🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Rudolf Pillich

University of California San Diego

ORCID: 0000-0001-8682-0568
Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
1.9Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

NDEx: Accessing Network Models and Streamlining Network Biology Workflows

Current Protocols(2021)10.1002/cpz1.258
Top 19%
1.1DataRank
Top 19%38 citations

Jing Chen, Christopher Churas, Sophie Liu, Keiichiro Ono, David Otasek +2 more

Papers

Driven by 12 papers — median percentile 78. Top paper: “Interpretation of cancer mutations using a multiscale map of protein systems”.

Interpretation of cancer mutations using a multiscale map of protein systems

Science(2021)10.1126/science.abf3067
N/A
2.1DataRank · unranked
88 citations

Marcus R. Kelly, Dana J. Ramms, Marissa L. Heintschel, Kai Tao, Beril Tutuncuoglu +27 more

NDEx: Accessing Network Models and Streamlining Network Biology Workflows

Current Protocols(2021)10.1002/cpz1.258
Top 19%
1.1DataRank
Top 19%38 citations

Jing Chen, Christopher Churas, Sophie Liu, Keiichiro Ono, David Otasek +2 more

State of the interactomes: an evaluation of molecular networks for generating biological insights

Molecular Systems Biology(2024)10.1038/s44320-024-00077-y
Top 26%
0.781DataRank
Top 26%24 citations

Scott Colton, Leah V. Schaffer, Rudolf Pillich, Christopher Churas, Dexter Pratt +2 more

A multi-scale map of protein assemblies in the DNA damage response

Cell Systems(2023)10.1016/j.cels.2023.04.007
N/A
0.682DataRank · unranked
40 citations

Minkyu Kim, Marcus R. Kelly, Fan Zheng, Christopher A. Koczor, Jianfeng Li +14 more

Translating desktop success to the web in the cytoscape project

Frontiers in Bioinformatics(2023)10.3389/fbinf.2023.1125949
N/A
0DataRank · unranked
3 citations

Rudolf Pillich, John H. Morris, Dexter Pratt

Evaluation of large language models for discovery of gene set function

Research Square(2023)10.21203/rs.3.rs-3270331/v1
N/A
0DataRank · unranked
9 citations

Mengzhou Hu, Sahar Alkhairy, Ingoo Lee, Rudolf Pillich, Robin E. Bachelder +2 more

Evaluation of large language models for discovery of gene set function

arXiv (Cornell University)(2023)10.48550/arxiv.2309.04019
N/A
0DataRank · unranked
8 citations

Sahar Alkhairy, Ingoo Lee, Rudolf Pillich, Fong, Dylan, Smith, Kevin +4 more

Evaluation of large language models for discovery of gene set function

Nature Methods(2024)10.1038/s41592-024-02525-x
N/A
0DataRank · unranked
82 citations

Sahar Alkhairy, Ingoo Lee, Rudolf Pillich, Dylan Fong, Kevin R. Smith +4 more

Cytoscape Web: bringing network biology to the browser

Nucleic Acids Research(2025)10.1093/nar/gkaf365
N/A
0DataRank · unranked
91 citations

Dylan Fong, Chengzhan Gao, Christopher Churas, Rudolf Pillich, Joanna Lenkiewicz +12 more

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.513552
N/A
0DataRank · unranked
2 citations

Jake Y. Chen, Christopher Churas, Daniel Tik-Pui Fong, Trey Ideker, SN Liu +6 more

NDEx IQuery: a multi-method network gene set analysis leveraging the Network Data Exchange

Bioinformatics(2023)10.1093/bioinformatics/btad118
N/A
0DataRank · unranked
42 citations

Jing Chen, Christopher Churas, Dylan Fong, Benjamin M. Gyori, Jisoo Park +6 more

IL17A Blockade with Ixekizumab Suppresses MuvB Signaling in Clinical Psoriasis

Journal of Investigative Dermatology(2023)10.1016/j.jid.2023.03.1658
N/A
0DataRank · unranked
5 citations

Mesias Pedroza, Rudolf Pillich, Venkatesh Krishnan, Bruce W. Konicek, Ernst R. Dow +4 more