Pierre Baldi

Also affiliated with Istituto Nazionale di Fisica Nucleare, Sezione di Ferrara, Irvine University

Computer SciencePhysics and AstronomyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.845Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

CircadiOmics: circadian omic web portal

Nucleic Acids Research(2022)10.1093/nar/gkac419

Top 34%

0.575DataRank

Top 34%20 citations

Forest Agostinelli, Tomoki Sato, Kouhei Shimaji, Pierre Baldi, Muntaha Samad

Papers

Driven by 47 papers — median percentile 54. Top paper: “Integration of feeding behavior by the liver circadian clock reveals network dependency of metabolic rhythms”.

Integration of feeding behavior by the liver circadian clock reveals network dependency of metabolic rhythms

Science Advances(2021)10.1126/sciadv.abi7828

N/A

0.735DataRank · unranked

133 citations

Kevin B. Koronowski, Jacob G. Smith, Jiejun Shi, Paolo Kunderfranco, Roberta Carriero +24 more

Liver and muscle circadian clocks cooperate to support glucose tolerance in mice

Cell Reports(2023)10.1016/j.celrep.2023.112588

N/A

0.601DataRank · unranked

54 citations

Kevin B. Koronowski, Thomas Mortimer, Tomoki Sato, Carolina M. Greco, Paul Petrus +22 more

CircadiOmics: circadian omic web portal

Nucleic Acids Research(2022)10.1093/nar/gkac419

Top 34%

0.575DataRank

Top 34%20 citations

Forest Agostinelli, Tomoki Sato, Kouhei Shimaji, Pierre Baldi, Muntaha Samad

Peripheral inflammation is associated with brain atrophy and cognitive decline linked to mild cognitive impairment and Alzheimer’s disease

Scientific Reports(2024)10.1038/s41598-024-67177-5

N/A

0.500DataRank · unranked

27 citations

Kwangsik Nho, John W. Newman, Matthias Arnold, Kevin Huynh, Peter J. Meikle +53 more

Circular-SWAT for deep learning based diagnostic classification of Alzheimer's disease: application to metabolome data

EBioMedicine(2023)10.1016/j.ebiom.2023.104820

N/A

0.406DataRank · unranked

14 citations

Jun Pyo Kim, Paula J. Bice, Kevin Huynh, Tingting Wang, Matthias Arnold +88 more

MOVER: Medical Informatics Operating Room Vitals and Events Repository

medRxiv(2023)10.1101/2023.03.03.23286777

Top 58%

0.269DataRank

Top 58%2 citations

Joseph Rinehart, Mirana Angel, Yuzo Kanomata, Pierre Baldi, Maxime Cannesson +1 more

Intergenerational Stress Transmission is Associated with Brain Metabotranscriptome Remodeling and Mitochondrial Dysfunction

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.09.438868

N/A

0.165DataRank · unranked

2 citations

Siwei Chen, Lamees Alhassen, Alvin Phan, Mohammad Khoudari, Angele De Silva +11 more

Interrogating Metabolic Interactions Between Skeletal Muscle and Liver Circadian Clocks In Vivo

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.27.482160

N/A

0.165DataRank · unranked

2 citations

Kevin B. Koronowski, Tomoki Sato, Carolina M. Greco, Paul Petrus, Amandine Verlande +21 more

Learning in the machine: To share or not to share?

Neural Networks(2020)10.1016/j.neunet.2020.03.016

N/A

0DataRank · unranked

2 citations

Erik Linstead, Nicholas LaHaye, Pierre Baldi, Jordan Ott

Fold recognition by scoring protein maps using the congruence coefficient

Bioinformatics(2020)10.1093/bioinformatics/btaa833

N/A

0DataRank · unranked

1 citations

Pierre Baldi, Pietro Di Lena

Fold recognition by scoring protein map similarities using the congruence coefficient

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.20.106484

N/A

0DataRank · unranked

0 citations

Pierre Baldi, Pietro Di Lena

Guidelines for Genome-Scale Analysis of Biological Rhythms

UNC Libraries(2020)10.17615/ktp3-6d25

N/A

0DataRank · unranked

0 citations

Eric Erquan Zhang, Aziz Sancar, Luciano DiTacchio, Justin Blau, Jiajia Li +88 more

Development and validation of an interpretable neural network for prediction of postoperative in-hospital mortality

npj Digital Medicine(2021)10.1038/s41746-020-00377-1

N/A

0DataRank · unranked

63 citations

Muntaha Samad, Ira Hofer, Maxime Cannesson, Pierre Baldi, Christine K. Lee

Patterns of cilia gene dysregulations in major psychiatric disorders

Progress in Neuro-Psychopharmacology and Biological Psychiatry(2021)10.1016/j.pnpbp.2021.110255

N/A

0DataRank · unranked

52 citations

Siwei Chen, Marquis P. Vawter, Brianna Robbins, Henry Nguyen, Thant Myint +7 more

Cocaine induces paradigm-specific changes to the transcriptome within the ventral tegmental area

Neuropsychopharmacology(2021)10.1038/s41386-021-01031-4

N/A

0DataRank · unranked

36 citations

Siwei Chen, Joy Beardwood, Alberto J. López, Lilyana V. Pham, Ashley M. Keiser +6 more

Deep Learning–Assisted Multiphoton Microscopy to Reduce Light Exposure and Expedite Imaging in Tissues With High and Low Light Sensitivity

Translational Vision Science & Technology(2021)10.1167/tvst.10.12.30

N/A

0DataRank · unranked

22 citations

Alexander Fast, Yuntian Xue, Magdalene J. Seiler, William C. Tang, Mihaela Balu +3 more

Intergenerational trauma transmission is associated with brain metabotranscriptome remodeling and mitochondrial dysfunction

Communications Biology(2021)10.1038/s42003-021-02255-2

N/A

0DataRank · unranked

32 citations

Siwei Chen, Lamees Alhassen, Alvin Phan, Mohammad Khoudari, Angele De Silva +11 more

Transcriptome Profiling of Dysregulated GPCRs Reveals Overlapping Patterns across Psychiatric Disorders and Age-Disease Interactions

Cells(2021)10.3390/cells10112967

N/A

0DataRank · unranked

27 citations

Wedad Alhassen, Tri Minh Truong, Michael Angelo Maglalang Gonzales, Vincent Vachirakorntong, Siwei Chen +4 more

Dynamic Changes of Brain Cilia Transcriptomes across the Human Lifespan

International Journal of Molecular Sciences(2021)10.3390/ijms221910387

N/A

0DataRank · unranked

18 citations

Wedad Alhassen, Roudabeh Vakil Monfared, Benjamin Vachirakorntong, Surya M. Nauli, Pierre Baldi +2 more

Brain histone beta-hydroxy-butyrylation couples metabolism with gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.28.449924

N/A

0DataRank · unranked

0 citations

Siwei Chen, Leonardo Lupori, Francesco Finamore, Muntaha Samad, Francesco Raimondi +6 more

Atlas of exercise metabolism reveals time-dependent signatures of metabolic homeostasis

Cell Metabolism(2022)10.1016/j.cmet.2021.12.016

N/A

0DataRank · unranked

198 citations

Kenneth A. Dyar, Jonas T. Treebak, Sara L. Jepsen, Amy M. Ehrlich, Stephen P. Ashcroft +17 more

The hidden link between circadian entropy and mental health disorders

Translational Psychiatry(2022)10.1038/s41398-022-02028-3

N/A

0DataRank · unranked

54 citations

Justine Lee, Kalyani Asthana, Roudabeh Vakil Monfared, Jiaqi Chen, Sammy Alhassen +5 more

Tryptophan metabolism is a physiological integrator regulating circadian rhythms

Molecular Metabolism(2022)10.1016/j.molmet.2022.101556

N/A

0DataRank · unranked

52 citations

Marlene Cervantes, Muntaha Samad, Tomoki Sato, Alina Chao, Shogo Sato +13 more

Hippocampal ensembles represent sequential relationships among an extended sequence of nonspatial events

Nature Communications(2022)10.1038/s41467-022-28057-6

N/A

0DataRank · unranked

49 citations

Lingge Li, Forest Agostinelli, Mansi Saraf, Keiland W Cooper, Derenik Haghverdian +4 more

An atlas of posttranslational modifications on RNA binding proteins

Nucleic Acids Research(2022)10.1093/nar/gkac243

N/A

0DataRank · unranked

43 citations

Jingtian Wang, Siwei Chen, Pierre Baldi, Ryan A. Flynn, Robert C. Spitale +1 more

Weakly Supervised Polyp Segmentation in Colonoscopy Images Using Deep Neural Networks

Journal of Imaging(2022)10.3390/jimaging8050121

N/A

0DataRank · unranked

12 citations

Gregor Urban, Pierre Baldi, Siwei Chen

Deep learning to enable color vision in the dark

PLoS ONE(2022)10.1371/journal.pone.0265185

N/A

0DataRank · unranked

9 citations

Ekaterina Deyneka, Francesco Ceccarelli, Josiah K. To, Si-Wei Chen, Jianing Tang +3 more

The central clock suffices to drive the majority of circulatory metabolic rhythms

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.24.477514

N/A

0DataRank · unranked

5 citations

Jacob G. Smith, Kevin B. Koronowski, Siwei Chen, Tomoki Sato, Carolina M. Greco +10 more

Tryptophan Metabolism is a Physiological Integrator Regulating Circadian Rhythms

Research Square(2022)10.21203/rs.3.rs-1479494/v1

N/A

0DataRank · unranked

5 citations

Marlene Cervantes, Muntaha Samad, Tomoki Sato, Alina Chao, Shogo Sato +13 more

Brain histone beta-hydroxy-butyrylation couples metabolism with gene expression

Research Square(2022)10.21203/rs.3.rs-1826450/v1

N/A

0DataRank · unranked

0 citations

Siwei Chen, Leonardo Lupori, Francesco Finamore, Muntaha Samad, Francesco Raimondi +6 more

Brain histone beta-hydroxybutyrylation couples metabolism with gene expression

Cellular and Molecular Life Sciences(2023)10.1007/s00018-022-04673-9

N/A

0DataRank · unranked

39 citations

Siwei Chen, Leonardo Lupori, Francesco Finamore, Fabrizia Carli, Muntaha Samad +11 more

Reanalysis of primate brain circadian transcriptomics reveals connectivity-related oscillations

iScience(2023)10.1016/j.isci.2023.107810

N/A

0DataRank · unranked

7 citations

Siwei Chen, Roudabeh Vakil Monfared, Pieter Derdeyn, Kenneth Leong, Tiffany Chang +4 more

Spatiotemporal Mapping of Brain Cilia Reveals Region-Specific Oscillation of Length and Orientation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.28.546950

N/A

0DataRank · unranked

3 citations

Sherif Abdelkarim, Pieter Derdeyn, Kiki Chen, Hanting Wu, Kenneth Leong +8 more

Clinical Knowledge and Reasoning Abilities of AI Large Language Models in Anesthesiology: A Comparative Study on the American Board of Anesthesiology Examination

Anesthesia & Analgesia(2024)10.1213/ane.0000000000006892

N/A

0DataRank · unranked

23 citations

Joseph Rinehart, Maxime P. Canneson, Pierre Baldi, Mirana C. Angel

Circadian cilia transcriptome in mouse brain across physiological and pathological states

Molecular Brain(2024)10.1186/s13041-024-01143-0

N/A

0DataRank · unranked

1 citations

Kousha Changizi Ashtiani, Roudabeh Vakil Monfared, Pierre Baldi, Amal Alachkar, Kiki Chen

Maternal circadian rhythms during pregnancy dictate metabolic plasticity in offspring

Cell Metabolism(2025)10.1016/j.cmet.2024.12.002

N/A

0DataRank · unranked

27 citations

Kenichiro Kinouchi, Manami Katoh, Kousha Changizi Ashtiani, Sherif Abdelkarim, Hiroyuki Morimoto +23 more

Evaluating the Intelligence of large language models: A comparative study using verbal and visual IQ tests

Computers in Human Behavior Artificial Humans(2025)10.1016/j.chbah.2025.100170

N/A

0DataRank · unranked

2 citations

David J. Lu, Dora‐Luz Flores, Susanne M. Jaeggi, Pierre Baldi, Sherif Abdelkarim

On the imperative of including 24-h and longitudinal multidimensional physiological phenotyping in rodent models of sleep apnea

Sleep Medicine(2025)10.1016/j.sleep.2025.01.017

N/A

0DataRank · unranked

2 citations

Guillaume Vial, Sophie Bouyon, Anne Briançon‐Marjollet, Gilles Faury, Claire Arnaud +7 more

Deep Learning Analysis of Vibrational Spectra of Bacterial Lysate for Rapid Antimicrobial Susceptibility Testing

ACS Nano(2020)10.1021/acsnano.0c05693

N/A

0DataRank · unranked

146 citations

Sasha Ronaghi, Muntaha Samad, Hong Wei, Dean Gia Nguyen, Antony Superio Cabuslay +6 more

Domain Knowledge Inclusive Monotonic Neural Network Guides Patient-Specific Induction of General Anesthesia Dosing

A&A Practice(2025)10.1213/xaa.0000000000002034

N/A

0DataRank · unranked

0 citations

Muntaha Samad, Samir Kendale, Pierre Baldi, S. Joshua Swamidass, Kathryn Sarullo

S-adenosyl-l-homocysteine hydrolase links methionine metabolism to the circadian clock and chromatin remodeling

Science Advances(2020)10.1126/sciadv.abc5629

N/A

0DataRank · unranked

91 citations

Marlene Cervantes, Jean‐Michel Fustin, Kakeru Ito, Nicholas Ceglia, Muntaha Samad +14 more

Development and validation of a deep neural network model to predict postoperative mortality, acute kidney injury, and reintubation using a single feature set

npj Digital Medicine(2020)10.1038/s41746-020-0248-0

N/A

0DataRank · unranked

80 citations

Christine Lee, Eilon Gabel, Pierre Baldi, Maxime Cannesson, Ira Hofer

Reshaping circadian metabolism in the suprachiasmatic nucleus and prefrontal cortex by nutritional challenge

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2016589117

N/A

0DataRank · unranked

54 citations

Muntaha Samad, Kenichiro Kinouchi, Yu Liu, Jean‐Christophe Helbling, Marie‐Pierre Moisan +4 more

Training and Validation of Deep Neural Networks for the Prediction of 90-Day Post-Liver Transplant Mortality Using UNOS Registry Data

Transplantation Proceedings(2020)10.1016/j.transproceed.2019.10.019

N/A

0DataRank · unranked

54 citations

Christine K. Lee, Christopher Wray, Vatche G. Agopian, Gregor Urban, Pierre Baldi +2 more

Metabolomic and transcriptomic signatures of prenatal excessive methionine support nature rather than nurture in schizophrenia pathogenesis

Communications Biology(2020)10.1038/s42003-020-01124-8

N/A

0DataRank · unranked

22 citations

Wedad Alhassen, Ryan F. Yoshimura, Angele De Silva, Geoffrey W. Abbott, Pierre Baldi +2 more

Protein profiles: Biases and protocols

Computational and Structural Biotechnology Journal(2020)10.1016/j.csbj.2020.08.015

N/A

0DataRank · unranked

12 citations

Mirko Torrisi, Chr̀istophe Magnan, Gianluca Pollastri, Pierre Baldi, Gregor Urban

Cocaine-mediated circadian reprogramming in the striatum through dopamine D2R and PPARγ activation

Nature Communications(2020)10.1038/s41467-020-18200-6

N/A

0DataRank · unranked

32 citations

Robert G. Lewis, Marlene Cervantes, Yu Liu, Paola Tognini, Pierre Baldi +3 more

Pierre Baldi

Indexed papers

Top data-sharing exemplar

Papers