Mario Stanke

Also affiliated with Universität Greifswald, Micromun

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 11 papers. Top paper: “Enhanced genome assembly and a new official gene set for Tribolium castaneum”.

Enhanced genome assembly and a new official gene set for Tribolium castaneum

BMC Genomics(2020)10.1186/s12864-019-6394-6

N/A

0DataRank · unranked

152 citations

Jennifer Shelton, Lizzy Gerischer, Panos Ioannidis, Maria Ninova, Jürgen Dönitz +40 more

BRAKER2: Automatic Eukaryotic Genome Annotation with GeneMark-EP+ and AUGUSTUS Supported by a Protein Database

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.10.245134

N/A

0DataRank · unranked

143 citations

Katharina J. Hoff, Alexandre Lomsadze, Mario Stanke, Mark Borodovsky, Tomáš Brůna

Faculty Opinions recommendation of Whole-Genome Alignment and Comparative Annotation.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature(2020)10.3410/f.734326805.793570658

N/A

0DataRank · unranked

1 citations

Mario Stanke

Faculty Opinions recommendation of Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature(2020)10.3410/f.736641497.793578802

N/A

0DataRank · unranked

0 citations

Mario Stanke

BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqaa108

N/A

0DataRank · unranked

1827 citations

Katharina J. Hoff, Alexandre Lomsadze, Mario Stanke, Mark Borodovsky, Tomáš Brůna

TSEBRA: transcript selector for BRAKER

BMC Bioinformatics(2021)10.1186/s12859-021-04482-0

N/A

0DataRank · unranked

381 citations

Katharina J. Hoff, Tomáš Brůna, Mark Borodovsky, Mario Stanke, Lars Gabriel

The genomic basis of evolutionary differentiation among honey bees

Genome Research(2021)10.1101/gr.272310.120

N/A

0DataRank · unranked

35 citations

Philipp Brand, Hung N. Nguyen, Jacob Herman, Francisco Câmara Ferreira, Daniel Ence +18 more

TSEBRA: Transcript Selector for BRAKER

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.07.447316

N/A

0DataRank · unranked

14 citations

Katharina J. Hoff, Tomáš Brůna, Mark Borodovsky, Mario Stanke, Lars Gabriel

Galba: genome annotation with miniprot and AUGUSTUS

BMC Bioinformatics(2023)10.1186/s12859-023-05449-z

N/A

0DataRank · unranked

111 citations

Heng Li, Joseph Guhlin, Daniel Honsel, Steffen Herbold, Mario Stanke +5 more

BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS and TSEBRA

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.10.544449

N/A

0DataRank · unranked

239 citations

Tomáš Brůna, Katharina J. Hoff, Matthis Ebel, Alexandre Lomsadze, Mark Borodovsky +2 more

BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA

Genome Research(2024)10.1101/gr.278090.123

N/A

0DataRank · unranked

574 citations

Tomáš Brůna, Katharina J. Hoff, Matthis Ebel, Alexandre Lomsadze, Mark Borodovsky +2 more