Genevieve L. Stein-O’Brien

Also affiliated with Johns Hopkins Medicine, Sidney Kimmel Comprehensive Cancer Center

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.269Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A Curated Compendium of Transcriptomic Data for the Exploration of Neocortical Development

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.26.581612

Top 58%

0.269DataRank

Top 58%5 citations

Ricky S. Adkins, Joshua Orvis, Guangyan Li, Xoel Mato-Blanco, Alex M. Casella +15 more

Papers

Driven by 37 papers — median percentile 42. Top paper: “Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories”.

Human interpretable grammar encodes multicellular systems biology models to democratize virtual cell laboratories

Cell(2025)10.1016/j.cell.2025.06.048

N/A

0.945DataRank · unranked

45 citations

Daniel Bergman, Heber L. Rocha, David Zhou, Eric Cramer, Ian C. McLean +42 more

Transfer Learning Reveals Cancer-Associated Fibroblasts Are Associated with Epithelial–Mesenchymal Transition and Inflammation in Cancer Cells in Pancreatic Ductal Adenocarcinoma

Cancer Research(2024)10.1158/0008-5472.can-23-1660

N/A

0.867DataRank · unranked

44 citations

Benedict Kinny‐Köster, Joseph A. Tandurella, Jacob T. Mitchell, Dimitrios N. Sidiropoulos, Melanie Loth +29 more

Enter the Matrix: Factorization Uncovers Knowledge from Omics

Trends in Genetics(2018)10.1016/j.tig.2018.07.003

N/A

0.837DataRank · unranked

264 citations

Raman Arora, Alexander V. Favorov, Lana X. Garmire, Casey S. Greene, Loyal A. Goff +7 more

Universal prediction of cell-cycle position using transfer learning

Genome biology(2022)10.1186/s13059-021-02581-y

N/A

0.735DataRank · unranked

133 citations

Genevieve L. Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana L. Winer +5 more

Parallel Social Information Processing Circuits Are Differentially Impacted in Autism

Neuron(2020)10.1016/j.neuron.2020.10.002

N/A

0.663DataRank · unranked

82 citations

Genevieve L. Stein-O’Brien, Alejandra V. Patino, Romain Nardou, Cooper D. Grossman, Matthew Brown +8 more

Multi-omic profiling of lung and liver tumor microenvironments of metastatic pancreatic cancer reveals site-specific immune regulatory pathways

Genome biology(2021)10.1186/s13059-021-02363-6

N/A

0.631DataRank · unranked

66 citations

Rossin Erbe, Ludmila Danilova, Zaw Phyo, Emma Bigelow, Genevieve L. Stein-O’Brien +14 more

Individual variation in the emergence of anterior-to-posterior neural fates from human pluripotent stem cells

Stem Cell Reports(2024)10.1016/j.stemcr.2024.07.004

N/A

0.560DataRank · unranked

18 citations

Seungmae Seo, Genevieve L. Stein-O’Brien, Amritha Jaishankar, Kazuya Ogawa, Nicola Micali +19 more

Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces

Cell Systems(2023)10.1016/j.cels.2023.03.004

N/A

0.557DataRank · unranked

40 citations

Melanie Loth, Dimitrios N. Sidiropoulos, Shuming Zhang, Long Yuan, Alexander T.F. Bell +25 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS

Nature Protocols(2023)10.1038/s41596-023-00892-x

N/A

0.489DataRank · unranked

25 citations

Ashley Tsang, Jacob T. Mitchell, David Zhou, Julia Bowden, Emily F. Davis-Marcisak +13 more

Integrated immunological analysis of a successful conversion of locally advanced hepatocellular carcinoma to resectability with neoadjuvant therapy

Journal for ImmunoTherapy of Cancer(2020)10.1136/jitc-2020-000932

N/A

0.483DataRank · unranked

24 citations

Gaurav Sharma, Qingfeng Zhu, Genevieve L. Stein-O’Brien, Jennifer N. Durham, Robert A. Anders +8 more

Two-stage linked component analysis for joint decomposition of multiple biologically related data sets

Biostatistics(2022)10.1093/biostatistics/kxac005

N/A

0.450DataRank · unranked

11 citations

Brian Caffo, Genevieve L. Stein-O’Brien, Jinrui Liu, Ben Langmead, Carlo Colantuoni +2 more

Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02433-9

N/A

0.436DataRank · unranked

15 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Transcriptional signatures of hippocampal tau pathology in primary age-related tauopathy and Alzheimer’s disease

Cell Reports(2025)10.1016/j.celrep.2025.115422

N/A

0.406DataRank · unranked

14 citations

Ryan G. Palaganas, E. Michael Meyer, Javier Redding‐Ochoa, Olga Pletnikova, Haidan Guo +5 more

Universal prediction of cell cycle position using transfer learning

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.06.438463

N/A

0.406DataRank · unranked

14 citations

Genevieve L. Stein-O’Brien, Jonathan J. Augustin, Jared Slosberg, Giovanni A. Carosso, Briana L. Winer +5 more

Inflammatory Signaling in Pancreatic Cancer Transfers Between a Single-cell RNA Sequencing Atlas and Co-Culture

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.14.500096

N/A

0.360DataRank · unranked

10 citations

Samantha Guinn, Joseph A. Tandurella, Jacob T. Mitchell, Dimitrios N. Sidiropoulos, Melanie Loth +24 more

Intrinsic GATA4 expression sensitizes the aortic root to dilation in a Loeys–Dietz syndrome mouse model

Nature Cardiovascular Research(2024)10.1038/s44161-024-00562-5

N/A

0.292DataRank · unranked

6 citations

Wendy A. Espinoza Camejo, Tyler J. Creamer, Leda Restrepo, Muzna Saqib, Rustam Bagirzadeh +8 more

Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R, and GenePattern Notebook implementations of CoGAPS

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499398

N/A

0.292DataRank · unranked

6 citations

Ashley Tsang, Jacob T. Mitchell, Emily F. Davis-Marcisak, Thomas D. Sherman, Ted Liefeld +11 more

A Curated Compendium of Transcriptomic Data for the Exploration of Neocortical Development

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.26.581612

Top 58%

0.269DataRank

Top 58%5 citations

Ricky S. Adkins, Joshua Orvis, Guangyan Li, Xoel Mato-Blanco, Alex M. Casella +15 more

Enter the matrix: factorization uncovers knowledge from omics Names/Affiliations

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/196915

N/A

0.269DataRank · unranked

5 citations

Raman Arora, Aedín C. Culhane, Alexander V. Favorov, Lana X. Garmire, Casey S. Greene +7 more

Mapping multipathology via spatial omic integration

Current Opinion in Biotechnology(2025)10.1016/j.copbio.2025.103398

N/A

0DataRank · unranked

2 citations

Dimitrios N. Sidiropoulos, Meaghan Morris, Genevieve L. Stein-O’Brien, Ryan G. Palaganas

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

Genome Biology(2021)10.1186/s13059-021-02468-y

N/A

0DataRank · unranked

0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/vzc0-qk25

N/A

0DataRank · unranked

0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering

Bioinformatics(2020)10.1093/bioinformatics/btaa183

N/A

0DataRank · unranked

84 citations

Carlo Colantuoni, Loyal A. Goff, Elana J. Fertig, Genevieve L. Stein-O’Brien, Gaurav Sharma

Variation of Human Neural Stem Cells Generating Organizer States In Vitro before Committing to Cortical Excitatory or Inhibitory Neuronal Fates

Cell Reports(2020)10.1016/j.celrep.2020.107599

N/A

0DataRank · unranked

35 citations

Suel–Kee Kim, Marcelo Diaz-Bustamante, Genevieve L. Stein-O’Brien, Seungmae Seo, Joo Heon Shin +18 more

Forecasting cellular states: from descriptive to predictive biology via single-cell multiomics

Current Opinion in Systems Biology(2021)10.1016/j.coisb.2021.03.008

N/A

0DataRank · unranked

17 citations

Michaela C. Ainslie, Elana J. Fertig, Genevieve L. Stein-O’Brien

Two-stage Linked Component Analysis for Joint Decomposition of Multiple Biologically Related Data Sets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.22.435728

N/A

0DataRank · unranked

1 citations

Brian Caffo, Genevieve L. Stein-O’Brien, Jinrui Liu, Ben Langmead, Carlo Colantuoni +2 more

Expression bias in retinoic acid responsive genes defines variations in neural differentiation of human pluripotent stem cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.17.435870

N/A

0DataRank · unranked

0 citations

Seungmae Seo, Genevieve L. Stein-O’Brien, Amritha Jaishankar, Kazuya Ogawa, Nicola Micali +18 more

Integrated T cell cytometry metrics for immune-monitoring applications in immunotherapy clinical trials

JCI Insight(2022)10.1172/jci.insight.160398

N/A

0DataRank · unranked

17 citations

Genevieve L. Stein-O’Brien, Ludmila Danilova, Nicole Groß, Soren Charmsaz, Stephanie Xavier +7 more

Pumping the brakes on RNA velocity – understanding and interpreting RNA velocity estimates

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.19.494717

N/A

0DataRank · unranked

17 citations

Genevieve L. Stein-O’Brien, Leandros Boukas, Loyal A. Goff, Kasper D. Hansen, Shijie Zheng

Structured Joint Decomposition (SJD) identifies shared dynamics across collections of biologically related multi-omics data matrices

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.07.515489

N/A

0DataRank · unranked

1 citations

Guangyan Li, Jinrui Liu, Shreyash Sonthalia, Genevieve L. Stein-O’Brien, Luo Xiao +3 more

Psychedelics reopen the social reward learning critical period

Nature(2023)10.1038/s41586-023-06204-3

N/A

0DataRank · unranked

338 citations

Edward J. Sawyer, Young Jun Song, M. F. Wilkinson, Yasmin Padovan‐Hernandez, Júnia L. de Deus +7 more

Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates

Genome biology(2023)10.1186/s13059-023-03065-x

N/A

0DataRank · unranked

64 citations

Genevieve L. Stein-O’Brien, Leandros Boukas, Loyal A. Goff, Kasper D. Hansen, Shijie Zheng

Morphology-guided transcriptomic analysis of human pancreatic cancer organoids reveals microenvironmental signals that enhance invasion

Journal of Clinical Investigation(2023)10.1172/jci162054

N/A

0DataRank · unranked

24 citations

Hildur Knútsdóttir, Fatemeh Shojaeian, Michael G. Lerner, Maria F. Wissler, Elodie Henriet +15 more

Transcriptional Signatures of Hippocampal Tau Pathology in Primary Age-Related Tauopathy and Alzheimer’s Disease

medRxiv(2023)10.1101/2023.09.12.23295440

N/A

0DataRank · unranked

2 citations

Ryan G. Palaganas, E. Michael Meyer, Javier Redding‐Ochoa, Olga Pletnikova, Haidan Guo +5 more

BRN1/2 Function in Neocortical Size Determination and Microcephaly

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.02.565322

N/A

0DataRank · unranked

1 citations

Yijun Xu, José P. Llongueras, Rachel Vistein, Loyal A. Goff, Kristina Nielsen +7 more

Claudin 7 suppresses invasion and metastasis through repression of a smooth muscle actin program

The Journal of Cell Biology(2024)10.1083/jcb.202311002

N/A

0DataRank · unranked

4 citations

Rosela Golloshi, Chae Yun Cho, Yuqian Wang, Parker Stevenson, Genevieve L. Stein-O’Brien +3 more

Community-wide hackathons to identify central themes in single-cell multi-omics

UNC Libraries(2025)10.17615/96cj-z232

N/A

0DataRank · unranked

0 citations

Al J. Abadi, Emily F. Davis-Marcisak, Lauren Hsu, Arshi Arora, Alexis Coullomb +26 more

Genevieve L. Stein-O’Brien

Indexed papers

Top data-sharing exemplar

Papers