüttler +7 more

Nikola S. Mueller

Indexed papers

Top data-sharing exemplar

Papers